CmaCh18G000290 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G000290
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Peptidyl-tRNA hydrolase family protein
Location	Cma_Chr18 : 115990 .. 116919 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATTGCTGCTTCTCTATCTTCACTCGCCGCCCTGCGCCTTCCTATTTGTCTCCATTGTTTCCCAACCTTCAGAACACCCATTTCCTTCCCTTCTCTATCCTTAAATCCCCCAAGTTTGCATATCTTTTCGTCGATGACTTCTTCCATTACTGCGTCGATGTCCACTTCCTCACCTCTGGCCCCCGATCAGCTTGCTGTGGAGGAGAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTGATCGTTGGCCTTGGGAACCCCGGGAAGAAGTATGAACGCACTCGCCATAATGTCCGTATGGCCCTATCTTTTCGTTTACGAATTGAACTTGCTCTTTTTTGTACCATTTATTCTTTGCGGAAGGATTATTCATTTATAGTATTTATGTAGGAAATTAAATTCTGTTTCATTGAGAACGATGTTGATCGAGACGATTATGCCTTATTTTCTGTTGGATTAACTGGGTATGCCGTTTTTCGCGTGGGAATCCCCTTAGGATAGGTTTTTCGAGCATGAAGTTTGGTTATCTCGAGGAAATTATGATTTATGTCGATTTACAAAGCTGGAGAAGCATGTCTTATCTAGTGCTGTTTTTGTTATTAGCCATAATTGAGTGTTGTCTGGATGTCCTTTATTAAGACGAATTGAAGCATGGCAGTCCCTGATGCTATGATTAATATGATTAATTTTCCAGGTAGGTTTTGAGATGCTGGATGCTGTTGCCGAGGTTGAAGGGATATCCATGAGTAGTGCTTCCTTCAAAGCTCTGATCGGGAAAGGTGTGCAGATTCTAACGATCCCGTTGTTCTTACCTACTGCTTTTTGACAATTCTCGACCGTTGATGAAATTAAAATATCTGGTTAGAACTTAGAAGTACATCTAGCTGCTAGTTTGCTTGCCTTGAACGGGCTTGCTGGTACATTACT

mRNA sequence

ATGAATATTGCTGCTTCTCTATCTTCACTCGCCGCCCTGCGCCTTCCTATTTGTCTCCATTGTTTCCCAACCTTCAGAACACCCATTTCCTTCCCTTCTCTATCCTTAAATCCCCCAAGTTTGCATATCTTTTCGTCGATGACTTCTTCCATTACTGCGTCGATGTCCACTTCCTCACCTCTGGCCCCCGATCAGCTTGCTGTGGAGGAGAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTGATCGTTGGCCTTGGGAACCCCGGGAAGAAGTATGAACGCACTCGCCATAATGTAGGTTTTGAGATGCTGGATGCTGTTGCCGAGGTTGAAGGGATATCCATGAGTAGTGCTTCCTTCAAAGCTCTGATCGGGAAAGGTGTGCAGATTCTAACGATCCCGTTGTTCTTACCTACTGCTTTTTGACAATTCTCGACCGTTGATGAAATTAAAATATCTGGTTAGAACTTAGAAGTACATCTAGCTGCTAGTTTGCTTGCCTTGAACGGGCTTGCTGGTACATTACT

Coding sequence (CDS)

ATGAATATTGCTGCTTCTCTATCTTCACTCGCCGCCCTGCGCCTTCCTATTTGTCTCCATTGTTTCCCAACCTTCAGAACACCCATTTCCTTCCCTTCTCTATCCTTAAATCCCCCAAGTTTGCATATCTTTTCGTCGATGACTTCTTCCATTACTGCGTCGATGTCCACTTCCTCACCTCTGGCCCCCGATCAGCTTGCTGTGGAGGAGAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTGATCGTTGGCCTTGGGAACCCCGGGAAGAAGTATGAACGCACTCGCCATAATGTAGGTTTTGAGATGCTGGATGCTGTTGCCGAGGTTGAAGGGATATCCATGAGTAGTGCTTCCTTCAAAGCTCTGATCGGGAAAGGTGTGCAGATTCTAACGATCCCGTTGTTCTTACCTACTGCTTTTTGA

Protein sequence

MNIAASLSSLAALRLPICLHCFPTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSPLAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASFKALIGKGVQILTIPLFLPTAF

Homology

[Close]

BLAST of CmaCh18G000290 vs. Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-18
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = 1


Query: 45  SSMTSSITASMSTSSPLAPDQLAVEEKKPAPPPK--PWLIVGLGNPGKKYERTRHNVGFE 104
           SS + S +++  +S P +    A+   KP  PP   PWLIVGLGNPGKKY+ TRHNVGFE
Sbjct: 58  SSQSLSFSSNSFSSQPESELLQALPSSKPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFE 117

Query: 105 MLDAVAEVEGISMSSASFKALIGKGVQILTIPLFL 138
           M+DA+A+ EGISM++ +FKAL GKGV I  IP+ L
Sbjct: 118 MVDALADAEGISMNTVNFKALFGKGV-IGNIPIML 151

[Close]

BLAST of CmaCh18G000290 vs. Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-16
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1


Query: 78  KPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASFKALIGKG 128
           KPWL VGLGNPGK Y+ TRHNVGFEM+D +AE EGIS+SS  FKA++GKG
Sbjct: 54  KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKG 103

[Close]

BLAST of CmaCh18G000290 vs. Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.0e-13
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 79  PWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASFKALIGKGVQILTIPLFL 138
           PWLIVGLGNPG KY  TRHNVGFEM+D +A  EG+ M++   KALIG G  I  +P+ L
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGA-IEDVPILL 102

[Close]

BLAST of CmaCh18G000290 vs. Swiss-Prot
Match: CRS2L_ORYSJ (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-12
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1


Query: 79  PWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASFKALIGKGVQILTIPLFL 138
           PWL VGLGNPG+KY+ TRHNVGF+M+D  A+ +GIS++   FKAL G+G+ +  +P+ L
Sbjct: 60  PWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGM-VEGVPVLL 117

[Close]

BLAST of CmaCh18G000290 vs. Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-12
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 78  KPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASFKALIGKGVQILTIPLFL 137
           +PWL +GLGNPG KY+ TRHN+GFEM+D  AE  GI M+  +FKA++G+G  +  +P+ L
Sbjct: 17  RPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGF-VADLPVIL 75

[Close]

BLAST of CmaCh18G000290 vs. TrEMBL
Match: A0A0A0LVQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042230 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 100/138 (72.46%), Postives = 116/138 (84.06%), Query Frame = 1


Query: 1   MNIAASLSSLAALRLPICLHCFPTFRTPISFPSLSL-NPPSLHIFSSMTSSITASMSTSS 60
           M I AS+SS+AALRLP   HCFPT +T ISFPSLSL + P+ HIFSS+TSSITASMSTSS
Sbjct: 1   MIIGASISSVAALRLPFSFHCFPTSKTLISFPSLSLLHSPTFHIFSSITSSITASMSTSS 60

Query: 61  PLAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSAS 120
               +Q A+++KKPAPPPKPWLIVGLGNPGKKY+RTRHNVGFEM+DAVAE EGIS+S+ S
Sbjct: 61  SPTTEQPALDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNVGFEMVDAVAEAEGISISNVS 120

Query: 121 FKALIGKGVQILTIPLFL 138
           FKALIGKG  I  +P+ L
Sbjct: 121 FKALIGKGF-IGDVPVML 137

[Close]

BLAST of CmaCh18G000290 vs. TrEMBL
Match: M5WN23_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010131mg PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.5e-27
Identity = 75/128 (58.59%), Postives = 93/128 (72.66%), Query Frame = 1


Query: 1   MNIAASLSSLAALRLPICLHCFPTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MN+AASLSS+A +R P C  CF + +T I  PS      SL I S  +SS +AS  ++ P
Sbjct: 1   MNVAASLSSIATVRFPNCHRCFRSSKTLI--PS-----SSLRIMSQFSSSPSAS--SAPP 60

Query: 61  LAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASF 120
           ++ +  AVE KKP  P +PWLIVGLGNPGKKY  TRHNVGFEM+DA+AE EGIS+SS SF
Sbjct: 61  MSSNTAAVESKKP--PKQPWLIVGLGNPGKKYHSTRHNVGFEMVDAIAEAEGISLSSVSF 117

Query: 121 KALIGKGV 129
           KAL+GKG+
Sbjct: 121 KALVGKGL 117

[Close]

BLAST of CmaCh18G000290 vs. TrEMBL
Match: V4KY46_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009989mg PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.7e-21
Identity = 76/159 (47.80%), Postives = 95/159 (59.75%), Query Frame = 1


Query: 1   MNIAASLSSLAALRLPICLHCFPTFRTPISFPSLSLN----PP------------SLHIF 60
           M  AA  S  A L LP C  C   FR+P +F S +L+    PP            SL   
Sbjct: 1   MKAAAFPSKFANLSLP-CGRCSLFFRSPATFSSPALSSSTSPPCRMLTRGRKGIESLMSQ 60

Query: 61  SSMTSSITASMSTSSPLAPDQLAVEEKKPAPPPK------PWLIVGLGNPGKKYERTRHN 120
           SS +S + +S+STS    P+   ++ + P+P PK      PWLIVGLGNPGKKY+ TRHN
Sbjct: 61  SSSSSQLFSSLSTSFSSQPESELLQAQLPSPKPKSSPPQLPWLIVGLGNPGKKYQGTRHN 120

Query: 121 VGFEMLDAVAEVEGISMSSASFKALIGKGVQILTIPLFL 138
           VGFEM+DA+A  EGISMS+ +FKAL GKGV I  IP+ L
Sbjct: 121 VGFEMVDALANAEGISMSTVNFKALFGKGV-IGNIPIML 157

[Close]

BLAST of CmaCh18G000290 vs. TrEMBL
Match: M4EAU6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-20
Identity = 72/157 (45.86%), Postives = 89/157 (56.69%), Query Frame = 1


Query: 1   MNIAASLSSLAALRLPICLHCFPTFRTPISFPS--------------------LSLNPPS 60
           M  A   S +A L LP    C   FR+P + PS                    +S +  S
Sbjct: 1   MKAAVFPSKIANLGLPSGHRCALFFRSPPALPSSFFTTPCRKLTRGRRGSEGFMSQSSSS 60

Query: 61  LHIFSSMTSSITASMSTSSPLAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVG 120
             +FSS+++S   S  T S L   QL   + K  PP  PWLIVGLGNPGKKY+ TRHNVG
Sbjct: 61  SQLFSSLSNSF--SSQTESELPQVQLPSPKPKSPPPQLPWLIVGLGNPGKKYQGTRHNVG 120

Query: 121 FEMLDAVAEVEGISMSSASFKALIGKGVQILTIPLFL 138
           FEM+DA+AE EGISM++ +FKAL GKGV I  IP+ L
Sbjct: 121 FEMVDALAEAEGISMNTVNFKALFGKGV-IGNIPIML 154

[Close]

BLAST of CmaCh18G000290 vs. TrEMBL
Match: Q5FAM1_BRAOL (Putative Putative Pepidyl-tRNA hydrolase family protein OS=Brassica oleracea GN=B21F5.5 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.3e-20
Identity = 71/157 (45.22%), Postives = 90/157 (57.32%), Query Frame = 1


Query: 1   MNIAASLSSLAALRLPICLHCFPTFRTPISFPS--------------------LSLNPPS 60
           M  A   S +A+L LP    C   FR+P + PS                    +S +  S
Sbjct: 1   MKAAVFPSKIASLGLPSGHRCALFFRSPPALPSSFSTTPCRKLARGIRGSEGFMSQSSSS 60

Query: 61  LHIFSSMTSSITASMSTSSPLAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVG 120
             +FSS+++S   S  + S L   QL   + K  PP  PWLIVGLGNPGKKY+ TRHNVG
Sbjct: 61  SQLFSSLSNSF--SSQSESELPQVQLPSPKPKSPPPQLPWLIVGLGNPGKKYQGTRHNVG 120

Query: 121 FEMLDAVAEVEGISMSSASFKALIGKGVQILTIPLFL 138
           FEM+DA+AE EGISM++ +FKAL GKGV I  IP+ L
Sbjct: 121 FEMVDALAEAEGISMNTVNFKALFGKGV-IGNIPIML 154

[Close]

BLAST of CmaCh18G000290 vs. TAIR10
Match: AT1G18440.1 (AT1G18440.1 Peptidyl-tRNA hydrolase family protein)

HSP 1 Score: 94.0 bits (232), Expect = 8.0e-20
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = 1


Query: 45  SSMTSSITASMSTSSPLAPDQLAVEEKKPAPPPK--PWLIVGLGNPGKKYERTRHNVGFE 104
           SS + S +++  +S P +    A+   KP  PP   PWLIVGLGNPGKKY+ TRHNVGFE
Sbjct: 58  SSQSLSFSSNSFSSQPESELLQALPSSKPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFE 117

Query: 105 MLDAVAEVEGISMSSASFKALIGKGVQILTIPLFL 138
           M+DA+A+ EGISM++ +FKAL GKGV I  IP+ L
Sbjct: 118 MVDALADAEGISMNTVNFKALFGKGV-IGNIPIML 151

[Close]

BLAST of CmaCh18G000290 vs. TAIR10
Match: AT5G16140.1 (AT5G16140.1 Peptidyl-tRNA hydrolase family protein)

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-14
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 79  PWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASFKALIGKGVQILTIPLFL 138
           PWLIVGLGNPG KY  TRHNVGFEM+D +A  EG+ M++   KALIG G  I  +P+ L
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGA-IEDVPILL 102

[Close]

BLAST of CmaCh18G000290 vs. TAIR10
Match: AT5G19830.1 (AT5G19830.1 Peptidyl-tRNA hydrolase family protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-13
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 78  KPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASFKALIGKGVQILTIPLFL 137
           +PWL +GLGNPG KY+ TRHN+GFEM+D  AE  GI M+  +FKA++G+G  +  +P+ L
Sbjct: 17  RPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGF-VADLPVIL 75

[Close]

BLAST of CmaCh18G000290 vs. TAIR10
Match: AT5G38290.2 (AT5G38290.2 Peptidyl-tRNA hydrolase family protein)

HSP 1 Score: 67.4 bits (163), Expect = 8.1e-12
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 30  SFPSLSLNPPSLHIFSSMTSSIT--ASMSTSSPLAPDQLAVEEKKPAPPPKPWLIVGLGN 89
           S P  S   P  + FS   S+    +S+  S P++ ++L   E        PWLIVGLGN
Sbjct: 10  SSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYT------PWLIVGLGN 69

Query: 90  PGKKYERTRHNVGFEMLDAVAEVEGISMSSASFKALIGKGVQILTIPLFL 138
           PG KY  TRHN+GFEM+D +A    ISM++   KAL+G G  +  +P+ L
Sbjct: 70  PGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIG-SVGEVPILL 112

[Close]

BLAST of CmaCh18G000290 vs. NCBI nr
Match: gi|449439389|ref|XP_004137468.1| (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 100/138 (72.46%), Postives = 116/138 (84.06%), Query Frame = 1


Query: 1   MNIAASLSSLAALRLPICLHCFPTFRTPISFPSLSL-NPPSLHIFSSMTSSITASMSTSS 60
           M I AS+SS+AALRLP   HCFPT +T ISFPSLSL + P+ HIFSS+TSSITASMSTSS
Sbjct: 1   MIIGASISSVAALRLPFSFHCFPTSKTLISFPSLSLLHSPTFHIFSSITSSITASMSTSS 60

Query: 61  PLAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSAS 120
               +Q A+++KKPAPPPKPWLIVGLGNPGKKY+RTRHNVGFEM+DAVAE EGIS+S+ S
Sbjct: 61  SPTTEQPALDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNVGFEMVDAVAEAEGISISNVS 120

Query: 121 FKALIGKGVQILTIPLFL 138
           FKALIGKG  I  +P+ L
Sbjct: 121 FKALIGKGF-IGDVPVML 137

[Close]

BLAST of CmaCh18G000290 vs. NCBI nr
Match: gi|659066706|ref|XP_008457243.1| (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 1.4e-42
Identity = 100/138 (72.46%), Postives = 115/138 (83.33%), Query Frame = 1


Query: 1   MNIAASLSSLAALRLPICLHCFPTFRTPISFPSLSL-NPPSLHIFSSMTSSITASMSTSS 60
           MNI AS+SS+AALRLP  +H F T RT ISFPSLSL + P+ H FSS+TSSITASMSTSS
Sbjct: 1   MNIGASISSVAALRLPFSIHSFRTSRTLISFPSLSLLHSPTFHNFSSITSSITASMSTSS 60

Query: 61  PLAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSAS 120
               DQ A+++KKPAPPPKPWLIVGLGNPGKKY+RTRHNVGFEM+DAVAE EGIS+S+ S
Sbjct: 61  SPTTDQPALDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNVGFEMVDAVAEAEGISISNVS 120

Query: 121 FKALIGKGVQILTIPLFL 138
           FKALIGKG  I  +P+ L
Sbjct: 121 FKALIGKGF-IGDVPVML 137

[Close]

BLAST of CmaCh18G000290 vs. NCBI nr
Match: gi|694317176|ref|XP_009337161.1| (PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 133.7 bits (335), Expect = 2.6e-28
Identity = 73/128 (57.03%), Postives = 89/128 (69.53%), Query Frame = 1


Query: 1   MNIAASLSSLAALRLPICLHCFPTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MN+AASLSS+A +R P C  CF        FP   L  PSL I S  +SS + S ++++P
Sbjct: 1   MNVAASLSSIATVRFPNCHRCF-------RFPKPLLRSPSLQIMSQFSSSPSPSAASAAP 60

Query: 61  LAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASF 120
           +  D   VE KKP  P +PWLIVGLGNPGKKY  TRHNVGFEM+DA+AE EGI +SS SF
Sbjct: 61  VRSDTAPVETKKP--PKQPWLIVGLGNPGKKYNSTRHNVGFEMVDAIAEAEGIPLSSVSF 119

Query: 121 KALIGKGV 129
           KAL+GKG+
Sbjct: 121 KALVGKGL 119

[Close]

BLAST of CmaCh18G000290 vs. NCBI nr
Match: gi|658001655|ref|XP_008393294.1| (PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Malus domestica])

HSP 1 Score: 131.7 bits (330), Expect = 9.9e-28
Identity = 73/128 (57.03%), Postives = 91/128 (71.09%), Query Frame = 1


Query: 1   MNIAASLSSLAALRLPICLHCFPTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MN+AASLSS+A +R P C  CF  F  P+      L  PSL I S ++SS + S  +++P
Sbjct: 1   MNVAASLSSIATVRFPNCHRCF-RFSKPL------LRSPSLQIMSRISSSPSPSTVSAAP 60

Query: 61  LAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASF 120
           ++ D   VE KKP  P +PWLIVGLGNPGKKY  TRHNVGFEM+DA+AE EGI +SS SF
Sbjct: 61  VSSDTAPVEAKKP--PKQPWLIVGLGNPGKKYNSTRHNVGFEMVDAIAEAEGIPLSSVSF 119

Query: 121 KALIGKGV 129
           KAL+GKG+
Sbjct: 121 KALVGKGL 119

[Close]

BLAST of CmaCh18G000290 vs. NCBI nr
Match: gi|595848231|ref|XP_007209484.1| (hypothetical protein PRUPE_ppa010131mg [Prunus persica])

HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27
Identity = 75/128 (58.59%), Postives = 93/128 (72.66%), Query Frame = 1


Query: 1   MNIAASLSSLAALRLPICLHCFPTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MN+AASLSS+A +R P C  CF + +T I  PS      SL I S  +SS +AS  ++ P
Sbjct: 1   MNVAASLSSIATVRFPNCHRCFRSSKTLI--PS-----SSLRIMSQFSSSPSAS--SAPP 60

Query: 61  LAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASF 120
           ++ +  AVE KKP  P +PWLIVGLGNPGKKY  TRHNVGFEM+DA+AE EGIS+SS SF
Sbjct: 61  MSSNTAAVESKKP--PKQPWLIVGLGNPGKKYHSTRHNVGFEMVDAIAEAEGISLSSVSF 117

Query: 121 KALIGKGV 129
           KAL+GKG+
Sbjct: 121 KALVGKGL 117

The following BLAST results are available for this feature:

BLAST of CmaCh18G000290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PTHC_ARATH	1.4e-18	55.79	Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2...	[more]
PTHM_ORYSJ	2.3e-16	74.00	Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0...	[more]
CRS2B_ARATH	9.0e-13	61.02	Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Ara...	[more]
CRS2L_ORYSJ	2.0e-12	55.93	CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800...	[more]
PTHM_ARATH	2.0e-12	53.33	Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2...	[more]

BLAST of CmaCh18G000290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVQ7_CUCSA	1.2e-43	72.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042230 PE=3 SV=1	[more]
M5WN23_PRUPE	4.5e-27	58.59	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010131mg PE=3 SV=1	[more]
V4KY46_EUTSA	3.7e-21	47.80	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009989mg PE=3 SV=1	[more]
M4EAU6_BRARP	4.0e-20	45.86	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1	[more]
Q5FAM1_BRAOL	5.3e-20	45.22	Putative Putative Pepidyl-tRNA hydrolase family protein OS=Brassica oleracea GN=...	[more]

BLAST of CmaCh18G000290 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G18440.1	8.0e-20	55.79	Peptidyl-tRNA hydrolase family protein	[more]
AT5G16140.1	5.1e-14	61.02	Peptidyl-tRNA hydrolase family protein	[more]
AT5G19830.1	1.1e-13	53.33	Peptidyl-tRNA hydrolase family protein	[more]
AT5G38290.2	8.1e-12	40.91	Peptidyl-tRNA hydrolase family protein	[more]

BLAST of CmaCh18G000290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439389\|ref\|XP_004137468.1\|	1.7e-43	72.46	PREDICTED: peptidyl-tRNA hydrolase, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|659066706\|ref\|XP_008457243.1\|	1.4e-42	72.46	PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo]	[more]
gi\|694317176\|ref\|XP_009337161.1\|	2.6e-28	57.03	PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Pyrus x bretschneideri]	[more]
gi\|658001655\|ref\|XP_008393294.1\|	9.9e-28	57.03	PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Malus domestica]	[more]
gi\|595848231\|ref\|XP_007209484.1\|	6.4e-27	58.59	hypothetical protein PRUPE_ppa010131mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001328	Pept_tRNA_hydro
IPR018171	Pept_tRNA_hydro_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0004045	aminoacyl-tRNA hydrolase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004045	aminoacyl-tRNA hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G000290.1	CmaCh18G000290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001328	Peptidyl-tRNA hydrolase	GENE3D	G3DSA:3.40.50.1470		coord: 77..128 score: 9.4
IPR001328	Peptidyl-tRNA hydrolase	PANTHER	PTHR17224	PEPTIDYL-TRNA HYDROLASE	coord: 40..137 score: 2.5
IPR001328	Peptidyl-tRNA hydrolase	PFAM	PF01195	Pept_tRNA_hydro	coord: 81..128 score: 3.8
IPR001328	Peptidyl-tRNA hydrolase	unknown	SSF53178	Peptidyl-tRNA hydrolase-like	coord: 79..128 score: 2.22
IPR018171	Peptidyl-tRNA hydrolase, conserved site	PROSITE	PS01195	PEPT_TRNA_HYDROL_1	coord: 92..105 scor
None	No IPR available	PANTHER	PTHR17224:SF5	SUBFAMILY NOT NAMED	coord: 40..137 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G000290	Melon (DHL92) v3.6.1	cmamedB424
CmaCh18G000290	Melon (DHL92) v3.6.1	cmamedB429
CmaCh18G000290	Silver-seed gourd	carcmaB0541
CmaCh18G000290	Silver-seed gourd	carcmaB0543
CmaCh18G000290	Silver-seed gourd	carcmaB0722
CmaCh18G000290	Silver-seed gourd	carcmaB0834
CmaCh18G000290	Cucumber (Chinese Long) v3	cmacucB0464
CmaCh18G000290	Cucumber (Chinese Long) v3	cmacucB0466
CmaCh18G000290	Watermelon (97103) v2	cmawmbB420
CmaCh18G000290	Watermelon (97103) v2	cmawmbB422
CmaCh18G000290	Watermelon (97103) v2	cmawmbB432
CmaCh18G000290	Wax gourd	cmawgoB0520
CmaCh18G000290	Cucurbita maxima (Rimu)	cmacmaB100
CmaCh18G000290	Cucurbita maxima (Rimu)	cmacmaB139
CmaCh18G000290	Cucurbita maxima (Rimu)	cmacmaB217
CmaCh18G000290	Wild cucumber (PI 183967)	cmacpiB394
CmaCh18G000290	Cucumber (Gy14) v1	cgycmaB0268
CmaCh18G000290	Cucumber (Gy14) v1	cgycmaB0587
CmaCh18G000290	Cucurbita moschata (Rifu)	cmacmoB399
CmaCh18G000290	Cucurbita moschata (Rifu)	cmacmoB389
CmaCh18G000290	Cucurbita moschata (Rifu)	cmacmoB408
CmaCh18G000290	Wild cucumber (PI 183967)	cmacpiB397
CmaCh18G000290	Cucumber (Chinese Long) v2	cmacuB390
CmaCh18G000290	Cucumber (Chinese Long) v2	cmacuB393
CmaCh18G000290	Melon (DHL92) v3.5.1	cmameB362
CmaCh18G000290	Melon (DHL92) v3.5.1	cmameB365
CmaCh18G000290	Melon (DHL92) v3.5.1	cmameB372
CmaCh18G000290	Watermelon (Charleston Gray)	cmawcgB361
CmaCh18G000290	Watermelon (Charleston Gray)	cmawcgB363
CmaCh18G000290	Watermelon (Charleston Gray)	cmawcgB371
CmaCh18G000290	Watermelon (97103) v1	cmawmB396
CmaCh18G000290	Watermelon (97103) v1	cmawmB394
CmaCh18G000290	Watermelon (97103) v1	cmawmB404
CmaCh18G000290	Cucurbita pepo (Zucchini)	cmacpeB416
CmaCh18G000290	Cucurbita pepo (Zucchini)	cmacpeB439
CmaCh18G000290	Cucurbita pepo (Zucchini)	cmacpeB452
CmaCh18G000290	Bottle gourd (USVL1VR-Ls)	cmalsiB370
CmaCh18G000290	Bottle gourd (USVL1VR-Ls)	cmalsiB391
CmaCh18G000290	Melon (DHL92) v3.6.1	cmamedB420
CmaCh18G000290	Cucumber (Gy14) v2	cgybcmaB085
CmaCh18G000290	Cucumber (Gy14) v2	cgybcmaB088