CmaCh17G013630 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G013630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pre-rRNA-processing protein TSR1-like protein
Location	Cma_Chr17 : 9123377 .. 9125354 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAAACCCTGAACCCTCTCCTAGTCTATTTTTTCACGTTGTGTGCTCCTCTCCAGCAGTTAGTGTCGCCACCTTTCTCCGGTTCAGTGGCGCCACCGCCGCCGTTGTCTTTCTTCCGCTTGTGCCGCTGCAGCCTCTCTCTGAGCGGCTTTGTACAGGTTTTCGACTTTCTTGTTCTTACTGGTATTCTTCCAATCGTTATCTATGTCTTTCTCGGCACTTGAGAAACATAAATCAGGACTTGTCTAATGAATGAATGAATGGATGAATTTTTGTTTTTGTTTTTTTAGAATATCAATCACAGAATAGAAACCATAAAAAAAAAATAATAATAAAATAAATAAATAAAACAGCATTGTGCTAATTGGTACTATTCGAGCTGCGTTTTGATTTGTTGCATATGTCTGTCAATTGAGAGTTTGATCATCGGTATATCTCTTTAGTTTATTAGAGAATCAGTCGAAGTAATCTGTCACTAATTGCACTTTGAATTTATTGAAACTAATAGTCATATATATGCTTTGTGATTCATGTATTCGATCTTGAAAGTTTTAGAAATTTTATGGTTTAAATAATCATATCTTAAAAGGCAGAGGGATTAGAGAGGACCTAAATATTCTCCTTGCAATTCTTACAGTTTCCATGGGAGGTAATAGGGCTCAAGTCAATAAGCCCCATAAATCACGCTTCTCATCCAAGGCAACGCGACAACAGCACAAAACCTCTTTAACAGGTGTGGATCTTCTTTTCTTTTAGTTCATGAAAGCCTAGTTTTTGTATTTTTCGTTTTAAGATAATTTTTGGTTCATGTAGAACCTCAAGGTTTAATTTTCTCTATAACTAATACTTAGGGTTGTGTAGCTATTGGGTTCTAATTTGAGTTTTGGGTCACTAGATAGAGGCAAAGTAACAAAGAATAATGTTGCTAAGGGAGCTCGGGCTGCTCGTCTTCAGCGTAGCAAGATGGTACTTGTCGTCCAATCTTCTTCTACCCAGTCTTCCTTTTCCTTGGGCATATTTGACATGCCTCATTGTCATTGGTGGTTTTTTATTTTCATTACTGAATTTGTTGTTGCAGATTCGAGAGCAGAAAAGGGCGGCTGTTTTACAGGAGAAAAGAGCATTAAGTGGATCAAAGAGTCCTCCCAGAGTCATAGTGAGTTATTAGAATATCCATGGAATTTCATATCTGCCTTTATTTCTTATTTACTCATTCCCTGCTCCGATCAATTTTCTTGTAATATGTGTTAATGTTTACTGATTACGCTGCCCACAGGTTCTTTTAGGACTCTCTGCATCAGTAGACCTGAATCCACTGGCTGAGGATCTCTCGTCTCTATTAACTCCTGGAGCTTCGTCATCCACAGTTGCTTCTTCAGAATACAAGCTTCGGGCAACAGTAAGATCTATGCGATTCTTCTTCATGTTTTTTCTTTAATTTTTGAAGCCGTGGCCAAATTACTCTATTTTATTTATGTTTCTTATTCAAACTTCTCTATTTTATTGAGTTGTCCTGAACCCTCGGCAATTTTTTGTGTACCAATCCTTATGTTTGCTTTCATTGTGCTAAATTTTTATTCTCCAGGTACTGAAAGCACCCTATAGTGACTTGCATTCATGTATAGAGATGGCCAAGGTTTTAACTTCTCATGCAATTGTTTTTTTTTTTTTTCTTCGCTCATCAAGTTTTAAGTTTTGATCATGTACCTCTTAATTTGTAGGTAGCTGACCTAATTGCTTTTGTGGTCTCTGCGAGCTACTATATTGAAAGAAGCACAACTCTCTACATTGATTCATTTGGAAGCGAATGCCTTTCTGTATTAAGATCTCTGGGCTTACGTGAGTACGGCAGTGCTTATTCGAGTATGTTATCATGTTATTTCATTTTTGAGACTTATAATCCTAAAGGAGAAGAATTATCTGCATGTATAGGTAAAGCTCTTTTCCTTTTCTGGCAGGACCTACCCCACTGATATAA

mRNA sequence

CATAAACCCTGAACCCTCTCCTAGTCTATTTTTTCACGTTGTGTGCTCCTCTCCAGCAGTTAGTGTCGCCACCTTTCTCCGGTTCAGTGGCGCCACCGCCGCCGTTGTCTTTCTTCCGCTTGTGCCGCTGCAGCCTCTCTCTGAGCGGCTTTGTACAGGTTTTCGACTTTCTTGTTCTTACTGTTTCCATGGGAGGTAATAGGGCTCAAGTCAATAAGCCCCATAAATCACGCTTCTCATCCAAGGCAACGCGACAACAGCACAAAACCTCTTTAACAGATAGAGGCAAAGTAACAAAGAATAATGTTGCTAAGGGAGCTCGGGCTGCTCGTCTTCAGCGTAGCAAGATGATTCGAGAGCAGAAAAGGGCGGCTGTTTTACAGGAGAAAAGAGCATTAAGTGGATCAAAGAGTCCTCCCAGAGTCATAGTTCTTTTAGGACTCTCTGCATCAGTAGACCTGAATCCACTGGCTGAGGATCTCTCGTCTCTATTAACTCCTGGAGCTTCGTCATCCACAGTTGCTTCTTCAGAATACAAGCTTCGGGCAACAGTACTGAAAGCACCCTATAGTGACTTGCATTCATGTATAGAGATGGCCAAGGTAGCTGACCTAATTGCTTTTGTGGTCTCTGCGAGCTACTATATTGAAAGAAGCACAACTCTCTACATTGATTCATTTGGAAGCGAATGCCTTTCTGTATTAAGATCTCTGGGCTTACGTGAGTACGGCAGTGCTTATTCGAGACCTACCCCACTGATATAA

Coding sequence (CDS)

ATGGGAGGTAATAGGGCTCAAGTCAATAAGCCCCATAAATCACGCTTCTCATCCAAGGCAACGCGACAACAGCACAAAACCTCTTTAACAGATAGAGGCAAAGTAACAAAGAATAATGTTGCTAAGGGAGCTCGGGCTGCTCGTCTTCAGCGTAGCAAGATGATTCGAGAGCAGAAAAGGGCGGCTGTTTTACAGGAGAAAAGAGCATTAAGTGGATCAAAGAGTCCTCCCAGAGTCATAGTTCTTTTAGGACTCTCTGCATCAGTAGACCTGAATCCACTGGCTGAGGATCTCTCGTCTCTATTAACTCCTGGAGCTTCGTCATCCACAGTTGCTTCTTCAGAATACAAGCTTCGGGCAACAGTACTGAAAGCACCCTATAGTGACTTGCATTCATGTATAGAGATGGCCAAGGTAGCTGACCTAATTGCTTTTGTGGTCTCTGCGAGCTACTATATTGAAAGAAGCACAACTCTCTACATTGATTCATTTGGAAGCGAATGCCTTTCTGTATTAAGATCTCTGGGCTTACGTGAGTACGGCAGTGCTTATTCGAGACCTACCCCACTGATATAA

Protein sequence

MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGLREYGSAYSRPTPLI

Homology

[Close]

BLAST of CmaCh17G013630 vs. TrEMBL
Match: A0A0A0KDA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087900 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.0e-76
Identity = 162/177 (91.53%), Postives = 166/177 (93.79%), Query Frame = 1


Query: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGGNRAQVNKPHKSRFSSKATRQQHKTSL D+ KVTKNNVAKGARAARLQRSKMIREQKR
Sbjct: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLKDKSKVTKNNVAKGARAARLQRSKMIREQKR 60

Query: 61  AAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTPGASSSTVASSEYKLRA 120
           AAVLQ+KR LSGSKSPPRVIVL  LSASVDLNPLAEDL SLL PGASSSTVASSEYKLRA
Sbjct: 61  AAVLQDKRTLSGSKSPPRVIVLFRLSASVDLNPLAEDLLSLLAPGASSSTVASSEYKLRA 120

Query: 121 TVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL 178
           TVLKAPY DL SC+EMAKVADLIAFV SASYYIE ST+LYIDSFGSECLSVLRSLGL
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGL 177

[Close]

BLAST of CmaCh17G013630 vs. TrEMBL
Match: W9QWW7_9ROSA (Pre-rRNA-processing protein TSR1-like protein OS=Morus notabilis GN=L484_024871 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.1e-55
Identity = 129/182 (70.88%), Postives = 150/182 (82.42%), Query Frame = 1


Query: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKN--NVAKGARAARLQRSKMIREQ 60
           MGG+R QVNK HK+RFSSKA+R  HKTSL D+ ++ K+  NV KGA+AAR+QR+KM+R+Q
Sbjct: 1   MGGSRTQVNKAHKTRFSSKASRHLHKTSLQDKSRIAKSERNVGKGAKAARIQRNKMLRDQ 60

Query: 61  KRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTP---GASSSTVASSE 120
           KRAAVL+EKRA  GS S PRVIVL GLSA+VDLN LA D+ +LL+    G SSSTVASSE
Sbjct: 61  KRAAVLKEKRASGGSTSSPRVIVLFGLSAAVDLNSLARDILALLSSEGSGVSSSTVASSE 120

Query: 121 YKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSL 178
           YKLRATVLKAP+ DL SCIEMAKVADLIAFV SASY  E S + YIDSFGS+CLSV RS+
Sbjct: 121 YKLRATVLKAPHGDLQSCIEMAKVADLIAFVASASYTCEGSISDYIDSFGSQCLSVFRSI 180

[Close]

BLAST of CmaCh17G013630 vs. TrEMBL
Match: B9R8L9_RICCO (Ribosome biogenesis protein tsr1, putative OS=Ricinus communis GN=RCOM_1600880 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.5e-54
Identity = 130/182 (71.43%), Postives = 150/182 (82.42%), Query Frame = 1


Query: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKN--NVAKGARAARLQRSKMIREQ 60
           MGG+RAQVNK HKSRFSSK+TR  HKTSL D+ ++ K+  N AKGARA R+QR+KM+REQ
Sbjct: 1   MGGSRAQVNKAHKSRFSSKSTRNLHKTSLRDKNRIAKSERNAAKGARAVRIQRNKMLREQ 60

Query: 61  KRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTP---GASSSTVASSE 120
           KRAA+L+EKRA  GS SPPRVIVL GLSASV+++ LAEDL  LL+P    A SSTVASSE
Sbjct: 61  KRAALLKEKRASGGSSSPPRVIVLFGLSASVNIDSLAEDLLQLLSPEGGAAVSSTVASSE 120

Query: 121 YKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSL 178
           YK+RATVLKAP+ DL SC+EMAKVADLIAFV SAS   E S + YIDSFGS+CLSV RSL
Sbjct: 121 YKMRATVLKAPHGDLLSCMEMAKVADLIAFVASAS---EESASDYIDSFGSQCLSVFRSL 179

[Close]

BLAST of CmaCh17G013630 vs. TrEMBL
Match: M5WCS2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001600mg PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.4e-53
Identity = 128/180 (71.11%), Postives = 147/180 (81.67%), Query Frame = 1


Query: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGG+RAQVNKPHK+RF+SK++R  HKTS   R   +++NVAKGARAAR+QR+KM+REQKR
Sbjct: 1   MGGSRAQVNKPHKTRFASKSSRNLHKTSDKSRIGKSEHNVAKGARAARVQRNKMLREQKR 60

Query: 61  AAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTP---GASSSTVASSEYK 120
           AA+L+EKRA SGS S PRVIVL GLSA V+LN LAEDL SLL+P    A+  TVAS EYK
Sbjct: 61  AALLKEKRASSGSASAPRVIVLFGLSADVNLNSLAEDLLSLLSPQGYDATLPTVASVEYK 120

Query: 121 LRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL 178
           LR TVLKAP+ DL SC+EMAKVADLIAFV SAS   E ST+ YIDSFGS CLSV RSLGL
Sbjct: 121 LRTTVLKAPHGDLLSCLEMAKVADLIAFVASASSSCEGSTSDYIDSFGSHCLSVFRSLGL 180

[Close]

BLAST of CmaCh17G013630 vs. TrEMBL
Match: A0A067KX18_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08096 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.4e-52
Identity = 123/180 (68.33%), Postives = 149/180 (82.78%), Query Frame = 1


Query: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKN--NVAKGARAARLQRSKMIREQ 60
           MGG+R Q+NK HKSRF+SK++R  H+TSL D+ ++ K+  NV KGARAAR+QR+KM+REQ
Sbjct: 1   MGGSRVQINKSHKSRFASKSSRNLHRTSLKDKSRIAKSEHNVTKGARAARIQRNKMLREQ 60

Query: 61  KRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTP-GASSSTVASSEYK 120
           KRAA+L+EKRA +GS SPPR+IVL GLSA V+L+ LAEDL  LL+P G  SSTVASSEYK
Sbjct: 61  KRAALLKEKRASNGSSSPPRIIVLFGLSACVNLDSLAEDLLKLLSPNGTGSSTVASSEYK 120

Query: 121 LRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL 178
           +RATVLKAP+ DL SC+EMAKVADLIAFV SA+   E S + YIDSFGS CLSV RS+GL
Sbjct: 121 IRATVLKAPHGDLLSCMEMAKVADLIAFVASAN---EESDSDYIDSFGSLCLSVFRSIGL 177

[Close]

BLAST of CmaCh17G013630 vs. TAIR10
Match: AT1G42440.1 (AT1G42440.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 198.0 bits (502), Expect = 5.4e-51
Identity = 117/182 (64.29%), Postives = 144/182 (79.12%), Query Frame = 1


Query: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKN--NVAKGARAARLQRSKMIREQ 60
           MG +R QVNK HK+RFSSK++R  H+T+L D G++ K+  N  KGA+AAR+QR KM+REQ
Sbjct: 1   MGRSRVQVNKAHKTRFSSKSSRNLHRTNLQDSGRIGKSDSNYVKGAKAARVQRGKMLREQ 60

Query: 61  KRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTP---GASSSTVASSE 120
           KRAAVL+EKRA  G  S PRVIVL  LSASV+LN L ED+  LL+    G +SSTVASSE
Sbjct: 61  KRAAVLKEKRASGGINSAPRVIVLFPLSASVELNSLGEDVLKLLSSDGSGIASSTVASSE 120

Query: 121 YKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSL 178
           YKLRATVLKAP+ DL +C+EMAKVADL+AFV SAS   E +++ +IDSFGS+CLSV RS+
Sbjct: 121 YKLRATVLKAPHGDLLTCMEMAKVADLMAFVASASAPWEENSSNFIDSFGSQCLSVFRSI 180

[Close]

BLAST of CmaCh17G013630 vs. NCBI nr
Match: gi|659120047|ref|XP_008459984.1| (PREDICTED: pre-rRNA-processing protein TSR1 homolog [Cucumis melo])

HSP 1 Score: 293.1 bits (749), Expect = 3.5e-76
Identity = 163/177 (92.09%), Postives = 167/177 (94.35%), Query Frame = 1


Query: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGGNRAQVNKPHKSRFS+KATRQQHKTSL DR KVTKNNVAKGARAARLQRSKMIREQKR
Sbjct: 1   MGGNRAQVNKPHKSRFSTKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60

Query: 61  AAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTPGASSSTVASSEYKLRA 120
           AAVLQ+KRALSGSKSPPRVIVL  LSASVDLNPLAEDL SLL PGASSSTVASSEYKLRA
Sbjct: 61  AAVLQDKRALSGSKSPPRVIVLFRLSASVDLNPLAEDLLSLLAPGASSSTVASSEYKLRA 120

Query: 121 TVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL 178
           TVLKAPY DL SC+EMAKVADLIAFV SASYYIE ST+LYIDSFGSECLSVLRSLGL
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGL 177

[Close]

BLAST of CmaCh17G013630 vs. NCBI nr
Match: gi|778711552|ref|XP_011656753.1| (PREDICTED: pre-rRNA-processing protein TSR1 homolog [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 1.0e-75
Identity = 162/177 (91.53%), Postives = 166/177 (93.79%), Query Frame = 1


Query: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGGNRAQVNKPHKSRFSSKATRQQHKTSL D+ KVTKNNVAKGARAARLQRSKMIREQKR
Sbjct: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLKDKSKVTKNNVAKGARAARLQRSKMIREQKR 60

Query: 61  AAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTPGASSSTVASSEYKLRA 120
           AAVLQ+KR LSGSKSPPRVIVL  LSASVDLNPLAEDL SLL PGASSSTVASSEYKLRA
Sbjct: 61  AAVLQDKRTLSGSKSPPRVIVLFRLSASVDLNPLAEDLLSLLAPGASSSTVASSEYKLRA 120

Query: 121 TVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL 178
           TVLKAPY DL SC+EMAKVADLIAFV SASYYIE ST+LYIDSFGSECLSVLRSLGL
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGL 177

[Close]

BLAST of CmaCh17G013630 vs. NCBI nr
Match: gi|703092241|ref|XP_010094575.1| (Pre-rRNA-processing protein TSR1-like protein [Morus notabilis])

HSP 1 Score: 223.0 bits (567), Expect = 4.4e-55
Identity = 129/182 (70.88%), Postives = 150/182 (82.42%), Query Frame = 1


Query: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKN--NVAKGARAARLQRSKMIREQ 60
           MGG+R QVNK HK+RFSSKA+R  HKTSL D+ ++ K+  NV KGA+AAR+QR+KM+R+Q
Sbjct: 1   MGGSRTQVNKAHKTRFSSKASRHLHKTSLQDKSRIAKSERNVGKGAKAARIQRNKMLRDQ 60

Query: 61  KRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTP---GASSSTVASSE 120
           KRAAVL+EKRA  GS S PRVIVL GLSA+VDLN LA D+ +LL+    G SSSTVASSE
Sbjct: 61  KRAAVLKEKRASGGSTSSPRVIVLFGLSAAVDLNSLARDILALLSSEGSGVSSSTVASSE 120

Query: 121 YKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSL 178
           YKLRATVLKAP+ DL SCIEMAKVADLIAFV SASY  E S + YIDSFGS+CLSV RS+
Sbjct: 121 YKLRATVLKAPHGDLQSCIEMAKVADLIAFVASASYTCEGSISDYIDSFGSQCLSVFRSI 180

[Close]

BLAST of CmaCh17G013630 vs. NCBI nr
Match: gi|255539194|ref|XP_002510662.1| (PREDICTED: pre-rRNA-processing protein TSR1 homolog [Ricinus communis])

HSP 1 Score: 220.7 bits (561), Expect = 2.2e-54
Identity = 130/182 (71.43%), Postives = 150/182 (82.42%), Query Frame = 1


Query: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKN--NVAKGARAARLQRSKMIREQ 60
           MGG+RAQVNK HKSRFSSK+TR  HKTSL D+ ++ K+  N AKGARA R+QR+KM+REQ
Sbjct: 1   MGGSRAQVNKAHKSRFSSKSTRNLHKTSLRDKNRIAKSERNAAKGARAVRIQRNKMLREQ 60

Query: 61  KRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTP---GASSSTVASSE 120
           KRAA+L+EKRA  GS SPPRVIVL GLSASV+++ LAEDL  LL+P    A SSTVASSE
Sbjct: 61  KRAALLKEKRASGGSSSPPRVIVLFGLSASVNIDSLAEDLLQLLSPEGGAAVSSTVASSE 120

Query: 121 YKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSL 178
           YK+RATVLKAP+ DL SC+EMAKVADLIAFV SAS   E S + YIDSFGS+CLSV RSL
Sbjct: 121 YKMRATVLKAPHGDLLSCMEMAKVADLIAFVASAS---EESASDYIDSFGSQCLSVFRSL 179

[Close]

BLAST of CmaCh17G013630 vs. NCBI nr
Match: gi|595852682|ref|XP_007210358.1| (hypothetical protein PRUPE_ppa001600mg [Prunus persica])

HSP 1 Score: 214.9 bits (546), Expect = 1.2e-52
Identity = 128/180 (71.11%), Postives = 147/180 (81.67%), Query Frame = 1


Query: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGG+RAQVNKPHK+RF+SK++R  HKTS   R   +++NVAKGARAAR+QR+KM+REQKR
Sbjct: 1   MGGSRAQVNKPHKTRFASKSSRNLHKTSDKSRIGKSEHNVAKGARAARVQRNKMLREQKR 60

Query: 61  AAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTP---GASSSTVASSEYK 120
           AA+L+EKRA SGS S PRVIVL GLSA V+LN LAEDL SLL+P    A+  TVAS EYK
Sbjct: 61  AALLKEKRASSGSASAPRVIVLFGLSADVNLNSLAEDLLSLLSPQGYDATLPTVASVEYK 120

Query: 121 LRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL 178
           LR TVLKAP+ DL SC+EMAKVADLIAFV SAS   E ST+ YIDSFGS CLSV RSLGL
Sbjct: 121 LRTTVLKAPHGDLLSCLEMAKVADLIAFVASASSSCEGSTSDYIDSFGSHCLSVFRSLGL 180

The following BLAST results are available for this feature:

BLAST of CmaCh17G013630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G013630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDA2_CUCSA	7.0e-76	91.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087900 PE=4 SV=1	[more]
W9QWW7_9ROSA	3.1e-55	70.88	Pre-rRNA-processing protein TSR1-like protein OS=Morus notabilis GN=L484_024871 ...	[more]
B9R8L9_RICCO	1.5e-54	71.43	Ribosome biogenesis protein tsr1, putative OS=Ricinus communis GN=RCOM_1600880 P...	[more]
M5WCS2_PRUPE	8.4e-53	71.11	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001600mg PE=4 SV=1	[more]
A0A067KX18_JATCU	2.4e-52	68.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08096 PE=4 SV=1	[more]

BLAST of CmaCh17G013630 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G42440.1	5.4e-51	64.29	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmaCh17G013630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120047\|ref\|XP_008459984.1\|	3.5e-76	92.09	PREDICTED: pre-rRNA-processing protein TSR1 homolog [Cucumis melo]	[more]
gi\|778711552\|ref\|XP_011656753.1\|	1.0e-75	91.53	PREDICTED: pre-rRNA-processing protein TSR1 homolog [Cucumis sativus]	[more]
gi\|703092241\|ref\|XP_010094575.1\|	4.4e-55	70.88	Pre-rRNA-processing protein TSR1-like protein [Morus notabilis]	[more]
gi\|255539194\|ref\|XP_002510662.1\|	2.2e-54	71.43	PREDICTED: pre-rRNA-processing protein TSR1 homolog [Ricinus communis]	[more]
gi\|595852682\|ref\|XP_007210358.1\|	1.2e-52	71.11	hypothetical protein PRUPE_ppa001600mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009165	nucleotide biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G013630.1	CmaCh17G013630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12858	RIBOSOME BIOGENESIS PROTEIN	coord: 1..177 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G013630	Silver-seed gourd	carcmaB0020
CmaCh17G013630	Silver-seed gourd	carcmaB0111
CmaCh17G013630	Cucumber (Chinese Long) v3	cmacucB0429
CmaCh17G013630	Cucumber (Chinese Long) v3	cmacucB0439
CmaCh17G013630	Watermelon (97103) v2	cmawmbB369
CmaCh17G013630	Wax gourd	cmawgoB0456
CmaCh17G013630	Cucurbita maxima (Rimu)	cmacmaB384
CmaCh17G013630	Cucumber (Gy14) v1	cgycmaB0951
CmaCh17G013630	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G013630	Cucurbita moschata (Rifu)	cmacmoB376
CmaCh17G013630	Wild cucumber (PI 183967)	cmacpiB371
CmaCh17G013630	Cucumber (Chinese Long) v2	cmacuB367
CmaCh17G013630	Melon (DHL92) v3.5.1	cmameB315
CmaCh17G013630	Watermelon (Charleston Gray)	cmawcgB322
CmaCh17G013630	Watermelon (97103) v1	cmawmB352
CmaCh17G013630	Cucurbita pepo (Zucchini)	cmacpeB389
CmaCh17G013630	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G013630	Bottle gourd (USVL1VR-Ls)	cmalsiB333
CmaCh17G013630	Cucumber (Gy14) v2	cgybcmaB751
CmaCh17G013630	Melon (DHL92) v3.6.1	cmamedB367