CmaCh18G005770 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G005770
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ATP synthase subunit alpha, chloroplastic
Location	Cma_Chr18 : 3886148 .. 3886663 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACTCCGCGAGGGGGGCCATTGAACAGCTGGAAAAAGTCTGGGCCTGCTTACGAAAAGTCGAAATGGAAGCGGATCAGTTTAGAGTGAATGAATACTCTGAGATAGAATGAGAAAAATGGAATTTGATTAGTTCAACTTCTAAAAGTTTGGAACAATTAGAAAATTAGGAAAATGAAACATTTGTTTTGAACACCAAAAAGCCATTAATCAAGTACGACAACAGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTGAATAGTTGTTTGAACAACGAGCTACGTTTACGTACCATCAATGCTAATATTTCCATTTCAAGCAAATGAAATTAGTAATATTATTCGTGAACGTATTGAGCAATATAATAGAGAAGTCAAAATTGTAAATACCGGTATTGTACTTCAAGTAGGCGACGACATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTTCATTAGTCGAATTTGAAGAGGGTGCTATAGGCATAGCTCTAAATTGA

mRNA sequence

ATGAAGAACTCCGCGAGGGGGGCCATTGAACAGCTGGAAAAAGTCTGGGCCTGCTTACGAAAAGTCGAAATGGAAGCGGATCAAGAAGTCAAAATTGTAAATACCGGTATTGTACTTCAAGTAGGCGACGACATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTTCATTAGTCGAATTTGAAGAGGGTGCTATAGGCATAGCTCTAAATTGA

Coding sequence (CDS)

ATGAAGAACTCCGCGAGGGGGGCCATTGAACAGCTGGAAAAAGTCTGGGCCTGCTTACGAAAAGTCGAAATGGAAGCGGATCAAGAAGTCAAAATTGTAAATACCGGTATTGTACTTCAAGTAGGCGACGACATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTTCATTAGTCGAATTTGAAGAGGGTGCTATAGGCATAGCTCTAAATTGA

Protein sequence

MKNSARGAIEQLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN

Homology

[Close]

BLAST of CmaCh18G005770 vs. Swiss-Prot
Match: ATPA_OENPA (ATP synthase subunit alpha, chloroplastic OS=Oenothera parviflora GN=atpA PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-14
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770 vs. Swiss-Prot
Match: ATPA_OENGL (ATP synthase subunit alpha, chloroplastic OS=Oenothera glazioviana GN=atpA PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-14
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770 vs. Swiss-Prot
Match: ATPA_AETGR (ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflorum GN=atpA PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-14
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770 vs. Swiss-Prot
Match: ATPA_POPAL (ATP synthase subunit alpha, chloroplastic OS=Populus alba GN=atpA PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-14
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770 vs. Swiss-Prot
Match: ATPA_OENEH (ATP synthase subunit alpha, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpA PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-14
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770 vs. TrEMBL
Match: A0A0S2IH79_CUCPE (ATP synthase subunit alpha OS=Cucurbita pepo subsp. fraterna GN=atpA PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-13
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q  ++   +R+   + ++EVKIVNTGIVLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QANEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770 vs. TrEMBL
Match: A0A0S2IEL2_9ROSI (ATP synthase subunit alpha OS=Cucurbita ecuadorensis GN=atpA PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-13
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q  ++   +R+   + ++EVKIVNTGIVLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QANEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770 vs. TrEMBL
Match: A0A0X8HMW3_9MAGN (ATP synthase subunit alpha, chloroplastic OS=Akebia trifoliata GN=atpA PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-13
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          D+EVKIVNTGIVLQVGD IARI+GLDEVMAG LVEFEEG IGIALN
Sbjct: 21 DREVKIVNTGIVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770 vs. TrEMBL
Match: A0A0S2IF15_9ROSI (ATP synthase subunit alpha OS=Cucurbita foetidissima GN=atpA PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-13
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q  ++   +R+   + ++EVKIVNTGIVLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QANEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770 vs. TrEMBL
Match: A0A0S2IHI4_CUCPE (ATP synthase subunit alpha OS=Cucurbita pepo var. texana GN=atpA PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-13
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q  ++   +R+   + ++EVKIVNTGIVLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QANEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770 vs. TAIR10
Match: ATCG00120.1 (ATCG00120.1 ATP synthase subunit alpha)

HSP 1 Score: 77.0 bits (188), Expect = 5.2e-15
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EV IVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVTIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770 vs. NCBI nr
Match: gi|1002164216|ref|YP_009234371.1| (ATP synthase CF1 alpha subunit (chloroplast) [Akebia trifoliata])

HSP 1 Score: 81.3 bits (199), Expect = 7.8e-13
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          D+EVKIVNTGIVLQVGD IARI+GLDEVMAG LVEFEEG IGIALN
Sbjct: 21 DREVKIVNTGIVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770 vs. NCBI nr
Match: gi|952954756|gb|ALO22114.1| (AtpA (plastid) [Cucurbita ficifolia])

HSP 1 Score: 81.3 bits (199), Expect = 7.8e-13
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q  ++   +R+   + ++EVKIVNTGIVLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QANEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770 vs. NCBI nr
Match: gi|952955021|gb|ALO22375.1| (AtpA (plastid) [Cucurbita moschata])

HSP 1 Score: 81.3 bits (199), Expect = 7.8e-13
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q  ++   +R+   + ++EVKIVNTGIVLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QANEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770 vs. NCBI nr
Match: gi|952954380|gb|ALO21744.1| (AtpA (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 81.3 bits (199), Expect = 7.8e-13
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q  ++   +R+   + ++EVKIVNTGIVLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QANEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770 vs. NCBI nr
Match: gi|952954543|gb|ALO21904.1| (AtpA (plastid) [Cucurbita cordata])

HSP 1 Score: 81.3 bits (199), Expect = 7.8e-13
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q  ++   +R+   + ++EVKIVNTGIVLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QANEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

The following BLAST results are available for this feature:

BLAST of CmaCh18G005770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATPA_OENPA	1.9e-14	86.96	ATP synthase subunit alpha, chloroplastic OS=Oenothera parviflora GN=atpA PE=3 S...	[more]
ATPA_OENGL	1.9e-14	86.96	ATP synthase subunit alpha, chloroplastic OS=Oenothera glazioviana GN=atpA PE=3 ...	[more]
ATPA_AETGR	1.9e-14	86.96	ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflorum GN=atpA PE=...	[more]
ATPA_POPAL	1.9e-14	86.96	ATP synthase subunit alpha, chloroplastic OS=Populus alba GN=atpA PE=3 SV=1	[more]
ATPA_OENEH	1.9e-14	86.96	ATP synthase subunit alpha, chloroplastic OS=Oenothera elata subsp. hookeri GN=a...	[more]

BLAST of CmaCh18G005770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IH79_CUCPE	5.4e-13	69.35	ATP synthase subunit alpha OS=Cucurbita pepo subsp. fraterna GN=atpA PE=3 SV=1	[more]
A0A0S2IEL2_9ROSI	5.4e-13	69.35	ATP synthase subunit alpha OS=Cucurbita ecuadorensis GN=atpA PE=3 SV=1	[more]
A0A0X8HMW3_9MAGN	5.4e-13	89.13	ATP synthase subunit alpha, chloroplastic OS=Akebia trifoliata GN=atpA PE=3 SV=1	[more]
A0A0S2IF15_9ROSI	5.4e-13	69.35	ATP synthase subunit alpha OS=Cucurbita foetidissima GN=atpA PE=3 SV=1	[more]
A0A0S2IHI4_CUCPE	5.4e-13	69.35	ATP synthase subunit alpha OS=Cucurbita pepo var. texana GN=atpA PE=3 SV=1	[more]

BLAST of CmaCh18G005770 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00120.1	5.2e-15	84.78	ATCG00120.1 ATP synthase subunit alpha	[more]

BLAST of CmaCh18G005770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1002164216\|ref\|YP_009234371.1\|	7.8e-13	89.13	ATP synthase CF1 alpha subunit (chloroplast) [Akebia trifoliata]	[more]
gi\|952954756\|gb\|ALO22114.1\|	7.8e-13	69.35	AtpA (plastid) [Cucurbita ficifolia]	[more]
gi\|952955021\|gb\|ALO22375.1\|	7.8e-13	69.35	AtpA (plastid) [Cucurbita moschata]	[more]
gi\|952954380\|gb\|ALO21744.1\|	7.8e-13	69.35	AtpA (plastid) [Cucurbita argyrosperma]	[more]
gi\|952954543\|gb\|ALO21904.1\|	7.8e-13	69.35	AtpA (plastid) [Cucurbita cordata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004100	ATPase_F1/V1/A1_a/bsu_N
IPR023366	ATP_synth_asu-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0015992	proton transport
GO:0046034	ATP metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0015992	proton transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G005770.1	CmaCh18G005770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004100	ATPase, F1 complex alpha/beta subunit, N-terminal domain	PFAM	PF02874	ATP-synt_ab_N	coord: 35..72 score: 2.
IPR004100	ATPase, F1 complex alpha/beta subunit, N-terminal domain	unknown	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 21..72 score: 1.07
IPR023366	ATP synthase subunit alpha-like domain	GENE3D	G3DSA:2.40.30.20		coord: 13..72 score: 3.0
None	No IPR available	PANTHER	PTHR15184	ATP SYNTHASE	coord: 27..72 score: 1.7
None	No IPR available	PANTHER	PTHR15184:SF42	ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTIC	coord: 27..72 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G005770	Cucumber (Gy14) v2	cgybcmaB771
CmaCh18G005770	Melon (DHL92) v3.6.1	cmamedB414
CmaCh18G005770	Melon (DHL92) v3.6.1	cmamedB423
CmaCh18G005770	Silver-seed gourd	carcmaB0149
CmaCh18G005770	Silver-seed gourd	carcmaB0907
CmaCh18G005770	Cucumber (Chinese Long) v3	cmacucB0509
CmaCh18G005770	Watermelon (97103) v2	cmawmbB402
CmaCh18G005770	Watermelon (97103) v2	cmawmbB394
CmaCh18G005770	Wax gourd	cmawgoB0515
CmaCh18G005770	Wax gourd	cmawgoB0532
CmaCh18G005770	Cucurbita maxima (Rimu)	cmacmaB216
CmaCh18G005770	Cucurbita maxima (Rimu)	cmacmaB399
CmaCh18G005770	Cucumber (Gy14) v1	cgycmaB0040
CmaCh18G005770	Cucumber (Gy14) v1	cgycmaB0914
CmaCh18G005770	Cucurbita moschata (Rifu)	cmacmoB398
CmaCh18G005770	Cucurbita moschata (Rifu)	cmacmoB407
CmaCh18G005770	Cucurbita moschata (Rifu)	cmacmoB419
CmaCh18G005770	Cucurbita moschata (Rifu)	cmacmoB428
CmaCh18G005770	Wild cucumber (PI 183967)	cmacpiB428
CmaCh18G005770	Wild cucumber (PI 183967)	cmacpiB404
CmaCh18G005770	Cucumber (Chinese Long) v2	cmacuB400
CmaCh18G005770	Cucumber (Chinese Long) v2	cmacuB425
CmaCh18G005770	Melon (DHL92) v3.5.1	cmameB364
CmaCh18G005770	Watermelon (Charleston Gray)	cmawcgB342
CmaCh18G005770	Watermelon (Charleston Gray)	cmawcgB349
CmaCh18G005770	Watermelon (97103) v1	cmawmB385
CmaCh18G005770	Watermelon (97103) v1	cmawmB389
CmaCh18G005770	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G005770	Cucurbita pepo (Zucchini)	cmacpeB419
CmaCh18G005770	Cucurbita pepo (Zucchini)	cmacpeB438
CmaCh18G005770	Cucurbita pepo (Zucchini)	cmacpeB448
CmaCh18G005770	Bottle gourd (USVL1VR-Ls)	cmalsiB367
CmaCh18G005770	Bottle gourd (USVL1VR-Ls)	cmalsiB369