CmaCh17G012350 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G012350
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr17 : 8479829 .. 8480296 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAATTGTTTATGGCTTTGCTTTTGGCTCTTGTGGCCACTCACGTCGTAGCTAGACCTGCGCCAACCCACGCCACTTTCAATGACCAAAAGAATCTCCTTGGTGGGGTTGGTGGCATCTCCGGCCTCCCGTTCGGTGGTGGTCTTGGTTTTCCCGGTGGAATCGGTGGTCTCGGTGGCCCTGGTGGTATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGCGGTCTCGGTGGCCCTGGTGGGATCGGTGGTCTCGGTGGCCCTGGTGGAATTGGTGGACTAGGTGGAGTTGGTGGTGTTGGTGGCCATAGTGGAGTTGGGGGACTGGGAGGCACTGGAGGTGGCTTGGGTGGAGGTGGAAGCGGAGGTACCGGTGGTGTTGGTGGCGGTTCTGGTGGCCCTTATCCTTGA

mRNA sequence

ATGGGCAAATTGTTTATGGCTTTGCTTTTGGCTCTTGTGGCCACTCACGTCGTAGCTAGACCTGCGCCAACCCACGCCACTTTCAATGACCAAAAGAATCTCCTTGGTGGGGTTGGTGGCATCTCCGGCCTCCCGTTCGGTGGTGGTCTTGGTTTTCCCGGTGGAATCGGTGGTCTCGGTGGCCCTGGTGGTATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGCGGTCTCGGTGGCCCTGGTGGGATCGGTGGTCTCGGTGGCCCTGGTGGAATTGGTGGACTAGGTGGAGTTGGTGGTGTTGGTGGCCATAGTGGAGTTGGGGGACTGGGAGGCACTGGAGGTGGCTTGGGTGGAGGTGGAAGCGGAGGTACCGGTGGTGTTGGTGGCGGTTCTGGTGGCCCTTATCCTTGA

Coding sequence (CDS)

ATGGGCAAATTGTTTATGGCTTTGCTTTTGGCTCTTGTGGCCACTCACGTCGTAGCTAGACCTGCGCCAACCCACGCCACTTTCAATGACCAAAAGAATCTCCTTGGTGGGGTTGGTGGCATCTCCGGCCTCCCGTTCGGTGGTGGTCTTGGTTTTCCCGGTGGAATCGGTGGTCTCGGTGGCCCTGGTGGTATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGCGGTCTCGGTGGCCCTGGTGGGATCGGTGGTCTCGGTGGCCCTGGTGGAATTGGTGGACTAGGTGGAGTTGGTGGTGTTGGTGGCCATAGTGGAGTTGGGGGACTGGGAGGCACTGGAGGTGGCTTGGGTGGAGGTGGAAGCGGAGGTACCGGTGGTGTTGGTGGCGGTTCTGGTGGCCCTTATCCTTGA

Protein sequence

MGKLFMALLLALVATHVVARPAPTHATFNDQKNLLGGVGGISGLPFGGGLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPGGIGGLGGVGGVGGHSGVGGLGGTGGGLGGGGSGGTGGVGGGSGGPYP

Homology

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BLAST of CmaCh17G012350 vs. TrEMBL
Match: A5AU90_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031043 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-10
Identity = 87/176 (49.43%), Postives = 101/176 (57.39%), Query Frame = 1


Query: 1   MGKLFMALLLALVATHVVARPAPTH----------------ATFNDQKNLL--GGVGGIS 60
           M   ++ L+LAL   H  AR  P                  A   D+KN +  GGVGG +
Sbjct: 1   MASWWVMLILALAVVHATARKVPNDQAVLDAHVPKVGTPKGAAVGDKKNFITYGGVGGFA 60

Query: 61  G----------LPFGG-----GLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLG 120
           G          LP GG     GLG  GG GGLGG GG+GGLG  GG+GGLG  GG+GGLG
Sbjct: 61  GVGGYAGVAGVLPVGGVGGVGGLGGAGGAGGLGGLGGVGGLGGAGGVGGLGGAGGVGGLG 120

Query: 121 FPGGIGGLGGPGGIGGLGGPGGIGGLGGVGGVGGHSGVGGLGG-TGGGLGGGGSGG 143
             GG+GGLGG GG+GGLGG GG+GG  G G  GG  GVGG+GG  GGG+GGG  GG
Sbjct: 121 GAGGLGGLGGAGGLGGLGGAGGLGGGAGAGAGGGVGGVGGVGGAAGGGVGGGAGGG 176

[Close]

BLAST of CmaCh17G012350 vs. TrEMBL
Match: A0A0B4XLI8_9GAMM (Uncharacterized protein OS=Alcanivorax pacificus W11-5 GN=S7S_04965 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.1e-10
Identity = 73/117 (62.39%), Postives = 92/117 (78.63%), Query Frame = 1


Query: 35  LGGVGGISGLPFGGGLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGG 94
           +GGVGG+ G+   GG+G  GG+GG+GG GG+GG+G  GG+GG+G  GG+GG+G  GG+GG
Sbjct: 279 VGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGG 338

Query: 95  LGGPGGIGGLGGPGGIGGLGGVGGVGGHSGVGGLGGTGGGLGGGGSGGTGGVGGGSG 152
           +GG GG+GG+GG GG+GG+GGVGGVGG  GVGG+GG GG  G GG GG GGVGG  G
Sbjct: 339 VGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGG 395

[Close]

BLAST of CmaCh17G012350 vs. TrEMBL
Match: F6HS53_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00530 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 87/176 (49.43%), Postives = 100/176 (56.82%), Query Frame = 1


Query: 1   MGKLFMALLLALVATHVVARPAPTH----------------ATFNDQKNLL--GGVGGIS 60
           M    + L+LAL   H  AR  P                  A   D+KN +  GGVGG +
Sbjct: 1   MASWCVMLILALAVVHATARKVPNDQAVLDAHVPKVGTPKGAAVGDKKNFITYGGVGGFA 60

Query: 61  G----------LPFGG-----GLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLG 120
           G          LP GG     GLG  GG GGLGG GG+GGLG  GG+GGLG  GG+GGLG
Sbjct: 61  GVGGYAGVAGVLPVGGVGGVGGLGGAGGAGGLGGLGGVGGLGGAGGVGGLGGAGGVGGLG 120

Query: 121 FPGGIGGLGGPGGIGGLGGPGGIGGLGGVGGVGGHSGVGGLGG-TGGGLGGGGSGG 143
             GG+GGLGG GG+GGLGG GG+GG  G G  GG  GVGG+GG  GGG+GGG  GG
Sbjct: 121 GAGGLGGLGGAGGLGGLGGAGGLGGGAGAGAGGGVGGVGGVGGAAGGGVGGGAGGG 176

[Close]

BLAST of CmaCh17G012350 vs. TrEMBL
Match: M1B6B1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014690 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 94/154 (61.04%), Postives = 109/154 (70.78%), Query Frame = 1


Query: 9   LLALVATHVVARPAPTHATFNDQKNLLG--GVGGISGLPFGGGLGFPGGIGGLGGPGGIG 68
           LLA+V T   AR  P+     DQKN +G  GVGG SG+  GGG+G  GG+GG+GG GG+G
Sbjct: 14  LLAIVCT-TRAREVPSEKGLVDQKNFVGFGGVGGFSGV--GGGVGGVGGLGGVGGLGGVG 73

Query: 69  GLGFPGGIGGLGFPGGIGGL-GFPGGIGGLGGPGGIGGLGGPGGIGGL-GGVGGVGG-HS 128
           G G  GG+GGLG  GG+GGL G  GG GGLGG GG+GG GG GG+GGL GGVGG+GG   
Sbjct: 74  GGGGLGGLGGLGGGGGLGGLGGLGGGDGGLGGLGGLGGGGGVGGLGGLGGGVGGLGGLGG 133

Query: 129 GVGGLGGTGGGLG-----GGGSGGTGGVGGGSGG 153
           GVGGLGG GGG+G     GGG GG GG+GGG GG
Sbjct: 134 GVGGLGGLGGGVGGLGGLGGGVGGLGGLGGGVGG 164

[Close]

BLAST of CmaCh17G012350 vs. TrEMBL
Match: A0A0M3TUY8_9BURK (Cell division protein FtsK OS=Burkholderia sp. HB1 GN=AC233_04615 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-09
Identity = 67/103 (65.05%), Postives = 85/103 (82.52%), Query Frame = 1


Query: 48  GGLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGP 107
           GG+G  GG+GG+GG GG+GG+G  GG+GG+G  GG+GG+G  GG+GG+GG GG+GG+GG 
Sbjct: 280 GGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGAGGVGGVGGVGGVGGVGGVGGVGGVGGV 339

Query: 108 GGIGGLGGVGGVGGHSGVGGLGGTGGGLGGGGSGGTGGVGGGS 151
           GG+GG+GGVGGVGG  GVGG+GG GGG+G GG GG GGVGG +
Sbjct: 340 GGVGGVGGVGGVGGVGGVGGVGGVGGGVGVGGVGGVGGVGGAA 382

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BLAST of CmaCh17G012350 vs. TAIR10
Match: AT4G29020.1 (AT4G29020.1 glycine-rich protein)

HSP 1 Score: 47.4 bits (111), Expect = 9.5e-06
Identity = 70/147 (47.62%), Postives = 89/147 (60.54%), Query Frame = 1


Query: 9   LLALVATHVVA--RPAPTH---ATFNDQKNLLG--GVGGISGLPFGGGLG-----FPGGI 68
           L+AL+ +  V   RPAPT    A  +DQKN +   GVGG +G+   GG+G       GG+
Sbjct: 10  LVALMVSQAVTATRPAPTKNVGAGLDDQKNFVAFAGVGGAAGIGGAGGVGAGLGGVAGGV 69

Query: 69  GGLGGP-------GGIGGLGFPGGIGGLGFPGGIGG-LGFPGGIGGLGGP-------GGI 128
           GG+ G        GGIGGLG  GG+GGLG  GG+GG  G   G+GG+GG        GG+
Sbjct: 70  GGVAGVLPVGGVGGGIGGLG--GGVGGLGGLGGLGGGSGLGHGVGGIGGDPGIGSGIGGL 129

[Close]

BLAST of CmaCh17G012350 vs. NCBI nr
Match: gi|147766421|emb|CAN73804.1| (hypothetical protein VITISV_031043 [Vitis vinifera])

HSP 1 Score: 72.4 bits (176), Expect = 7.8e-10
Identity = 87/176 (49.43%), Postives = 101/176 (57.39%), Query Frame = 1


Query: 1   MGKLFMALLLALVATHVVARPAPTH----------------ATFNDQKNLL--GGVGGIS 60
           M   ++ L+LAL   H  AR  P                  A   D+KN +  GGVGG +
Sbjct: 1   MASWWVMLILALAVVHATARKVPNDQAVLDAHVPKVGTPKGAAVGDKKNFITYGGVGGFA 60

Query: 61  G----------LPFGG-----GLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLG 120
           G          LP GG     GLG  GG GGLGG GG+GGLG  GG+GGLG  GG+GGLG
Sbjct: 61  GVGGYAGVAGVLPVGGVGGVGGLGGAGGAGGLGGLGGVGGLGGAGGVGGLGGAGGVGGLG 120

Query: 121 FPGGIGGLGGPGGIGGLGGPGGIGGLGGVGGVGGHSGVGGLGG-TGGGLGGGGSGG 143
             GG+GGLGG GG+GGLGG GG+GG  G G  GG  GVGG+GG  GGG+GGG  GG
Sbjct: 121 GAGGLGGLGGAGGLGGLGGAGGLGGGAGAGAGGGVGGVGGVGGAAGGGVGGGAGGG 176

[Close]

BLAST of CmaCh17G012350 vs. NCBI nr
Match: gi|917755154|ref|WP_052269207.1| (hypothetical protein [Alcanivorax pacificus])

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-09
Identity = 73/117 (62.39%), Postives = 92/117 (78.63%), Query Frame = 1


Query: 35  LGGVGGISGLPFGGGLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGG 94
           +GGVGG+ G+   GG+G  GG+GG+GG GG+GG+G  GG+GG+G  GG+GG+G  GG+GG
Sbjct: 272 VGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGG 331

Query: 95  LGGPGGIGGLGGPGGIGGLGGVGGVGGHSGVGGLGGTGGGLGGGGSGGTGGVGGGSG 152
           +GG GG+GG+GG GG+GG+GGVGGVGG  GVGG+GG GG  G GG GG GGVGG  G
Sbjct: 332 VGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGG 388

[Close]

BLAST of CmaCh17G012350 vs. NCBI nr
Match: gi|645259790|ref|XP_008235531.1| (PREDICTED: glycine-rich cell wall structural protein [Prunus mume])

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-09
Identity = 98/166 (59.04%), Postives = 108/166 (65.06%), Query Frame = 1


Query: 1   MGKLFMALLLALVATHVVARPAPT--HATFNDQKNLLGGVGGISG-----LPFGG-GLGF 60
           M + F+ L+LALV  H  AR  PT   A F DQKN LGGVGG SG     LPF G G G 
Sbjct: 1   MARWFIVLVLALVVAHTTARNVPTANDAGFKDQKNFLGGVGGFSGIGSNGLPFAGAGAGV 60

Query: 61  PGGIGG-LGGPGGIGGL-GFPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPGGI 120
            G +GG LGG  GIGG+ G  GG GG+G  GG GGL   GG+GGLG  GG GGLGG GG+
Sbjct: 61  GGNLGGGLGGGAGIGGVAGLGGGTGGIGDLGGAGGL---GGLGGLG--GGTGGLGGLGGL 120

Query: 121 GGLGGVGGVGGHSGVGGLGGTGGGLGGGGSGGTGGVGGGSGG-PYP 156
           G  GG GG+GG  GVGG GG GGG+GGG     GGVGGGSG  PYP
Sbjct: 121 G--GGTGGLGGLGGVGGAGGIGGGVGGGVG---GGVGGGSGVLPYP 156

[Close]

BLAST of CmaCh17G012350 vs. NCBI nr
Match: gi|745804712|gb|AJD47413.1| (hypothetical protein S7S_04965 [Alcanivorax pacificus W11-5])

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-09
Identity = 73/117 (62.39%), Postives = 92/117 (78.63%), Query Frame = 1


Query: 35  LGGVGGISGLPFGGGLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGG 94
           +GGVGG+ G+   GG+G  GG+GG+GG GG+GG+G  GG+GG+G  GG+GG+G  GG+GG
Sbjct: 279 VGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGG 338

Query: 95  LGGPGGIGGLGGPGGIGGLGGVGGVGGHSGVGGLGGTGGGLGGGGSGGTGGVGGGSG 152
           +GG GG+GG+GG GG+GG+GGVGGVGG  GVGG+GG GG  G GG GG GGVGG  G
Sbjct: 339 VGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGGVGG 395

[Close]

BLAST of CmaCh17G012350 vs. NCBI nr
Match: gi|731390143|ref|XP_010650249.1| (PREDICTED: glycine-rich cell wall structural protein [Vitis vinifera])

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-09
Identity = 87/176 (49.43%), Postives = 100/176 (56.82%), Query Frame = 1


Query: 1   MGKLFMALLLALVATHVVARPAPTH----------------ATFNDQKNLL--GGVGGIS 60
           M    + L+LAL   H  AR  P                  A   D+KN +  GGVGG +
Sbjct: 1   MASWCVMLILALAVVHATARKVPNDQAVLDAHVPKVGTPKGAAVGDKKNFITYGGVGGFA 60

Query: 61  G----------LPFGG-----GLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLG 120
           G          LP GG     GLG  GG GGLGG GG+GGLG  GG+GGLG  GG+GGLG
Sbjct: 61  GVGGYAGVAGVLPVGGVGGVGGLGGAGGAGGLGGLGGVGGLGGAGGVGGLGGAGGVGGLG 120

Query: 121 FPGGIGGLGGPGGIGGLGGPGGIGGLGGVGGVGGHSGVGGLGG-TGGGLGGGGSGG 143
             GG+GGLGG GG+GGLGG GG+GG  G G  GG  GVGG+GG  GGG+GGG  GG
Sbjct: 121 GAGGLGGLGGAGGLGGLGGAGGLGGGAGAGAGGGVGGVGGVGGAAGGGVGGGAGGG 176

The following BLAST results are available for this feature:

BLAST of CmaCh17G012350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012350 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AU90_VITVI	5.4e-10	49.43	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031043 PE=4 SV=1	[more]
A0A0B4XLI8_9GAMM	7.1e-10	62.39	Uncharacterized protein OS=Alcanivorax pacificus W11-5 GN=S7S_04965 PE=4 SV=1	[more]
F6HS53_VITVI	1.2e-09	49.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00530 PE=4 SV=...	[more]
M1B6B1_SOLTU	2.7e-09	61.04	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014690 PE=4 SV=1	[more]
A0A0M3TUY8_9BURK	3.5e-09	65.05	Cell division protein FtsK OS=Burkholderia sp. HB1 GN=AC233_04615 PE=3 SV=1	[more]

BLAST of CmaCh17G012350 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29020.1	9.5e-06	47.62	glycine-rich protein	[more]

BLAST of CmaCh17G012350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147766421\|emb\|CAN73804.1\|	7.8e-10	49.43	hypothetical protein VITISV_031043 [Vitis vinifera]	[more]
gi\|917755154\|ref\|WP_052269207.1\|	1.0e-09	62.39	hypothetical protein [Alcanivorax pacificus]	[more]
gi\|645259790\|ref\|XP_008235531.1\|	1.0e-09	59.04	PREDICTED: glycine-rich cell wall structural protein [Prunus mume]	[more]
gi\|745804712\|gb\|AJD47413.1\|	1.0e-09	62.39	hypothetical protein S7S_04965 [Alcanivorax pacificus W11-5]	[more]
gi\|731390143\|ref\|XP_010650249.1\|	1.7e-09	49.43	PREDICTED: glycine-rich cell wall structural protein [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G012350.1	CmaCh17G012350.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G012350	Carg25548	Silver-seed gourd	carcmaB0591

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G012350	Silver-seed gourd	carcmaB0107
CmaCh17G012350	Cucumber (Chinese Long) v3	cmacucB0457
CmaCh17G012350	Cucumber (Chinese Long) v3	cmacucB0462
CmaCh17G012350	Watermelon (97103) v2	cmawmbB390
CmaCh17G012350	Wax gourd	cmawgoB0490
CmaCh17G012350	Wax gourd	cmawgoB0493
CmaCh17G012350	Cucurbita maxima (Rimu)	cmacmaB378
CmaCh17G012350	Cucumber (Gy14) v1	cgycmaB0137
CmaCh17G012350	Cucumber (Gy14) v1	cgycmaB0138
CmaCh17G012350	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G012350	Cucurbita moschata (Rifu)	cmacmoB369
CmaCh17G012350	Wild cucumber (PI 183967)	cmacpiB388
CmaCh17G012350	Cucumber (Chinese Long) v2	cmacuB384
CmaCh17G012350	Watermelon (Charleston Gray)	cmawcgB309
CmaCh17G012350	Watermelon (97103) v1	cmawmB331
CmaCh17G012350	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G012350	Cucurbita pepo (Zucchini)	cmacpeB385
CmaCh17G012350	Bottle gourd (USVL1VR-Ls)	cmalsiB346
CmaCh17G012350	Cucumber (Gy14) v2	cgybcmaB926
CmaCh17G012350	Cucumber (Gy14) v2	cgybcmaB920