CmaCh17G012360 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G012360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr17 : 8481903 .. 8482226 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATTGCTTATGGCTTTGTTTTTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACCCCACCCGACGCCACCTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTGGCTACTCCGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATTGGCGGTGCAGTCGGATCAGGCGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGCTGGGAGGCACCGGCGGTGGCATTGGAGGCGGAACTGGCAGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGA

mRNA sequence

ATGGCCAAATTGCTTATGGCTTTGTTTTTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACCCCACCCGACGCCACCTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTGGCTACTCCGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATTGGCGGTGCAGTCGGATCAGGCGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGCTGGGAGGCACCGGCGGTGGCATTGGAGGCGGAACTGGCAGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGA

Coding sequence (CDS)

ATGGCCAAATTGCTTATGGCTTTGTTTTTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACCCCACCCGACGCCACCTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTGGCTACTCCGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATTGGCGGTGCAGTCGGATCAGGCGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGCTGGGAGGCACCGGCGGTGGCATTGGAGGCGGAACTGGCAGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGA

Protein sequence

MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAVGSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGTGSGLGGGSGLTNP

Homology

[Close]

BLAST of CmaCh17G012360 vs. TrEMBL
Match: A0A0A0K9U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336450 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.6e-23
Identity = 83/132 (62.88%), Postives = 93/132 (70.45%), Query Frame = 1


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKL MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+GGYSGIG+NGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GS-------GGDLGGGL-------------GGPAGGIGGLGGL-----GGTGGGIGGGTG 108
           G        GG LGGGL             GGP GG GG+GG      GG GGG+GGG G
Sbjct: 61  GGGGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGFGGIGGTTGGLGGGLGGGLGGGLG 120

[Close]

BLAST of CmaCh17G012360 vs. TrEMBL
Match: A0A0A0K6P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336480 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.3e-22
Identity = 79/113 (69.91%), Postives = 87/113 (76.99%), Query Frame = 1


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKL +AL LAL+ATHALARP  P  TF+DQKNFLTYGG+GGYSGIGSNGLPFGG+GG +
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGTGS------GLGGGSGLTNP 108
           G  G   GGLGG  GG  G+GGLGG GGG  GG GS      G+GGGSGLTNP
Sbjct: 61  GGTGP--GGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLTNP 111

[Close]

BLAST of CmaCh17G012360 vs. TrEMBL
Match: V7CWV7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G168900g PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.1e-17
Identity = 72/112 (64.29%), Postives = 82/112 (73.21%), Query Frame = 1


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFG----GI 60
           MAKL + + +  +A    AR  P DA   DQKNFLTYGG+GGYSGIGSNGLPFG    GI
Sbjct: 1   MAKLCVLVLVLALAVATSARNAPTDAGLKDQKNFLTYGGVGGYSGIGSNGLPFGGVGAGI 60

Query: 61  GGAVGSGGDLGGGLGGPAGGIGGLGGLGGT----GGGIGGGTGSGLGGGSGL 105
           GG  G+GG LGGGLGG   GIGGLGGLGGT    GGG+GGG G+G+GGGSG+
Sbjct: 61  GGGFGAGGGLGGGLGGTT-GIGGLGGLGGTGGGVGGGVGGGVGTGIGGGSGV 111

[Close]

BLAST of CmaCh17G012360 vs. TrEMBL
Match: I1JPC2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G170900 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 73/111 (65.77%), Postives = 84/111 (75.68%), Query Frame = 1


Query: 1   MAKL-LMALFLAL-MATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFG---- 60
           MAK+ ++ L LAL +AT A   P P DA   DQKNF++YGG+GGYSGIG+NGLPFG    
Sbjct: 1   MAKMCVLVLVLALAVATSARNVPNPKDAGLKDQKNFISYGGVGGYSGIGNNGLPFGGAGA 60

Query: 61  GIGGAVGSGGDLGGGLGGPAGGIGGLGGLG-GTGGGIGGGTGSGLGGGSGL 105
           GIGG  G GG LGGGLGGP GGIGG GG G G GGGIGGG G+G+GGGSG+
Sbjct: 61  GIGGGFGGGGGLGGGLGGPTGGIGGFGGTGSGVGGGIGGGVGTGVGGGSGV 111

[Close]

BLAST of CmaCh17G012360 vs. TrEMBL
Match: A0A0S3RYE9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G318500 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 65/106 (61.32%), Postives = 74/106 (69.81%), Query Frame = 1


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKL +   +  +A    AR  P DA   DQKNF+TYGG+GGYSGIG+NGLPF G G  +
Sbjct: 1   MAKLCVLFLVLALAVATSARNAPTDAGLKDQKNFITYGGVGGYSGIGNNGLPFAGGGAGI 60

Query: 61  GSGGDLGGGLGGPAG---GIGGLGGLGGTGGGIGGGTGSGLGGGSG 104
           G G D GGGLGG  G   GIGG+GGLGGTGGGIGGG G G+G G G
Sbjct: 61  GGGFDAGGGLGGGLGGTTGIGGIGGLGGTGGGIGGGVGGGVGSGIG 106

[Close]

BLAST of CmaCh17G012360 vs. TAIR10
Match: AT4G29030.1 (AT4G29030.1 Putative membrane lipoprotein)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 60/109 (55.05%), Postives = 68/109 (62.39%), Query Frame = 1


Query: 1   MAKLLMALFLALMATHALA---RPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIG 60
           MAK    +FL      ALA   R  P     +DQKN+L YGG  GYSG+G NGLPFGG+G
Sbjct: 1   MAKWFFTIFLVFALASALACGARNVP--VGLSDQKNYLGYGG--GYSGVGDNGLPFGGVG 60

Query: 61  GAV-GSGGDLG-GGLGGPAGGIGGLGGLGGTGGGIGGGTGSGLGGGSGL 105
           G V G GG+LG GG GG  GG+G     GG GGG G G G GLGGGSG+
Sbjct: 61  GGVSGPGGNLGYGGFGGAGGGLG-----GGLGGGAGSGLGGGLGGGSGI 100

[Close]

BLAST of CmaCh17G012360 vs. NCBI nr
Match: gi|778730344|ref|XP_011659762.1| (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 83/132 (62.88%), Postives = 93/132 (70.45%), Query Frame = 1


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKL MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+GGYSGIG+NGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GS-------GGDLGGGL-------------GGPAGGIGGLGGL-----GGTGGGIGGGTG 108
           G        GG LGGGL             GGP GG GG+GG      GG GGG+GGG G
Sbjct: 61  GGGGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGFGGIGGTTGGLGGGLGGGLGGGLG 120

[Close]

BLAST of CmaCh17G012360 vs. NCBI nr
Match: gi|659124371|ref|XP_008462124.1| (PREDICTED: acanthoscurrin-1-like [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-22
Identity = 80/103 (77.67%), Postives = 86/103 (83.50%), Query Frame = 1


Query: 6   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAVGS--- 65
           MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+GGYSGIGSNGLPFGG+GGA+G    
Sbjct: 1   MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60

Query: 66  GGDLGGGLGGPAGGIGGLGGLGGTGGGIG--GGTGSGLGGGSG 104
           GG LGGGLGG  G  GGLGGLGGTGGG+G  GGT  GLGGG G
Sbjct: 61  GGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLG 103

[Close]

BLAST of CmaCh17G012360 vs. NCBI nr
Match: gi|659124133|ref|XP_008462002.1| (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22
Identity = 85/116 (73.28%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKL MAL LAL+ATHALARP  P  TF+DQKNFLTYGG+GGYSGIGSNGLPFGG+GG V
Sbjct: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  G--SGGDLGGGLGGPAGGIGGLGGL-----GGTGGGIGGGTGS--GLGGGSGLTNP 108
           G    G LGGGLGG A GIGGLGGL     GG G G+GGG G   G+GGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGG-ATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of CmaCh17G012360 vs. NCBI nr
Match: gi|778726832|ref|XP_011659167.1| (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 6.1e-22
Identity = 79/113 (69.91%), Postives = 87/113 (76.99%), Query Frame = 1


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKL +AL LAL+ATHALARP  P  TF+DQKNFLTYGG+GGYSGIGSNGLPFGG+GG +
Sbjct: 28  MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 87

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGTGS------GLGGGSGLTNP 108
           G  G   GGLGG  GG  G+GGLGG GGG  GG GS      G+GGGSGLTNP
Sbjct: 88  GGTGP--GGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLTNP 138

[Close]

BLAST of CmaCh17G012360 vs. NCBI nr
Match: gi|700189336|gb|KGN44569.1| (hypothetical protein Csa_7G336480 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 6.1e-22
Identity = 79/113 (69.91%), Postives = 87/113 (76.99%), Query Frame = 1


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKL +AL LAL+ATHALARP  P  TF+DQKNFLTYGG+GGYSGIGSNGLPFGG+GG +
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGTGS------GLGGGSGLTNP 108
           G  G   GGLGG  GG  G+GGLGG GGG  GG GS      G+GGGSGLTNP
Sbjct: 61  GGTGP--GGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLTNP 111

The following BLAST results are available for this feature:

BLAST of CmaCh17G012360 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9U1_CUCSA	8.6e-23	62.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336450 PE=4 SV=1	[more]
A0A0A0K6P3_CUCSA	4.3e-22	69.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336480 PE=4 SV=1	[more]
V7CWV7_PHAVU	7.1e-17	64.29	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G168900g PE=4 SV=1	[more]
I1JPC2_SOYBN	1.2e-16	65.77	Uncharacterized protein OS=Glycine max GN=GLYMA_03G170900 PE=4 SV=1	[more]
A0A0S3RYE9_PHAAN	1.5e-14	61.32	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G318500 PE=...	[more]

BLAST of CmaCh17G012360 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29030.1	1.3e-09	55.05	Putative membrane lipoprotein	[more]

BLAST of CmaCh17G012360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730344\|ref\|XP_011659762.1\|	1.2e-22	62.88	PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus]	[more]
gi\|659124371\|ref\|XP_008462124.1\|	1.6e-22	77.67	PREDICTED: acanthoscurrin-1-like [Cucumis melo]	[more]
gi\|659124133\|ref\|XP_008462002.1\|	2.1e-22	73.28	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo]	[more]
gi\|778726832\|ref\|XP_011659167.1\|	6.1e-22	69.91	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus]	[more]
gi\|700189336\|gb\|KGN44569.1\|	6.1e-22	69.91	hypothetical protein Csa_7G336480 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017975	Tubulin_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005874	microtubule
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G012360.1	CmaCh17G012360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017975	Tubulin, conserved site	PROSITE	PS00227	TUBULIN	coord: 91..97 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G012360	CsaV3_7G025650	Cucumber (Chinese Long) v3	cmacucB0457

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G012360	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G012360	Cucurbita pepo (Zucchini)	cmacpeB385
CmaCh17G012360	Bottle gourd (USVL1VR-Ls)	cmalsiB346
CmaCh17G012360	Cucumber (Gy14) v2	cgybcmaB926
CmaCh17G012360	Cucumber (Gy14) v2	cgybcmaB920
CmaCh17G012360	Silver-seed gourd	carcmaB0107
CmaCh17G012360	Silver-seed gourd	carcmaB0591
CmaCh17G012360	Cucumber (Chinese Long) v3	cmacucB0462
CmaCh17G012360	Watermelon (97103) v2	cmawmbB390
CmaCh17G012360	Wax gourd	cmawgoB0490
CmaCh17G012360	Wax gourd	cmawgoB0493
CmaCh17G012360	Cucurbita maxima (Rimu)	cmacmaB378
CmaCh17G012360	Cucumber (Gy14) v1	cgycmaB0137
CmaCh17G012360	Cucumber (Gy14) v1	cgycmaB0138
CmaCh17G012360	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G012360	Cucurbita moschata (Rifu)	cmacmoB369
CmaCh17G012360	Wild cucumber (PI 183967)	cmacpiB388
CmaCh17G012360	Cucumber (Chinese Long) v2	cmacuB384
CmaCh17G012360	Watermelon (Charleston Gray)	cmawcgB309
CmaCh17G012360	Watermelon (97103) v1	cmawmB331