CmaCh17G012510 (gene) Cucurbita maxima (Rimu)

NameCmaCh17G012510
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCLAVATA3/ESR-RELATED 44
LocationCma_Chr17 : 8545054 .. 8545838 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGGCTTTATGGGGATAACTCACTCAAAGCGTATTTATACCCGACACATCTTATTAGCTATACGCATCACTCTTCTCAAAAGACTTAAACATATTAGTCTTGTTTGTATTTTATGAGTACTCTCATGTTCACTGTTTCAGTGATTCTAGCTAGTTTTGTGATAGCTCGAGCGGTAGGTATTGTTTCACTCGTTCAACTCGTTCAACTCCAATAGCTGATGACGTAAACAAACATTTACTAAAAACAAACATGTTCTAAGCCTTGCCCTAAATATTTATATGTTTTGGTGATGAAAAAAACATAGGTATTGTGAAGGACATTATTGTCTTTTCACTCAACCCCATTAAAGCTTCTTCCTTGTTGTTGTTGTTCTTCTTTTGTTGAAGCTTCTTCACCCTCTTCTCTCTCCTTGGCTTCTCTGTCTTCCTTCATAGGAATTGTTGCTGGTTAATGGATATTGAACCCTTGTGGGGTGTTGGGGGGTGGTTTCTTGTCTTAAATTGTATGGCAACTGCTACACCAAACCAATCTTCATCTTCATCATCTCACTCTCTCTTTTTCCTTCTTTTCTTTTCTTTCCTCCTCCTTCTAACCCTCATTTCCTCTCCTCCTCCTCCTCTTTCGCCTCGTTCCATGGCGGCTGACACCCACCGCCGTCTCTCTGCCGCCACCGCCTTCCATCCGAAGAAATCTCGACCTCGATCCTCTCGTGCCACAGCCGGAGAGTTCGGAGCCGAAGCCCATGAAGTCCCCAGTGGTCCAAACCCTATATCCAACTAA

mRNA sequence

ATGCAAGGGCTTTATGGGGATAACTCACTCAAAGCCTTCTTCACCCTCTTCTCTCTCCTTGGCTTCTCTGTCTTCCTTCATAGGAATTGTTGCTGGTTAATGGATATTGAACCCTTGTGGGGTGTTGGGGGGTGGTTTCTTGTCTTAAATTGTATGGCAACTGCTACACCAAACCAATCTTCATCTTCATCATCTCACTCTCTCTTTTTCCTTCTTTTCTTTTCTTTCCTCCTCCTTCTAACCCTCATTTCCTCTCCTCCTCCTCCTCTTTCGCCTCGTTCCATGGCGGCTGACACCCACCGCCGTCTCTCTGCCGCCACCGCCTTCCATCCGAAGAAATCTCGACCTCGATCCTCTCGTGCCACAGCCGGAGAGTTCGGAGCCGAAGCCCATGAAGTCCCCAGTGGTCCAAACCCTATATCCAACTAA

Coding sequence (CDS)

ATGCAAGGGCTTTATGGGGATAACTCACTCAAAGCCTTCTTCACCCTCTTCTCTCTCCTTGGCTTCTCTGTCTTCCTTCATAGGAATTGTTGCTGGTTAATGGATATTGAACCCTTGTGGGGTGTTGGGGGGTGGTTTCTTGTCTTAAATTGTATGGCAACTGCTACACCAAACCAATCTTCATCTTCATCATCTCACTCTCTCTTTTTCCTTCTTTTCTTTTCTTTCCTCCTCCTTCTAACCCTCATTTCCTCTCCTCCTCCTCCTCTTTCGCCTCGTTCCATGGCGGCTGACACCCACCGCCGTCTCTCTGCCGCCACCGCCTTCCATCCGAAGAAATCTCGACCTCGATCCTCTCGTGCCACAGCCGGAGAGTTCGGAGCCGAAGCCCATGAAGTCCCCAGTGGTCCAAACCCTATATCCAACTAA

Protein sequence

MQGLYGDNSLKAFFTLFSLLGFSVFLHRNCCWLMDIEPLWGVGGWFLVLNCMATATPNQSSSSSSHSLFFLLFFSFLLLLTLISSPPPPLSPRSMAADTHRRLSAATAFHPKKSRPRSSRATAGEFGAEAHEVPSGPNPISN
BLAST of CmaCh17G012510 vs. Swiss-Prot
Match: TDIF_ZINVI (CLAVATA3/ESR (CLE)-related protein TDIF OS=Zinnia violacea GN=TDIF PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 48/134 (35.82%), Postives = 62/134 (46.27%), Query Frame = 1

Query: 34  MDIEPLWGVGGWFLVL------NCMATATPNQSSSSSSH--------SLFFLLFFSFLLL 93
           MDI+ LW  GGWF +L       CMA     +S+S  SH        SLFF+      +L
Sbjct: 1   MDIDLLWSFGGWFFILFPETINYCMAKL---RSTSQISHFTNPRSCSSLFFVALLIITIL 60

Query: 94  LTLISSPP-------PPLSPRSM----AADTHRRLSAATAFHPKKSRPRSSRATAGEFGA 143
           +T++ S         P   P S      + T    +  T  HPK++  +S       F A
Sbjct: 61  ITMLQSSTSMEVTSLPTHQPTSSNSHDESSTSSTATTTTDLHPKRTHHQSHPKPTRSFEA 120

BLAST of CmaCh17G012510 vs. Swiss-Prot
Match: CLE41_ARATH (CLAVATA3/ESR (CLE)-related protein 41 OS=Arabidopsis thaliana GN=CLE41 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06
Identity = 46/101 (45.54%), Postives = 56/101 (55.45%), Query Frame = 1

Query: 52  MATATPNQSSSSSSHSLFFLLFFSFLLLLTLISSPPPPLSPR---SMAADTHRRL----- 111
           MAT+  +Q+++ SSHS   LL F FL LL L SS   P++     SM A   R L     
Sbjct: 1   MATSN-DQTNTKSSHSRTLLLLFIFLSLL-LFSSLTIPMTRHQSTSMVAPFKRVLLESSV 60

Query: 112 --SAATAFHPKKSRPRSSRATAGEFGAEAHEVPSGPNPISN 143
             S+     PK S  RS  +   EFG +AHEVPSGPNPISN
Sbjct: 61  PASSTMDLRPKASTRRSRTSRRREFGNDAHEVPSGPNPISN 99

BLAST of CmaCh17G012510 vs. TrEMBL
Match: M5VZL5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013219mg PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.2e-17
Identity = 66/136 (48.53%), Postives = 80/136 (58.82%), Query Frame = 1

Query: 34  MDIEPLWGVGGWFLVLNCMATATPNQSSSSSSHSL--------------FFLLFFSFLLL 93
           MDIEPLW +GGWFL+ NCMA A P  S SSSS S+                L+FF FLLL
Sbjct: 1   MDIEPLWALGGWFLLPNCMAAA-PKTSPSSSSPSVTEFHTKLNPCLLLFLSLVFFIFLLL 60

Query: 94  LTLISSPPPPLSPRSMAADTHRRL-------SAATAFHPKKSRPRSSRATAG------EF 143
           ++ IS+P    SP SMA+ + R L        + T  HPKK++   + AT+       EF
Sbjct: 61  VSPISNPTTT-SPSSMASSSKRLLLEPSKPAMSTTNLHPKKTQNSRTSATSSTARARREF 120

BLAST of CmaCh17G012510 vs. TrEMBL
Match: A0A0D2PF23_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G225300 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.9e-15
Identity = 62/125 (49.60%), Postives = 75/125 (60.00%), Query Frame = 1

Query: 34  MDIEPLWGVGGWFLV-LNCMATATPNQSSSSS--------SHSLFFLL--FFSFLLLLTL 93
           MDIEPLW +GGWF + ++CMA      SSSSS        SHSL FLL  FF FLLLL  
Sbjct: 1   MDIEPLWDLGGWFFIFIDCMAATPKTPSSSSSIVAETFAKSHSLLFLLTLFFIFLLLLNP 60

Query: 94  ISSPPPPLSPRSMAADTHRRL----SAATAFHPKKSRPR-SSRATAGEFGAEAHEVPSGP 143
             +  P  SP    +   +RL    S+    HPK++R   +S ++  EFGAEAHEVPSGP
Sbjct: 61  KPTNYPMDSPNGTPSIPFKRLLLDASSNMNLHPKQTRTLGTSSSSRREFGAEAHEVPSGP 120

BLAST of CmaCh17G012510 vs. TrEMBL
Match: W9S349_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015208 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.7e-15
Identity = 65/135 (48.15%), Postives = 79/135 (58.52%), Query Frame = 1

Query: 34  MDIEPLWGVGGWFLVLNCMATATPNQSSS----------SSSHSLFFLLFFSFLLLLTL- 93
           MDIE LW +GGWFL+ NCMA    + SSS          S++  L   L F FLLL T  
Sbjct: 1   MDIESLWALGGWFLLQNCMAAPKTSSSSSPSIFENQITKSNTFLLVVALVFIFLLLSTTR 60

Query: 94  --ISSPPPPLSPRSMAA--DTHRRL----SAATA------FHPKKS-RPRSSRATAGEFG 143
             IS+P  P    SMA+  ++ RRL    S +TA       HPKK+ +P SS +T  +FG
Sbjct: 61  TPISNPRDPYYYNSMASTLNSRRRLLMDSSGSTATVSTTNLHPKKAQKPHSSPSTRTKFG 120

BLAST of CmaCh17G012510 vs. TrEMBL
Match: A0A0S3RV03_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G174300 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.7e-15
Identity = 58/120 (48.33%), Postives = 74/120 (61.67%), Query Frame = 1

Query: 34  MDIEPLWGVGGWFLVLNCMA---TATP-NQSSSSSSHSLFFLLFFSFLLLLTLISSPPPP 93
           MDIEPLW +GGWF + NCMA   +++P ++  S S   L FL  F  LLLL  +S  P P
Sbjct: 1   MDIEPLWAIGGWFSLSNCMAEPKSSSPISEPCSKSPSFLHFLTLFFILLLLINLSHQPHP 60

Query: 94  LSPRSMAAD--THRRLSAATAFHP---KKSRPRSSRATAG--EFGAEAHEVPSGPNPISN 143
            +  S+ +   +     + TA HP   +KSR  SS+A +   EFGAEAHEVPSGPNPISN
Sbjct: 61  STMASLESTKASSESTMSTTAMHPQNSQKSRSPSSKAASAKREFGAEAHEVPSGPNPISN 120

BLAST of CmaCh17G012510 vs. TrEMBL
Match: V7B413_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G124100g PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.8e-15
Identity = 55/118 (46.61%), Postives = 64/118 (54.24%), Query Frame = 1

Query: 34  MDIEPLWGVGGWFLVLNCMA---TATPNQSSSSSSHSL--FFLLFFSFLLLLTLISSPPP 93
           MDIEPLWG+GGW  + NCMA   +++P     S S S   F  LFF  LLL+ L   P P
Sbjct: 1   MDIEPLWGIGGWSSLSNCMAEPKSSSPISEPCSKSPSFLHFLTLFFILLLLINLSHQPHP 60

Query: 94  PLSPRSMAADTHRRLSAATAFHPKKSR----PRSSRATAGEFGAEAHEVPSGPNPISN 143
                  +        + TA HP+ S     P S  A   EFGAEAHEVPSGPNPISN
Sbjct: 61  STMASWESTKASESTMSTTAMHPQNSHKSRTPSSKDAARREFGAEAHEVPSGPNPISN 118

BLAST of CmaCh17G012510 vs. TAIR10
Match: AT3G24770.1 (AT3G24770.1 CLAVATA3/ESR-RELATED 41)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 46/101 (45.54%), Postives = 56/101 (55.45%), Query Frame = 1

Query: 52  MATATPNQSSSSSSHSLFFLLFFSFLLLLTLISSPPPPLSPR---SMAADTHRRL----- 111
           MAT+  +Q+++ SSHS   LL F FL LL L SS   P++     SM A   R L     
Sbjct: 1   MATSN-DQTNTKSSHSRTLLLLFIFLSLL-LFSSLTIPMTRHQSTSMVAPFKRVLLESSV 60

Query: 112 --SAATAFHPKKSRPRSSRATAGEFGAEAHEVPSGPNPISN 143
             S+     PK S  RS  +   EFG +AHEVPSGPNPISN
Sbjct: 61  PASSTMDLRPKASTRRSRTSRRREFGNDAHEVPSGPNPISN 99

BLAST of CmaCh17G012510 vs. NCBI nr
Match: gi|595797091|ref|XP_007201234.1| (hypothetical protein PRUPE_ppa013219mg [Prunus persica])

HSP 1 Score: 95.9 bits (237), Expect = 6.0e-17
Identity = 66/136 (48.53%), Postives = 80/136 (58.82%), Query Frame = 1

Query: 34  MDIEPLWGVGGWFLVLNCMATATPNQSSSSSSHSL--------------FFLLFFSFLLL 93
           MDIEPLW +GGWFL+ NCMA A P  S SSSS S+                L+FF FLLL
Sbjct: 1   MDIEPLWALGGWFLLPNCMAAA-PKTSPSSSSPSVTEFHTKLNPCLLLFLSLVFFIFLLL 60

Query: 94  LTLISSPPPPLSPRSMAADTHRRL-------SAATAFHPKKSRPRSSRATAG------EF 143
           ++ IS+P    SP SMA+ + R L        + T  HPKK++   + AT+       EF
Sbjct: 61  VSPISNPTTT-SPSSMASSSKRLLLEPSKPAMSTTNLHPKKTQNSRTSATSSTARARREF 120

BLAST of CmaCh17G012510 vs. NCBI nr
Match: gi|645259722|ref|XP_008235497.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume])

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 63/138 (45.65%), Postives = 79/138 (57.25%), Query Frame = 1

Query: 34  MDIEPLWGVGGWFLVLNCMATATPNQSSSSSSHSL--------------FFLLFFSFLLL 93
           MDIEPLW +GGWFL+ NCMA A P  S SSSS S+                ++FF FLLL
Sbjct: 1   MDIEPLWALGGWFLLPNCMAAA-PKTSPSSSSPSVSEFHTKLNPSLLLFISIVFFIFLLL 60

Query: 94  LTLISSPPPPLSPRSMAADTHRR---------LSAATAFHPKKSRPRSSRATAG------ 143
           ++ IS+P    SP SMA+ +  +           + T  HPKK++   + AT+       
Sbjct: 61  VSPISNPTTT-SPSSMASSSSSKRLLLEPSKPAMSTTNLHPKKTQNSRTSATSSTARARR 120

BLAST of CmaCh17G012510 vs. NCBI nr
Match: gi|823152995|ref|XP_012476332.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 41-like [Gossypium raimondii])

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-15
Identity = 62/125 (49.60%), Postives = 75/125 (60.00%), Query Frame = 1

Query: 34  MDIEPLWGVGGWFLV-LNCMATATPNQSSSSS--------SHSLFFLL--FFSFLLLLTL 93
           MDIEPLW +GGWF + ++CMA      SSSSS        SHSL FLL  FF FLLLL  
Sbjct: 1   MDIEPLWDLGGWFFIFIDCMAATPKTPSSSSSIVAETFAKSHSLLFLLTLFFIFLLLLNP 60

Query: 94  ISSPPPPLSPRSMAADTHRRL----SAATAFHPKKSRPR-SSRATAGEFGAEAHEVPSGP 143
             +  P  SP    +   +RL    S+    HPK++R   +S ++  EFGAEAHEVPSGP
Sbjct: 61  KPTNYPMDSPNGTPSIPFKRLLLDASSNMNLHPKQTRTLGTSSSSRREFGAEAHEVPSGP 120

BLAST of CmaCh17G012510 vs. NCBI nr
Match: gi|763758227|gb|KJB25558.1| (hypothetical protein B456_004G225300 [Gossypium raimondii])

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-15
Identity = 62/125 (49.60%), Postives = 75/125 (60.00%), Query Frame = 1

Query: 34  MDIEPLWGVGGWFLV-LNCMATATPNQSSSSS--------SHSLFFLL--FFSFLLLLTL 93
           MDIEPLW +GGWF + ++CMA      SSSSS        SHSL FLL  FF FLLLL  
Sbjct: 1   MDIEPLWDLGGWFFIFIDCMAATPKTPSSSSSIVAETFAKSHSLLFLLTLFFIFLLLLNP 60

Query: 94  ISSPPPPLSPRSMAADTHRRL----SAATAFHPKKSRPR-SSRATAGEFGAEAHEVPSGP 143
             +  P  SP    +   +RL    S+    HPK++R   +S ++  EFGAEAHEVPSGP
Sbjct: 61  KPTNYPMDSPNGTPSIPFKRLLLDASSNMNLHPKQTRTLGTSSSSRREFGAEAHEVPSGP 120

BLAST of CmaCh17G012510 vs. NCBI nr
Match: gi|965669778|dbj|BAT84385.1| (hypothetical protein VIGAN_04174300 [Vigna angularis var. angularis])

HSP 1 Score: 88.6 bits (218), Expect = 9.7e-15
Identity = 58/120 (48.33%), Postives = 74/120 (61.67%), Query Frame = 1

Query: 34  MDIEPLWGVGGWFLVLNCMA---TATP-NQSSSSSSHSLFFLLFFSFLLLLTLISSPPPP 93
           MDIEPLW +GGWF + NCMA   +++P ++  S S   L FL  F  LLLL  +S  P P
Sbjct: 1   MDIEPLWAIGGWFSLSNCMAEPKSSSPISEPCSKSPSFLHFLTLFFILLLLINLSHQPHP 60

Query: 94  LSPRSMAAD--THRRLSAATAFHP---KKSRPRSSRATAG--EFGAEAHEVPSGPNPISN 143
            +  S+ +   +     + TA HP   +KSR  SS+A +   EFGAEAHEVPSGPNPISN
Sbjct: 61  STMASLESTKASSESTMSTTAMHPQNSQKSRSPSSKAASAKREFGAEAHEVPSGPNPISN 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TDIF_ZINVI1.3e-0835.82CLAVATA3/ESR (CLE)-related protein TDIF OS=Zinnia violacea GN=TDIF PE=1 SV=1[more]
CLE41_ARATH2.2e-0645.54CLAVATA3/ESR (CLE)-related protein 41 OS=Arabidopsis thaliana GN=CLE41 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
M5VZL5_PRUPE4.2e-1748.53Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013219mg PE=4 SV=1[more]
A0A0D2PF23_GOSRA3.9e-1549.60Uncharacterized protein OS=Gossypium raimondii GN=B456_004G225300 PE=4 SV=1[more]
W9S349_9ROSA6.7e-1548.15Uncharacterized protein OS=Morus notabilis GN=L484_015208 PE=4 SV=1[more]
A0A0S3RV03_PHAAN6.7e-1548.33Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G174300 PE=... [more]
V7B413_PHAVU8.8e-1546.61Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G124100g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G24770.11.2e-0745.54 CLAVATA3/ESR-RELATED 41[more]
Match NameE-valueIdentityDescription
gi|595797091|ref|XP_007201234.1|6.0e-1748.53hypothetical protein PRUPE_ppa013219mg [Prunus persica][more]
gi|645259722|ref|XP_008235497.1|1.1e-1545.65PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume][more]
gi|823152995|ref|XP_012476332.1|5.7e-1549.60PREDICTED: CLAVATA3/ESR (CLE)-related protein 41-like [Gossypium raimondii][more]
gi|763758227|gb|KJB25558.1|5.7e-1549.60hypothetical protein B456_004G225300 [Gossypium raimondii][more]
gi|965669778|dbj|BAT84385.1|9.7e-1548.33hypothetical protein VIGAN_04174300 [Vigna angularis var. angularis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G012510.1CmaCh17G012510.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35301FAMILY NOT NAMEDcoord: 35..142
score: 3.6
NoneNo IPR availablePANTHERPTHR35301:SF1CLAVATA3/ESR (CLE)-RELATED PROTEIN 41-RELATEDcoord: 35..142
score: 3.6

The following gene(s) are paralogous to this gene:

None