CmaCh18G005920 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCACCTTGCCCCCATGCATTCTTCCATATATGAATGTTTTGAGGAAAAGTTGTTGGCCAGACAAGTAGAACAGGTAATTAAAACTGTCGATGAAAAGCAGTTGCCCATTGAAACGAAGACAGAGAAGAAGGAAGGCGGTGATAATGGCGGCAACGGCAGCGTTGAACAAGTAATCAAATTGGTGAAAGAAACTATTGATATTGGATGTCATTATGTGAAGGCAAAGCAAGTAGAAAGAAACAATTGCATGGGAATCCAATTACATGGACTTCAAAGAAACAAAAGATGGTGGCACTTTCATCCTGTGAAGCGGAGTATATTACAGCAACGTCAGCTTCTTGTCAAGGAATATGCTAATCTTGCATTAACCGTAATTAATTTATATTTATTGTTTGTATTTAAAATTATGTCAGTTAAGGGAAGTTTAGCAGTTAAGGGAAGTTATTAGCAGTTAAGGGAAGTTATTAGCAGTAAAGGGAAGTTATTAGCGGTTAAGGGAAGTTATTAGTAGTTATTAATGTGTGGTTATTCTGTTTATATATGTACTGTGTAACAAGTTCAATACGATAAGTTGGTTTTGTTTATTTTCCTGAGTATTGTCTCTTTCTTGTATGTGTGTTTCTGACATTTGGTATCAGAGCGTGGTTATATGCCAAAGATCATGCCGAAAAATGATAACAACACTGGAGAGAGAGGAGAGTCGTCGAAGTCTGCAACAAAGGAAGGTCTGGTATCACTCCAATACCCAACGTTATCGAGAACCAACTACTCAACATGGGCTATGAAGATGAAGGTCTATTTGCGTGCTCAAGGGGTATGGGACGCAATCGAATCAACTGAGTCTCTGGATAGTCTTAATGAAAGGAAGGATCAAATGGCCTTAGTAGCTATCTATCAAGCAATACTTGAGAAGATGTTTTTGTTAGCAGAGAAAGAGACAGCAAGAGAAGCAAGGCAGACGTTAAAAACTATTCATGTCCGTGCTGAACGTGTAAAGGAGGCAAAGATCCAAACTCTGAAGATTGAGTTCGAAATTATGAATATGAAGGAGTCCGAGACTATTGATGATTATGCAGCAAGGTTGACAGGAGCTGTTAATAAAATACGTACATTTGGAGACAAGTTTGAAGAGGCATACTTGGTGAAAAAATTTCTCCACTCAGTACCTTCTAAGTTTCTTCATATCACATCGGCAATAGAGCAATTTGCCGATTTAAAGGTGATGACCATGGAGGAAGTCATCGGCCGTCTTAAAGCATACGAGGAATGGATCAGTGGCAACAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAATGGAAAGCAAAAGAATCGAAAGGCAAAGGTGAAAGTTCAACGTTTGAGAAAAAACGTAGCGACAATGGAGGCCATTGCCGAGGGCGAGGTCGCAATGGTCGCTGGAGAGGGAGAGGTCATGGATGTGGAAACGACTCGTTACATCAAGAGAAGAAGGGTGACAAGAGCAAGGTAAAATGCTACAATTGTCAAGGCCTAGGCCACTATGCCTCAGAATGTCAGAAGATGAAGTGTTATAATTGTCAAGGCCTAGGCCACTATGCCTCAGAATGTCGGAAGGTGAAGTGTTATAACTGTTAAAAGATTGGCCATTATGCATCCCACTGTAGATTAAAGAAAAGGGAGAATCAGGCGCACTTAACTGAGACGCAAAGTGATGAGGATGAGCTAGCCTTACTTATGGTACAAGTTTGTGAAGTCCGAACTCTCGGCTCACCAGAGTTGACTGAGATGGCTCATTATGAAGAGAAGGTTGTCCCGGAAGAAATTGAGAAGAAAAGCAACACTTGGTTCCTAGATACAGGAGCCAGCAATCATATGACTGGTTGTCGAAGTTGGTTCTCGGTATTGAACGAGTCAGTGATCGGCACGGTGAATTTCAGAGATGGATCACTTGTAGAGATAAAAGGATGTGGAGGTGTGAAGATTGAATCGGAGAAAAAAACAGAGAAGCGAGAAGAGAAAAAGAGCGATGGCGAGAAAATCGTTGGCGTTGTGAAGTTTGAATCCGAGGAGAAGAGCGATGGCGTTGTGGCGGAGGTCCAGAATGTGGCAACGGAGGTAGCGAAAGCAAAGGAGATAAAAGAGAAAGACTATTACGATGAGAAGAAGGAGAAGGAGGACGGAAACAATGGCGGTGCTATTGAAAAACAAGTTGCCGGAGAAACAAAAGCAGAGAAGGAAAAGGAGAAGGAGGCCATTGTTTCCGGCAGTGCAATTGAAGTAGCACAGGTAATTAAACTTGTTAAAGAAAAGCCGTTGGCTGGACAAGTAGAACAGGTAATTAAAACTGTCGATGAAAAGCAGTTGCCCATTGAAACGAAGACAGAGAAGAAGGAAGGCAGTGATAATGGCGGCAGCAGCAGCGTTGAACAAGTAATCAAACTGGTGAAAGAAACTATTGATATTGGATGTCATATGTGA ATGCACCTTGCCCCCATGCATTCTTCCATATATGAATGTTTTGAGGAAAAGTTGTTGGCCAGACAAGTAGAACAGGTAATTAAAACTGTCGATGAAAAGCAGTTGCCCATTGAAACGAAGACAGAGAAGAAGGAAGGCGGTGATAATGGCGGCAACGGCAGCGTTGAACAAGTAATCAAATTGGTGAAAGAAACTATTGATATTGGATGTCATTATGTGAAGGCAAAGCAAGTAGAAAGAAACAATTGCATGGGAATCCAATTACATGGACTTCAAAGAAACAAAAGATGGTGGCACTTTCATCCTGTGAAGCGGAGTATATTACAGCAACAGCGTGGTTATATGCCAAAGATCATGCCGAAAAATGATAACAACACTGGAGAGAGAGGAGAGTCGTCGAAGTCTGCAACAAAGGAAGGTCTGGTATCACTCCAATACCCAACGTTATCGAGAACCAACTACTCAACATGGGCTATGAAGATGAAGGTCTATTTGCGTGCTCAAGGGGTATGGGACGCAATCGAATCAACTGAGTCTCTGGATAGTCTTAATGAAAGGAAGGATCAAATGGCCTTAGTAGCTATCTATCAAGCAATACTTGAGAAGATGTTTTTGTTAGCAGAGAAAGAGACAGCAAGAGAAGCAAGGCAGACGTTAAAAACTATTCATGTCCGTGCTGAACGTGTAAAGGAGGCAAAGATCCAAACTCTGAAGATTGAGTTCGAAATTATGAATATGAAGGAGTCCGAGACTATTGATGATTATGCAGCAAGGTTGACAGGAGCTGTTAATAAAATACGTACATTTGGAGACAAGTTTGAAGAGGCATACTTGGTGAAAAAATTTCTCCACTCAGTACCTTCTAAGTTTCTTCATATCACATCGGCAATAGAGCAATTTGCCGATTTAAAGGTGATGACCATGGAGGAAGTCATCGGCCGTCTTAAAGCATACGAGGAATGGATCAGTGGCAACAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAATGGAAAGCAAAAGAATCGAAAGGCAAAGGTGAAAGTTCAACGTTTGAGAAAAAACGTAGCGACAATGGAGGCCATTGCCGAGGGCGAGGTCGCAATGGTCGCTGGAGAGGGAGAGGTCATGGATGTGGAAACGACTCGTTACATCAAGAGAAGAAGGGTGACAAGAGCAAGATTGGCCATTATGCATCCCACTGTAGATTAAAGAAAAGGGAGAATCAGGCGCACTTAACTGAGACGCAAAGTGATGAGGATGAGCTAGCCTTACTTATGGTACAAGTTTGTGAAGTCCGAACTCTCGGCTCACCAGAGTTGACTGAGATGGCTCATTATGAAGAGAAGGTTGTCCCGGAAGAAATTGAGAAGAAAAGCAACACTTGGTTCCTAGATACAGGAGCCAGCAATCATATGACTGGTTGTCGAAGTTGGTTCTCGGTATTGAACGAGTCAGTGATCGGCACGGTGAATTTCAGAGATGGATCACTTGTAGAGATAAAAGGATGTGGAGGTGTGAAGATTGAATCGGAGAAAAAAACAGAGAAGCGAGAAGAGAAAAAGAGCGATGGCGAGAAAATCGTTGGCGTTGTGAAGTTTGAATCCGAGGAGAAGAGCGATGGCGTTGTGGCGGAGGTCCAGAATGTGGCAACGGAGGTAGCGAAAGCAAAGGAGATAAAAGAGAAAGACTATTACGATGAGAAGAAGGAGAAGGAGGACGGAAACAATGGCGGTGCTATTGAAAAACAAGTTGCCGGAGAAACAAAAGCAGAGAAGGAAAAGGAGAAGGAGGCCATTGTTTCCGGCAGTGCAATTGAAGTAGCACAGGTAATTAAACTTGTTAAAGAAAAGCCGTTGGCTGGACAAGTAGAACAGGTAATTAAAACTGTCGATGAAAAGCAGTTGCCCATTGAAACGAAGACAGAGAAGAAGGAAGGCAGTGATAATGGCGGCAGCAGCAGCGTTGAACAAGTAATCAAACTGGTGAAAGAAACTATTGATATTGGATGTCATATGTGA ATGCACCTTGCCCCCATGCATTCTTCCATATATGAATGTTTTGAGGAAAAGTTGTTGGCCAGACAAGTAGAACAGGTAATTAAAACTGTCGATGAAAAGCAGTTGCCCATTGAAACGAAGACAGAGAAGAAGGAAGGCGGTGATAATGGCGGCAACGGCAGCGTTGAACAAGTAATCAAATTGGTGAAAGAAACTATTGATATTGGATGTCATTATGTGAAGGCAAAGCAAGTAGAAAGAAACAATTGCATGGGAATCCAATTACATGGACTTCAAAGAAACAAAAGATGGTGGCACTTTCATCCTGTGAAGCGGAGTATATTACAGCAACAGCGTGGTTATATGCCAAAGATCATGCCGAAAAATGATAACAACACTGGAGAGAGAGGAGAGTCGTCGAAGTCTGCAACAAAGGAAGGTCTGGTATCACTCCAATACCCAACGTTATCGAGAACCAACTACTCAACATGGGCTATGAAGATGAAGGTCTATTTGCGTGCTCAAGGGGTATGGGACGCAATCGAATCAACTGAGTCTCTGGATAGTCTTAATGAAAGGAAGGATCAAATGGCCTTAGTAGCTATCTATCAAGCAATACTTGAGAAGATGTTTTTGTTAGCAGAGAAAGAGACAGCAAGAGAAGCAAGGCAGACGTTAAAAACTATTCATGTCCGTGCTGAACGTGTAAAGGAGGCAAAGATCCAAACTCTGAAGATTGAGTTCGAAATTATGAATATGAAGGAGTCCGAGACTATTGATGATTATGCAGCAAGGTTGACAGGAGCTGTTAATAAAATACGTACATTTGGAGACAAGTTTGAAGAGGCATACTTGGTGAAAAAATTTCTCCACTCAGTACCTTCTAAGTTTCTTCATATCACATCGGCAATAGAGCAATTTGCCGATTTAAAGGTGATGACCATGGAGGAAGTCATCGGCCGTCTTAAAGCATACGAGGAATGGATCAGTGGCAACAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAATGGAAAGCAAAAGAATCGAAAGGCAAAGGTGAAAGTTCAACGTTTGAGAAAAAACGTAGCGACAATGGAGGCCATTGCCGAGGGCGAGGTCGCAATGGTCGCTGGAGAGGGAGAGGTCATGGATGTGGAAACGACTCGTTACATCAAGAGAAGAAGGGTGACAAGAGCAAGATTGGCCATTATGCATCCCACTGTAGATTAAAGAAAAGGGAGAATCAGGCGCACTTAACTGAGACGCAAAGTGATGAGGATGAGCTAGCCTTACTTATGGTACAAGTTTGTGAAGTCCGAACTCTCGGCTCACCAGAGTTGACTGAGATGGCTCATTATGAAGAGAAGGTTGTCCCGGAAGAAATTGAGAAGAAAAGCAACACTTGGTTCCTAGATACAGGAGCCAGCAATCATATGACTGGTTGTCGAAGTTGGTTCTCGGTATTGAACGAGTCAGTGATCGGCACGGTGAATTTCAGAGATGGATCACTTGTAGAGATAAAAGGATGTGGAGGTGTGAAGATTGAATCGGAGAAAAAAACAGAGAAGCGAGAAGAGAAAAAGAGCGATGGCGAGAAAATCGTTGGCGTTGTGAAGTTTGAATCCGAGGAGAAGAGCGATGGCGTTGTGGCGGAGGTCCAGAATGTGGCAACGGAGGTAGCGAAAGCAAAGGAGATAAAAGAGAAAGACTATTACGATGAGAAGAAGGAGAAGGAGGACGGAAACAATGGCGGTGCTATTGAAAAACAAGTTGCCGGAGAAACAAAAGCAGAGAAGGAAAAGGAGAAGGAGGCCATTGTTTCCGGCAGTGCAATTGAAGTAGCACAGGTAATTAAACTTGTTAAAGAAAAGCCGTTGGCTGGACAAGTAGAACAGGTAATTAAAACTGTCGATGAAAAGCAGTTGCCCATTGAAACGAAGACAGAGAAGAAGGAAGGCAGTGATAATGGCGGCAGCAGCAGCGTTGAACAAGTAATCAAACTGGTGAAAGAAACTATTGATATTGGATGTCATATGTGA MHLAPMHSSIYECFEEKLLARQVEQVIKTVDEKQLPIETKTEKKEGGDNGGNGSVEQVIKLVKETIDIGCHYVKAKQVERNNCMGIQLHGLQRNKRWWHFHPVKRSILQQQRGYMPKIMPKNDNNTGERGESSKSATKEGLVSLQYPTLSRTNYSTWAMKMKVYLRAQGVWDAIESTESLDSLNERKDQMALVAIYQAILEKMFLLAEKETAREARQTLKTIHVRAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTGAVNKIRTFGDKFEEAYLVKKFLHSVPSKFLHITSAIEQFADLKVMTMEEVIGRLKAYEEWISGNKENAEHVLLTQGEWKAKESKGKGESSTFEKKRSDNGGHCRGRGRNGRWRGRGHGCGNDSLHQEKKGDKSKIGHYASHCRLKKRENQAHLTETQSDEDELALLMVQVCEVRTLGSPELTEMAHYEEKVVPEEIEKKSNTWFLDTGASNHMTGCRSWFSVLNESVIGTVNFRDGSLVEIKGCGGVKIESEKKTEKREEKKSDGEKIVGVVKFESEEKSDGVVAEVQNVATEVAKAKEIKEKDYYDEKKEKEDGNNGGAIEKQVAGETKAEKEKEKEAIVSGSAIEVAQVIKLVKEKPLAGQVEQVIKTVDEKQLPIETKTEKKEGSDNGGSSSVEQVIKLVKETIDIGCHM
BLAST of CmaCh18G005920 vs. TrEMBL
Match: A0A0A9DE89_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 3.1e-62 Identity = 142/302 (47.02%), Postives = 195/302 (64.57%), Query Frame = 1
BLAST of CmaCh18G005920 vs. TrEMBL
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g05850 PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 2.3e-52 Identity = 147/390 (37.69%), Postives = 213/390 (54.62%), Query Frame = 1
BLAST of CmaCh18G005920 vs. TrEMBL
Match: Q0J5Y3_ORYSJ (Os08g0389500 protein OS=Oryza sativa subsp. japonica GN=Os08g0389500 PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 2.3e-52 Identity = 154/395 (38.99%), Postives = 212/395 (53.67%), Query Frame = 1
BLAST of CmaCh18G005920 vs. TrEMBL
Match: Q25AF6_ORYSA (H0512B01.8 protein OS=Oryza sativa GN=H0512B01.8 PE=4 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 8.6e-52 Identity = 156/437 (35.70%), Postives = 234/437 (53.55%), Query Frame = 1
BLAST of CmaCh18G005920 vs. TrEMBL
Match: C6JSM1_SORBI (Putative uncharacterized protein Sb1475s002010 OS=Sorghum bicolor GN=Sb1475s002010 PE=4 SV=1) HSP 1 Score: 211.1 bits (536), Expect = 4.3e-51 Identity = 144/377 (38.20%), Postives = 208/377 (55.17%), Query Frame = 1
BLAST of CmaCh18G005920 vs. NCBI nr
Match: gi|727619972|ref|XP_010480731.1| (PREDICTED: uncharacterized protein LOC104759517 [Camelina sativa]) HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53 Identity = 158/409 (38.63%), Postives = 238/409 (58.19%), Query Frame = 1
BLAST of CmaCh18G005920 vs. NCBI nr
Match: gi|922464861|ref|XP_013633028.1| (PREDICTED: uncharacterized protein LOC106338643 [Brassica oleracea var. oleracea]) HSP 1 Score: 215.7 bits (548), Expect = 2.5e-52 Identity = 148/399 (37.09%), Postives = 228/399 (57.14%), Query Frame = 1
BLAST of CmaCh18G005920 vs. NCBI nr
Match: gi|923695303|ref|XP_013657908.1| (PREDICTED: uncharacterized protein LOC106362576 [Brassica napus]) HSP 1 Score: 215.7 bits (548), Expect = 2.5e-52 Identity = 151/408 (37.01%), Postives = 235/408 (57.60%), Query Frame = 1
BLAST of CmaCh18G005920 vs. NCBI nr
Match: gi|113623687|dbj|BAF23632.1| (Os08g0389500 [Oryza sativa Japonica Group]) HSP 1 Score: 215.3 bits (547), Expect = 3.2e-52 Identity = 154/395 (38.99%), Postives = 212/395 (53.67%), Query Frame = 1
BLAST of CmaCh18G005920 vs. NCBI nr
Match: gi|108706239|gb|ABF94034.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]) HSP 1 Score: 215.3 bits (547), Expect = 3.2e-52 Identity = 147/390 (37.69%), Postives = 213/390 (54.62%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |