CmaCh17G012320 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G012320
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRNA binding protein, putative
LocationCma_Chr17 : 8469219 .. 8470133 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAGGACTGTGGCTGCATTGTTGCTAGTGACGGTGAGTTTGGTCAGGGCTCACCTCGAAGTTGAGTATGAGAGGATCAATATAAAGCTGCCACTTTCTAGGTATTACATTCATTTCGTTAACGATCTAAGCATCCTTGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGTTCATCATTTGCTTAATCGGGGAGATAATTACCAATTTAACTTTAGGGTTAACTTTTGGAGAACAACCCTCTTTTGGTGTGATGTGAATAGGCCCGATACAAACGTCTCTTTTCAATGCTTTTGGCCTGAGAAGATGAGCACATGGCTTCGTGATAGATGCCGAGATGGAAATGTAGGAACTTGTATCTGGAAGTTTAAAGACGATGGAATTTACTTGAGAAACAATGCAGCTAATACGGATGAATTGATTCATAAATGGACCTTTACGAGATAAAGAACCTTTATATACTGATGAATTGGTTCATAAATGAACCTTTACGAGATAAATAACCTTTATATACTGATGAATTGGTTCATAAATAGACCTTTACGAGATAAAGAACCTTTATATACTGGTGAATTGATTCATAAATGGACCTTTACGAGATAAATAACCTTTATTATTAATTCATTTTGTTTTTGAATTATTCCTGAACAAAGGAAAGATACAAACATTTGAAGTTCGAATAAAGAATAAGATGGGTAACACCCTTGAATGTTTTTTTTTTTTTAATATATTTGATAACTAAATTAAGTTTTTTTTTTTTGCTCTAAAATTGAAAATTAACAACAAAAATTTGAAATGATTACTTGTATTTCTAAATTGTTAGCATTATTTTATCATCAACGTTATAATATAGTATTTATAACTTTAATCTTATATTATAAGAAAGTAATTAGTATTTTATAA

mRNA sequence

ATGATAAGGACTGTGGCTGCATTGTTGCTAGTGACGGTGAGTTTGGTCAGGGCTCACCTCGAAGTTGAGTATGAGAGGATCAATATAAAGCTGCCACTTTCTAGGTATTACATTCATTTCGTTAACGATCTAAGCATCCTTGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGTTCATCATTTGCTTAATCGGGGAGATAATTACCAATTTAACTTTAGGAAAGTAATTAGTATTTTATAA

Coding sequence (CDS)

ATGATAAGGACTGTGGCTGCATTGTTGCTAGTGACGGTGAGTTTGGTCAGGGCTCACCTCGAAGTTGAGTATGAGAGGATCAATATAAAGCTGCCACTTTCTAGGTATTACATTCATTTCGTTAACGATCTAAGCATCCTTGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGTTCATCATTTGCTTAATCGGGGAGATAATTACCAATTTAACTTTAGGAAAGTAATTAGTATTTTATAA

Protein sequence

MIRTVAALLLVTVSLVRAHLEVEYERINIKLPLSRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRKVISIL
Homology
[Close]
BLAST of CmaCh17G012320 vs. NCBI nr
Match: gi|659116532|ref|XP_008458117.1| (PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-10
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 33 LSRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRK 79
          ++RYYIH +N LS   ++VHCQSKDDDLG HHL NRGD+YQ+NF++
Sbjct: 19 VTRYYIHVMNGLSNADLIVHCQSKDDDLGYHHLANRGDDYQWNFKE 64

[Close]
BLAST of CmaCh17G012320 vs. NCBI nr
Match: gi|659124355|ref|XP_008462115.1| (PREDICTED: uncharacterized protein LOC103500543 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-09
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 

Query: 34 SRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRK 79
          SRY++H VN LS   + VHCQSK+DDLG HHL+NRGD YQ+NF +
Sbjct: 19 SRYFVHVVNGLSYQSLDVHCQSKNDDLGYHHLVNRGDEYQWNFEE 63

[Close]
BLAST of CmaCh17G012320 vs. NCBI nr
Match: gi|449443921|ref|XP_004139724.1| (PREDICTED: uncharacterized protein LOC101205731 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-09
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 1 

Query: 26 RINIKLPLSRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRK 79
          ++ I+LP  RY+IH  NDL+   M  HCQSKDDDLG+ HL++RGD +++NF++
Sbjct: 14 KVVIRLPPVRYFIHVANDLTNQDMSAHCQSKDDDLGIQHLVHRGDEFRWNFKE 66

[Close]
BLAST of CmaCh17G012320 vs. NCBI nr
Match: gi|778730337|ref|XP_004139721.2| (PREDICTED: uncharacterized protein LOC101204770 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1 

Query: 34 SRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRK 79
          SRY++H VN LS   + VHCQSKD+DLG HHL+N GD +Q+NF +
Sbjct: 17 SRYFVHVVNGLSYQSLDVHCQSKDNDLGYHHLVNHGDEFQWNFEE 61

[Close]
BLAST of CmaCh17G012320 vs. NCBI nr
Match: gi|659124349|ref|XP_008462111.1| (PREDICTED: pumilio homolog 15-like [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-08
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 

Query: 34 SRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRK 79
          SRY++H VN LS   + VHCQSKDDDLG H L+N GD++Q+NFR+
Sbjct: 19 SRYFVHVVNGLSYHNLDVHCQSKDDDLGYHCLVNHGDDFQWNFRE 63

The following BLAST results are available for this feature:
BLAST of CmaCh17G012320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G012320 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh17G012320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G012320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116532|ref|XP_008458117.1|3.2e-1065.22PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo][more]
gi|659124355|ref|XP_008462115.1|2.7e-0964.44PREDICTED: uncharacterized protein LOC103500543 [Cucumis melo][more]
gi|449443921|ref|XP_004139724.1|3.5e-0952.83PREDICTED: uncharacterized protein LOC101205731 [Cucumis sativus][more]
gi|778730337|ref|XP_004139721.2|3.0e-0860.00PREDICTED: uncharacterized protein LOC101204770 [Cucumis sativus][more]
gi|659124349|ref|XP_008462111.1|3.9e-0862.22PREDICTED: pumilio homolog 15-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G012320.1CmaCh17G012320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 38..79
score: 8.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G012320Cla97C09G172170Watermelon (97103) v2cmawmbB390
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G012320Wax gourdcmawgoB0493
CmaCh17G012320Cucurbita maxima (Rimu)cmacmaB378
CmaCh17G012320Cucumber (Gy14) v1cgycmaB0137
CmaCh17G012320Cucumber (Gy14) v1cgycmaB0138
CmaCh17G012320Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G012320Cucurbita moschata (Rifu)cmacmoB369
CmaCh17G012320Wild cucumber (PI 183967)cmacpiB388
CmaCh17G012320Cucumber (Chinese Long) v2cmacuB384
CmaCh17G012320Watermelon (Charleston Gray)cmawcgB309
CmaCh17G012320Watermelon (97103) v1cmawmB331
CmaCh17G012320Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G012320Cucurbita pepo (Zucchini)cmacpeB385
CmaCh17G012320Bottle gourd (USVL1VR-Ls)cmalsiB346
CmaCh17G012320Cucumber (Gy14) v2cgybcmaB926
CmaCh17G012320Cucumber (Gy14) v2cgybcmaB920
CmaCh17G012320Silver-seed gourdcarcmaB0107
CmaCh17G012320Cucumber (Chinese Long) v3cmacucB0457
CmaCh17G012320Cucumber (Chinese Long) v3cmacucB0462