CmaCh18G005540 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G005540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transposon Ty1-H Gag-Pol polyprotein
Location	Cma_Chr18 : 3630423 .. 3631076 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGAGTCCGCAAAACTACCAAAGGGACATCGAGCAATCAGGTTGAAATGGGTATATAAGTTGAAGAGAAATTCGGATGGGGAGATCGTGAGGTATAAAGCCCGTTTAGTCGCAAAGGGTTTTGTCCAGAAATATGGAGTGGATTTTGATGAGGTATTTGCACCTGTTGCAAGGCTTGAAACAGTGCGAGTCTTGATTGCTATAGCAGCGCAGGAGAGTTGGGAGATTCATCATATGGATGTCAAGTCAGCGTTTCTTAATGGTGAGCTGAAGGAAGAGGTTTATGTAGAACTACCAGAAGGATTTGCTGTGGAAGGTCGAGAAGGGAATGTTTTACGACTTAGGAAAGCATTGTACGGCTTACGTCAAGCACCTCGTGCCTGGAATGCAAAACTGGATAGTTGCTTAAAGTCTCTTGGATTTCAAAAGTGTCCTTTACAGCATGCTGTGTATACACGTTGGAAAGAAAATAAAATTCAGATAGTTGGAGTTTATGTTGATGATTTAATTATTGTCGGGTCAAGCAATGATGATATTTTGAGCTTCAAGCAACAAATGAAGAAGTTGTTTGAAATGAGTGATTTAGGATTGTTGTCTTATTATTTGGGAATAGAAGTTAAACAAGATGTTGACGGAATCAGGTTATCTTAG

mRNA sequence

ATGTGGGAGTCCGCAAAACTACCAAAGGGACATCGAGCAATCAGGTTGAAATGGGTATATAAGTTGAAGAGAAATTCGGATGGGGAGATCGTGAGGTATAAAGCCCGTTTAGTCGCAAAGGGTTTTGTCCAGAAATATGGAGTGGATTTTGATGAGGTATTTGCACCTGTTGCAAGGCTTGAAACAGTGCGAGTCTTGATTGCTATAGCAGCGCAGGAGAGTTGGGAGATTCATCATATGGATGTCAAGTCAGCGTTTCTTAATGGTGAGCTGAAGGAAGAGGTTTATGTAGAACTACCAGAAGGATTTGCTGTGGAAGGTCGAGAAGGGAATGTTTTACGACTTAGGAAAGCATTGTACGGCTTACGTCAAGCACCTCGTGCCTGGAATGCAAAACTGGATAGTTGCTTAAAGTCTCTTGGATTTCAAAAGTGTCCTTTACAGCATGCTGTGTATACACGTTGGAAAGAAAATAAAATTCAGATAGTTGGAGTTTATGTTGATGATTTAATTATTGTCGGGTCAAGCAATGATGATATTTTGAGCTTCAAGCAACAAATGAAGAAGTTGTTTGAAATGAGTGATTTAGGATTGTTGTCTTATTATTTGGGAATAGAAGTTAAACAAGATGTTGACGGAATCAGGTTATCTTAG

Coding sequence (CDS)

ATGTGGGAGTCCGCAAAACTACCAAAGGGACATCGAGCAATCAGGTTGAAATGGGTATATAAGTTGAAGAGAAATTCGGATGGGGAGATCGTGAGGTATAAAGCCCGTTTAGTCGCAAAGGGTTTTGTCCAGAAATATGGAGTGGATTTTGATGAGGTATTTGCACCTGTTGCAAGGCTTGAAACAGTGCGAGTCTTGATTGCTATAGCAGCGCAGGAGAGTTGGGAGATTCATCATATGGATGTCAAGTCAGCGTTTCTTAATGGTGAGCTGAAGGAAGAGGTTTATGTAGAACTACCAGAAGGATTTGCTGTGGAAGGTCGAGAAGGGAATGTTTTACGACTTAGGAAAGCATTGTACGGCTTACGTCAAGCACCTCGTGCCTGGAATGCAAAACTGGATAGTTGCTTAAAGTCTCTTGGATTTCAAAAGTGTCCTTTACAGCATGCTGTGTATACACGTTGGAAAGAAAATAAAATTCAGATAGTTGGAGTTTATGTTGATGATTTAATTATTGTCGGGTCAAGCAATGATGATATTTTGAGCTTCAAGCAACAAATGAAGAAGTTGTTTGAAATGAGTGATTTAGGATTGTTGTCTTATTATTTGGGAATAGAAGTTAAACAAGATGTTGACGGAATCAGGTTATCTTAG

Protein sequence

MWESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLETVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYGLRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGSSNDDILSFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGIRLS

Homology

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BLAST of CmaCh18G005540 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.2e-50
Identity = 96/210 (45.71%), Postives = 144/210 (68.57%), Query Frame = 1


Query: 2    WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
            ++  +LPKG R ++ KWV+KLK++ D ++VRYKARLV KGF QK G+DFDE+F+PV ++ 
Sbjct: 843  YKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMT 902

Query: 62   TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYG 121
            ++R ++++AA    E+  +DVK+AFL+G+L+EE+Y+E PEGF V G++  V +L K+LYG
Sbjct: 903  SIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYG 962

Query: 122  LRQAPRAWNAKLDSCLKSLGFQKCPLQHAVY-TRWKENKIQIVGVYVDDLIIVGSSNDDI 181
            L+QAPR W  K DS +KS  + K      VY  R+ EN   I+ +YVDD++IVG     I
Sbjct: 963  LKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLI 1022

Query: 182  LSFKQQMKKLFEMSDLGLLSYYLGIEVKQD 211
               K  + K F+M DLG     LG+++ ++
Sbjct: 1023 AKLKGDLSKSFDMKDLGPAQQILGMKIVRE 1052

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BLAST of CmaCh18G005540 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 171.0 bits (432), Expect = 1.4e-41
Identity = 85/218 (38.99%), Postives = 131/218 (60.09%), Query Frame = 1


Query: 2    WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
            W   K P+    +  +WV+ +K N  G  +RYKARLVA+GF QKY +D++E FAPVAR+ 
Sbjct: 923  WTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARIS 982

Query: 62   TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYG 121
            + R ++++  Q + ++H MDVK+AFLNG LKEE+Y+ LP+G  +     NV +L KA+YG
Sbjct: 983  SFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYG 1042

Query: 122  LRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGV--YVDDLIIVGSSNDD 181
            L+QA R W    +  LK   F    +   +Y   K N  + + V  YVDD++I       
Sbjct: 1043 LKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTR 1102

Query: 182  ILSFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGIRLS 218
            + +FK+ + + F M+DL  + +++GI ++   D I LS
Sbjct: 1103 MNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLS 1138

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BLAST of CmaCh18G005540 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 6.8e-20
Identity = 50/134 (37.31%), Postives = 75/134 (55.97%), Query Frame = 1


Query: 80  MDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYGLRQAPRAWNAKLDSCLKS 139
           MDV +AFLN  + E +YV+ P GF  E     V  L   +YGL+QAP  WN  +++ LK 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 140 LGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGSSNDDILSFKQQMKKLFEMSDLGLL 199
           +GF +   +H +Y R   +    + VYVDDL++   S       KQ++ KL+ M DLG +
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 200 SYYLGIEVKQDVDG 214
             +LG+ + Q  +G
Sbjct: 121 DKFLGLNIHQSSNG 134

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BLAST of CmaCh18G005540 vs. Swiss-Prot
Match: YJ41B_YEAST (Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-J PE=3 SV=3)

HSP 1 Score: 79.0 bits (193), Expect = 7.3e-14
Identity = 49/167 (29.34%), Postives = 82/167 (49.10%), Query Frame = 1


Query: 33   YKARLVAKGFVQKYGVDFDEVFAPVARLETVRVLIAIAAQESWEIHHMDVKSAFLNGELK 92
            YKAR+V +G  Q     +  +         +++ + IA   +  +  +D+  AFL  +L+
Sbjct: 1337 YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLE 1396

Query: 93   EEVYVELPEGFAVEGREGNVLRLRKALYGLRQAPRAWNAKLDSCLKSLGFQKCPLQHAVY 152
            EE+Y+  P           V++L KALYGL+Q+P+ WN  L   L  +G +       +Y
Sbjct: 1397 EEIYIPHPHDRRC------VVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLY 1456

Query: 153  TRWKENKIQIVGVYVDDLIIVGSSNDDILSFKQQMKKLFEMSDLGLL 200
                E+K  ++ VYVDD +I  S+   +  F  ++K  FE+   G L
Sbjct: 1457 Q--TEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTL 1494

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BLAST of CmaCh18G005540 vs. Swiss-Prot
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.3e-14
Identity = 49/167 (29.34%), Postives = 82/167 (49.10%), Query Frame = 1


Query: 33   YKARLVAKGFVQKYGVDFDEVFAPVARLETVRVLIAIAAQESWEIHHMDVKSAFLNGELK 92
            YKAR+V +G  Q     +  +         +++ + IA   +  +  +D+  AFL  +L+
Sbjct: 1336 YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLE 1395

Query: 93   EEVYVELPEGFAVEGREGNVLRLRKALYGLRQAPRAWNAKLDSCLKSLGFQKCPLQHAVY 152
            EE+Y+  P           V++L KALYGL+Q+P+ WN  L   L  +G +       +Y
Sbjct: 1396 EEIYIPHPHDRRC------VVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLY 1455

Query: 153  TRWKENKIQIVGVYVDDLIIVGSSNDDILSFKQQMKKLFEMSDLGLL 200
                E+K  ++ VYVDD +I  S+   +  F  ++K  FE+   G L
Sbjct: 1456 Q--TEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTL 1493

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BLAST of CmaCh18G005540 vs. TrEMBL
Match: I1HKQ7_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 4.4e-82
Identity = 151/213 (70.89%), Postives = 177/213 (83.10%), Query Frame = 1


Query: 2    WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
            WE   LP+GH+AI LKWVYK+K+NS+G+IV+YKARLVAKG+ Q++GVDFDEVFAPVAR+E
Sbjct: 1001 WEEDVLPRGHKAIGLKWVYKVKKNSEGDIVKYKARLVAKGYAQRHGVDFDEVFAPVARME 1060

Query: 62   TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYG 121
            TVRVL+++AA E WE+HHMDVKSAFLNG+L EEVYV+ P GF    REG VLRL KALYG
Sbjct: 1061 TVRVLLSLAAHEGWEVHHMDVKSAFLNGDLAEEVYVQQPPGFPSACREGKVLRLSKALYG 1120

Query: 122  LRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGSSNDDIL 181
            LRQAPRAWNAKLD+ L SLGF+KCP++HAVY R +  K  +VGVYVDDLII GS  + I 
Sbjct: 1121 LRQAPRAWNAKLDNTLLSLGFEKCPMEHAVYRRREGQKNLLVGVYVDDLIITGSEVEVIN 1180

Query: 182  SFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGI 215
             FK QMK LF MSDLG LSYYLG+EVKQ  +GI
Sbjct: 1181 GFKDQMKALFSMSDLGKLSYYLGVEVKQSKNGI 1213

[Close]

BLAST of CmaCh18G005540 vs. TrEMBL
Match: W5I9Q0_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.9e-78
Identity = 146/216 (67.59%), Postives = 174/216 (80.56%), Query Frame = 1


Query: 2   WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
           W+  +LPKG + I LKW+YKLK++S   +V++KARLVAKG+VQ+ G+DFDEVFAPVAR+E
Sbjct: 43  WKMCELPKGQKPIGLKWIYKLKKDSSRNVVKHKARLVAKGYVQRQGIDFDEVFAPVARME 102

Query: 62  TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYG 121
           TVR+L+A+AA E WEIHHMDVKSAFLNGEL+EEVYV  P GF VEG E  VL+L KALYG
Sbjct: 103 TVRLLLALAANEGWEIHHMDVKSAFLNGELEEEVYVAQPSGFVVEGEEHKVLKLHKALYG 162

Query: 122 LRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGSSNDDIL 181
           LRQAPRAWNAKLD  L +LGF+KCP + A+Y R K+    +VGVYVDDL+I G +  DI 
Sbjct: 163 LRQAPRAWNAKLDRTLINLGFEKCPSEPALYKRNKKGAALLVGVYVDDLVITGRNVADIE 222

Query: 182 SFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGIRLS 218
           +FK QMK LF MSDLGLLSYYLGIEVKQ   GI L+
Sbjct: 223 AFKVQMKSLFSMSDLGLLSYYLGIEVKQTPQGIYLN 258

[Close]

BLAST of CmaCh18G005540 vs. TrEMBL
Match: W5EKJ5_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 4.2e-77
Identity = 143/216 (66.20%), Postives = 173/216 (80.09%), Query Frame = 1


Query: 2   WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
           W+   LP G + I LKWVYKLK++S G +V+YKARLVA+G+VQ+ G+DF+EVFAPVARLE
Sbjct: 35  WQLTTLPPGQKPIGLKWVYKLKKDSAGRVVKYKARLVAEGYVQRPGIDFEEVFAPVARLE 94

Query: 62  TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYG 121
           TVR+LIA+AAQE WE+HHMDVKSAFLNG+L EEVYV  P G+  +G E  VL+L KALYG
Sbjct: 95  TVRLLIALAAQEKWELHHMDVKSAFLNGDLFEEVYVTQPPGYEKKGDEDKVLKLSKALYG 154

Query: 122 LRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGSSNDDIL 181
           LRQAPRAWN+KLD  L S+GF+KCPL+HAVY ++  N   +VGVYVDDLII G S+ +I 
Sbjct: 155 LRQAPRAWNSKLDQTLVSMGFEKCPLEHAVYKKFSGNSTLLVGVYVDDLIITGGSSKEIA 214

Query: 182 SFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGIRLS 218
             K+QMK+ F MSDLGLLSYYLGIEVKQ    I +S
Sbjct: 215 EIKEQMKRKFCMSDLGLLSYYLGIEVKQTQSAITIS 250

[Close]

BLAST of CmaCh18G005540 vs. TrEMBL
Match: Q7XQG8_ORYSJ (OJ000114_01.9 protein OS=Oryza sativa subsp. japonica GN=OJ000114_01.9 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.5e-77
Identity = 139/215 (64.65%), Postives = 174/215 (80.93%), Query Frame = 1


Query: 2    WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
            WE A LP+GHRAI LKWV+KLKR+  G IV++KARLVA+GFVQ+ G+D+D+ FAPVAR+E
Sbjct: 1115 WELADLPRGHRAITLKWVFKLKRDEAGAIVKHKARLVARGFVQQEGIDYDDAFAPVARME 1174

Query: 62   TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYG 121
            +VR+L+A+AAQE W +HHMDVKSAFLNG+LKEEVYV  P GF + G+EG VLRL KALYG
Sbjct: 1175 SVRLLLALAAQEGWGVHHMDVKSAFLNGDLKEEVYVHQPPGFVIPGKEGKVLRLHKALYG 1234

Query: 122  LRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGSSNDDIL 181
            LRQAPRAWNAKLDS LK +GF++ P + A+Y R       +VGVYVDDL+I G+ + ++ 
Sbjct: 1235 LRQAPRAWNAKLDSTLKGMGFEQSPHEAAIYRRGNGGNALLVGVYVDDLVITGTKDAEVA 1294

Query: 182  SFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGIRL 217
            +FK++MK  F+MSDLG LS+YLGIEV QD  GI L
Sbjct: 1295 AFKEEMKATFQMSDLGPLSFYLGIEVHQDNSGITL 1329

[Close]

BLAST of CmaCh18G005540 vs. TrEMBL
Match: Q2QMT8_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g40060 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.5e-77
Identity = 139/215 (64.65%), Postives = 174/215 (80.93%), Query Frame = 1


Query: 2    WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
            WE A LP+GHRAI LKWV+KLKR+  G IV++KARLVA+GFVQ+ G+D+D+ FAPVAR+E
Sbjct: 1049 WELADLPRGHRAITLKWVFKLKRDEAGAIVKHKARLVARGFVQREGIDYDDAFAPVARME 1108

Query: 62   TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYG 121
            +VR L+A+AAQE W +HHMDVKSAFLNG+LKEEVYV  P GF + G+EG VLRL KALYG
Sbjct: 1109 SVRFLLALAAQEGWGVHHMDVKSAFLNGDLKEEVYVHQPPGFVIPGKEGKVLRLHKALYG 1168

Query: 122  LRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGSSNDDIL 181
            LRQAPRAWNAKLDS LK +GF++ P + A+Y R       +VGVYVDDL+I G+ + +++
Sbjct: 1169 LRQAPRAWNAKLDSTLKGMGFEQSPHEAAIYRRGNLGNALLVGVYVDDLVITGTKDAEVV 1228

Query: 182  SFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGIRL 217
            +FK++MK  F+MSDLG LS+YLGIEV QD  GI L
Sbjct: 1229 AFKEEMKATFQMSDLGPLSFYLGIEVHQDNSGITL 1263

[Close]

BLAST of CmaCh18G005540 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 185.7 bits (470), Expect = 3.1e-47
Identity = 93/221 (42.08%), Postives = 139/221 (62.90%), Query Frame = 1


Query: 2   WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
           WE   LP   + I  KWVYK+K NSDG I RYKARLVAKG+ Q+ G+DF E F+PV +L 
Sbjct: 115 WEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLT 174

Query: 62  TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGN------VLRL 121
           +V++++AI+A  ++ +H +D+ +AFLNG+L EE+Y++LP G+A   R+G+      V  L
Sbjct: 175 SVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA--ARQGDSLPPNAVCYL 234

Query: 122 RKALYGLRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGS 181
           +K++YGL+QA R W  K    L   GF +    H  + +        V VYVDD+II  +
Sbjct: 235 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 294

Query: 182 SNDDILSFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGIRL 217
           ++  +   K Q+K  F++ DLG L Y+LG+E+ +   GI +
Sbjct: 295 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINI 333

[Close]

BLAST of CmaCh18G005540 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-11
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1


Query: 2   WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
           W     P     +  KWV+K K +SDG + R KARLVAKGF Q+ G+ F E ++PV R  
Sbjct: 57  WILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTA 116

Query: 62  TVRVLIAIAAQ 73
           T+R ++ +A Q
Sbjct: 117 TIRTILNVAQQ 127

[Close]

BLAST of CmaCh18G005540 vs. NCBI nr
Match: gi|77556357|gb|ABA99153.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 295.4 bits (755), Expect = 7.9e-77
Identity = 139/215 (64.65%), Postives = 174/215 (80.93%), Query Frame = 1


Query: 2    WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
            WE A LP+GHRAI LKWV+KLKR+  G IV++KARLVA+GFVQ+ G+D+D+ FAPVAR+E
Sbjct: 1049 WELADLPRGHRAITLKWVFKLKRDEAGAIVKHKARLVARGFVQREGIDYDDAFAPVARME 1108

Query: 62   TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYG 121
            +VR L+A+AAQE W +HHMDVKSAFLNG+LKEEVYV  P GF + G+EG VLRL KALYG
Sbjct: 1109 SVRFLLALAAQEGWGVHHMDVKSAFLNGDLKEEVYVHQPPGFVIPGKEGKVLRLHKALYG 1168

Query: 122  LRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGSSNDDIL 181
            LRQAPRAWNAKLDS LK +GF++ P + A+Y R       +VGVYVDDL+I G+ + +++
Sbjct: 1169 LRQAPRAWNAKLDSTLKGMGFEQSPHEAAIYRRGNLGNALLVGVYVDDLVITGTKDAEVV 1228

Query: 182  SFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGIRL 217
            +FK++MK  F+MSDLG LS+YLGIEV QD  GI L
Sbjct: 1229 AFKEEMKATFQMSDLGPLSFYLGIEVHQDNSGITL 1263

[Close]

BLAST of CmaCh18G005540 vs. NCBI nr
Match: gi|39545654|emb|CAE03128.3| (OJ000114_01.9 [Oryza sativa Japonica Group])

HSP 1 Score: 295.4 bits (755), Expect = 7.9e-77
Identity = 139/215 (64.65%), Postives = 174/215 (80.93%), Query Frame = 1


Query: 2    WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
            WE A LP+GHRAI LKWV+KLKR+  G IV++KARLVA+GFVQ+ G+D+D+ FAPVAR+E
Sbjct: 1115 WELADLPRGHRAITLKWVFKLKRDEAGAIVKHKARLVARGFVQQEGIDYDDAFAPVARME 1174

Query: 62   TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYG 121
            +VR+L+A+AAQE W +HHMDVKSAFLNG+LKEEVYV  P GF + G+EG VLRL KALYG
Sbjct: 1175 SVRLLLALAAQEGWGVHHMDVKSAFLNGDLKEEVYVHQPPGFVIPGKEGKVLRLHKALYG 1234

Query: 122  LRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGSSNDDIL 181
            LRQAPRAWNAKLDS LK +GF++ P + A+Y R       +VGVYVDDL+I G+ + ++ 
Sbjct: 1235 LRQAPRAWNAKLDSTLKGMGFEQSPHEAAIYRRGNGGNALLVGVYVDDLVITGTKDAEVA 1294

Query: 182  SFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGIRL 217
            +FK++MK  F+MSDLG LS+YLGIEV QD  GI L
Sbjct: 1295 AFKEEMKATFQMSDLGPLSFYLGIEVHQDNSGITL 1329

[Close]

BLAST of CmaCh18G005540 vs. NCBI nr
Match: gi|12597892|gb|AAG60200.1|AC084763_20 (putative gag-pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 295.4 bits (755), Expect = 7.9e-77
Identity = 139/215 (64.65%), Postives = 174/215 (80.93%), Query Frame = 1


Query: 2    WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
            WE A LP+GHRAI LKWV+KLKR+  G IV++KARLVA+GFVQ+ G+D+D+ FAPVAR+E
Sbjct: 1125 WELADLPRGHRAITLKWVFKLKRDEAGAIVKHKARLVARGFVQQEGIDYDDAFAPVARME 1184

Query: 62   TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYG 121
            +VR+L+A+AAQE W +HHMDVKSAFLNG+LKEEVYV  P GF + G+EG VLRL KALYG
Sbjct: 1185 SVRLLLALAAQEGWGVHHMDVKSAFLNGDLKEEVYVHQPPGFVIPGKEGKVLRLHKALYG 1244

Query: 122  LRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGSSNDDIL 181
            LRQAPRAWNAKLDS LK +GF++ P + A+Y R       +VGVYVDDL+I G+ + ++ 
Sbjct: 1245 LRQAPRAWNAKLDSTLKGMGFEQSPHEAAIYRRGNGGNALLVGVYVDDLVITGTKDAEVA 1304

Query: 182  SFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGIRL 217
            +FK++MK  F+MSDLG LS+YLGIEV QD  GI L
Sbjct: 1305 AFKEEMKATFQMSDLGPLSFYLGIEVHQDNSGITL 1339

[Close]

BLAST of CmaCh18G005540 vs. NCBI nr
Match: gi|32488778|emb|CAE04331.1| (OSJNBb0016D16.22 [Oryza sativa Japonica Group])

HSP 1 Score: 295.4 bits (755), Expect = 7.9e-77
Identity = 139/215 (64.65%), Postives = 174/215 (80.93%), Query Frame = 1


Query: 2    WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
            WE A LP+GHRAI LKWV+KLKR+  G IV++KARLVA+GFVQ+ G+D+D+ FAPVAR+E
Sbjct: 1012 WELADLPRGHRAITLKWVFKLKRDEAGAIVKHKARLVARGFVQQEGIDYDDAFAPVARME 1071

Query: 62   TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYG 121
            +VR+L+A+AAQE W +HHMDVKSAFLNG+LKEEVYV  P GF + G+EG VLRL KALYG
Sbjct: 1072 SVRLLLALAAQEGWGVHHMDVKSAFLNGDLKEEVYVHQPPGFVIPGKEGKVLRLHKALYG 1131

Query: 122  LRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGSSNDDIL 181
            LRQAPRAWNAKLDS LK +GF++ P + A+Y R       +VGVYVDDL+I G+ + ++ 
Sbjct: 1132 LRQAPRAWNAKLDSTLKGMGFEQSPHEAAIYRRGNGGNALLVGVYVDDLVITGTKDAEVA 1191

Query: 182  SFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGIRL 217
            +FK++MK  F+MSDLG LS+YLGIEV QD  GI L
Sbjct: 1192 AFKEEMKATFQMSDLGPLSFYLGIEVHQDNSGITL 1226

[Close]

BLAST of CmaCh18G005540 vs. NCBI nr
Match: gi|77552469|gb|ABA95266.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 294.7 bits (753), Expect = 1.4e-76
Identity = 139/215 (64.65%), Postives = 174/215 (80.93%), Query Frame = 1


Query: 2    WESAKLPKGHRAIRLKWVYKLKRNSDGEIVRYKARLVAKGFVQKYGVDFDEVFAPVARLE 61
            WE A LP+GHRAI LKWV+KLKR+  G IV++KARLVA+GFVQ+ G+D+D+ FAPVAR+E
Sbjct: 902  WELADLPRGHRAITLKWVFKLKRDEAGAIVKHKARLVARGFVQQEGIDYDDAFAPVARME 961

Query: 62   TVRVLIAIAAQESWEIHHMDVKSAFLNGELKEEVYVELPEGFAVEGREGNVLRLRKALYG 121
            +VR+L+A+AAQE W +HHMDVKSAFLNG+LKEEVYV  P GF + G+EG VLRL KALYG
Sbjct: 962  SVRLLLALAAQEGWGVHHMDVKSAFLNGDLKEEVYVHQPPGFVILGKEGKVLRLHKALYG 1021

Query: 122  LRQAPRAWNAKLDSCLKSLGFQKCPLQHAVYTRWKENKIQIVGVYVDDLIIVGSSNDDIL 181
            LRQAPRAWNAKLDS LK +GF++ P + A+Y R       +VGVYVDDL+I G+ + ++ 
Sbjct: 1022 LRQAPRAWNAKLDSTLKGMGFEQSPHEAAIYRRGNGGNALLVGVYVDDLVITGTKDAEVA 1081

Query: 182  SFKQQMKKLFEMSDLGLLSYYLGIEVKQDVDGIRL 217
            +FK++MK  F+MSDLG LS+YLGIEV QD  GI L
Sbjct: 1082 AFKEEMKATFQMSDLGPLSFYLGIEVHQDNSGITL 1116

The following BLAST results are available for this feature:

BLAST of CmaCh18G005540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	2.2e-50	45.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	1.4e-41	38.99	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
YCH4_YEAST	6.8e-20	37.31	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]
YJ41B_YEAST	7.3e-14	29.34	Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YH41B_YEAST	7.3e-14	29.34	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CmaCh18G005540 vs. TrEMBL


Match Name	E-value	Identity	Description
I1HKQ7_BRADI	4.4e-82	70.89	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
W5I9Q0_WHEAT	2.9e-78	67.59	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
W5EKJ5_WHEAT	4.2e-77	66.20	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
Q7XQG8_ORYSJ	5.5e-77	64.65	OJ000114_01.9 protein OS=Oryza sativa subsp. japonica GN=OJ000114_01.9 PE=4 SV=1	[more]
Q2QMT8_ORYSJ	5.5e-77	64.65	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]

BLAST of CmaCh18G005540 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	3.1e-47	42.08	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	8.0e-11	43.66	ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

BLAST of CmaCh18G005540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|77556357\|gb\|ABA99153.1\|	7.9e-77	64.65	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]
gi\|39545654\|emb\|CAE03128.3\|	7.9e-77	64.65	OJ000114_01.9 [Oryza sativa Japonica Group]	[more]
gi\|12597892\|gb\|AAG60200.1\|AC084763_20	7.9e-77	64.65	putative gag-pol polyprotein [Oryza sativa Japonica Group]	[more]
gi\|32488778\|emb\|CAE04331.1\|	7.9e-77	64.65	OSJNBb0016D16.22 [Oryza sativa Japonica Group]	[more]
gi\|77552469\|gb\|ABA95266.1\|	1.4e-76	64.65	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G005540.1	CmaCh18G005540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..217 score: 6.3
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 2..217 score: 6.5E
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 2..217 score: 6.5E
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 4..210 score: 1.78

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G005540	Wax gourd	cmawgoB0532
CmaCh18G005540	Cucurbita maxima (Rimu)	cmacmaB216
CmaCh18G005540	Cucumber (Gy14) v1	cgycmaB0058
CmaCh18G005540	Cucurbita moschata (Rifu)	cmacmoB398
CmaCh18G005540	Cucurbita moschata (Rifu)	cmacmoB407
CmaCh18G005540	Wild cucumber (PI 183967)	cmacpiB404
CmaCh18G005540	Cucumber (Chinese Long) v2	cmacuB400
CmaCh18G005540	Melon (DHL92) v3.5.1	cmameB364
CmaCh18G005540	Watermelon (Charleston Gray)	cmawcgB342
CmaCh18G005540	Watermelon (97103) v1	cmawmB380
CmaCh18G005540	Watermelon (97103) v1	cmawmB385
CmaCh18G005540	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G005540	Cucurbita pepo (Zucchini)	cmacpeB438
CmaCh18G005540	Bottle gourd (USVL1VR-Ls)	cmalsiB369
CmaCh18G005540	Cucumber (Gy14) v2	cgybcmaB096
CmaCh18G005540	Melon (DHL92) v3.6.1	cmamedB423
CmaCh18G005540	Silver-seed gourd	carcmaB1314
CmaCh18G005540	Cucumber (Chinese Long) v3	cmacucB0477
CmaCh18G005540	Watermelon (97103) v2	cmawmbB394