CmaCh17G008950 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G008950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr17 : 6787600 .. 6788585 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGAGAGATGGATGTCCCAAAATCCGAAGCTTCATCTGATATGTAAGCTTCGTTCTTATGTGACCGTAATTTTCTAAAACTTGTTTTTGTTAGCTAAGATTCCTTCCCGGTTCGACGAGTCAAAATTCCTGAAATCGTTCCTCCGACTTTTCATTGGCGATTCTGATTAAGCTACTTTTACATATATGGGTTTCTGGTACTTGTTATTAATTATTCCACAACCAAATCACAAATATTTTTGTTTTACTTTTTAGTAGACTGCGAAAGAGGAAAAGGAAAAGGAAAAACAAGTCAGAATCAGACAAGGAGGAAATAAACGGTTCTCCAACCAGAAGGTTGCTTGCTTGCTTGCTTGCTTGCAAAGTGTTTACTTTATCCATTTCACTTTCTTGTTTGGCTTCCAGGTTCTATCAAATGTTCTTGGAATTGCAGGGGTAGAGCTTCAGCCAAGAGGAAATCGGAAGCTACATCATCGACATTGCGCAAGAAAGCTGCCAACAGTTCCATGCTCGACGATGGAGGTTGCATCAATAATAGTACAAAAGGAAATGATAAAAACCTCATAAACTTGATAAAAAACAGTAGACTAAGGATTAGCTTAAAGTCCAAGCCGAATGGTGGCCGGGATTAACGCACCAAGAGACGAAGCTGAACCCCTTGGCACCAAAAATTTAGCAGGATTAGAGATGCGAGAACCTCTTACCATCGTTTTGCCAGTTAGGAAAGAGCATAGGCCAGCATAGTTCCTTGCTTTTGTGTCCTAAGACGTAGAAAGGAAAACAGGATTTCAGCTAACCAGTCTTCTAAACAGTAGAGCCATCATATATAAACAAACCTCCATGTATAGGCAGACAGTTATTATGTCAAAGCTATCTCTTTCTGACATGTTTAGATAATATAAGTTATAATACTTGATCCATTGACAGATCAAATACCAGAATGCGTCGGTTGTGTACTGAAATTCCGAGCTCTTCCTCACTG

mRNA sequence

ATGAGGAGAGAGATGGATGTCCCAAAATCCGAAGCTTCATCTGATATTAGACTGCGAAAGAGGAAAAGGAAAAGGAAAAACAAGTCAGAATCAGACAAGGAGGAAATAAACGGTTCTCCAACCAGAAGGGGTAGAGCTTCAGCCAAGAGGAAATCGGAAGCTACATCATCGACATTGCGCAAGAAAGCTGCCAACAGTTCCATGCTCGACGATGGAGGTTGCATCAATAATAGTACAAAAGGAAATGATAAAAACCTCATAAACTTGATAAAAAACAGTAGACTAAGGATTAGCTTAAAGTCCAAGCCGAATGGTGGCCGGGATTAACGCACCAAGAGACGAAGCTGAACCCCTTGGCACCAAAAATTTAGCAGGATTAGAGATGCGAGAACCTCTTACCATCGTTTTGCCAGTTAGGAAAGAGCATAGGCCAGCATAGTTCCTTGCTTTTGTGTCCTAAGACGTAGAAAGGAAAACAGGATTTCAGCTAACCAGTCTTCTAAACAGTAGAGCCATCATATATAAACAAACCTCCATGTATAGGCAGACAGTTATTATGTCAAAGCTATCTCTTTCTGACATGTTTAGATAATATAAGTTATAATACTTGATCCATTGACAGATCAAATACCAGAATGCGTCGGTTGTGTACTGAAATTCCGAGCTCTTCCTCACTG

Coding sequence (CDS)

ATGAGGAGAGAGATGGATGTCCCAAAATCCGAAGCTTCATCTGATATTAGACTGCGAAAGAGGAAAAGGAAAAGGAAAAACAAGTCAGAATCAGACAAGGAGGAAATAAACGGTTCTCCAACCAGAAGGGGTAGAGCTTCAGCCAAGAGGAAATCGGAAGCTACATCATCGACATTGCGCAAGAAAGCTGCCAACAGTTCCATGCTCGACGATGGAGGTTGCATCAATAATAGTACAAAAGGAAATGATAAAAACCTCATAAACTTGATAAAAAACAGTAGACTAAGGATTAGCTTAAAGTCCAAGCCGAATGGTGGCCGGGATTAA

Protein sequence

MRREMDVPKSEASSDIRLRKRKRKRKNKSESDKEEINGSPTRRGRASAKRKSEATSSTLRKKAANSSMLDDGGCINNSTKGNDKNLINLIKNSRLRISLKSKPNGGRD

Homology

[Close]

BLAST of CmaCh17G008950 vs. TrEMBL
Match: A0A0A0KBP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432020 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-19
Identity = 73/116 (62.93%), Postives = 84/116 (72.41%), Query Frame = 1


Query: 4   EMDVPKSEASSDIRLRKRKRKRKNKSESDKEEINGSPTRRGRASAKRKSEATSSTLRKKA 63
           EMDVP++EASSDI    RKRKRKN SESDKEE   S TRR RAS KRKS+  S+   +KA
Sbjct: 816 EMDVPETEASSDIL---RKRKRKNMSESDKEEKTYSSTRRVRASTKRKSDVKSAKSSEKA 875

Query: 64  ANSSML----------DDGGCINNSTKGNDKNLINLIKNSRLRISLKSKPN-GGRD 109
           ANSSML          D+ G ++NSTKGNDK LI+LIKNSRLRI+LKSK N  GR+
Sbjct: 876 ANSSMLRKHVISDESMDEAGSVDNSTKGNDKKLIDLIKNSRLRINLKSKQNASGRE 928

[Close]

BLAST of CmaCh17G008950 vs. NCBI nr
Match: gi|778728944|ref|XP_011659505.1| (PREDICTED: uncharacterized protein LOC101213167 isoform X3 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-19
Identity = 73/116 (62.93%), Postives = 84/116 (72.41%), Query Frame = 1


Query: 4   EMDVPKSEASSDIRLRKRKRKRKNKSESDKEEINGSPTRRGRASAKRKSEATSSTLRKKA 63
           EMDVP++EASSDI    RKRKRKN SESDKEE   S TRR RAS KRKS+  S+   +KA
Sbjct: 643 EMDVPETEASSDIL---RKRKRKNMSESDKEEKTYSSTRRVRASTKRKSDVKSAKSSEKA 702

Query: 64  ANSSML----------DDGGCINNSTKGNDKNLINLIKNSRLRISLKSKPN-GGRD 109
           ANSSML          D+ G ++NSTKGNDK LI+LIKNSRLRI+LKSK N  GR+
Sbjct: 703 ANSSMLRKHVISDESMDEAGSVDNSTKGNDKKLIDLIKNSRLRINLKSKQNASGRE 755

[Close]

BLAST of CmaCh17G008950 vs. NCBI nr
Match: gi|778728934|ref|XP_011659503.1| (PREDICTED: uncharacterized protein LOC101213167 isoform X1 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-19
Identity = 73/116 (62.93%), Postives = 84/116 (72.41%), Query Frame = 1


Query: 4   EMDVPKSEASSDIRLRKRKRKRKNKSESDKEEINGSPTRRGRASAKRKSEATSSTLRKKA 63
           EMDVP++EASSDI    RKRKRKN SESDKEE   S TRR RAS KRKS+  S+   +KA
Sbjct: 816 EMDVPETEASSDIL---RKRKRKNMSESDKEEKTYSSTRRVRASTKRKSDVKSAKSSEKA 875

Query: 64  ANSSML----------DDGGCINNSTKGNDKNLINLIKNSRLRISLKSKPN-GGRD 109
           ANSSML          D+ G ++NSTKGNDK LI+LIKNSRLRI+LKSK N  GR+
Sbjct: 876 ANSSMLRKHVISDESMDEAGSVDNSTKGNDKKLIDLIKNSRLRINLKSKQNASGRE 928

[Close]

BLAST of CmaCh17G008950 vs. NCBI nr
Match: gi|659122497|ref|XP_008461176.1| (PREDICTED: neurofilament medium polypeptide-like isoform X2 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 70/116 (60.34%), Postives = 82/116 (70.69%), Query Frame = 1


Query: 4   EMDVPKSEASSDIRLRKRKRKRKNKSESDKEEINGSPTRRGRASAKRKSEATSSTLRKKA 63
           E DVP++EAS DI    RKRKRKN SESDKEE   S TRR RAS KRKS+  S+   +KA
Sbjct: 533 EKDVPETEASLDIL---RKRKRKNMSESDKEEKTDSSTRRIRASTKRKSDIKSAKSSEKA 592

Query: 64  ANSSM----------LDDGGCINNSTKGNDKNLINLIKNSRLRISLKSKPN-GGRD 109
           A+SSM          +DD G ++NSTKGNDK LI+LIKNSRLRI+LKSK N  GR+
Sbjct: 593 ADSSMSRKPAVSDESMDDAGSVDNSTKGNDKKLIDLIKNSRLRINLKSKQNVAGRE 645

[Close]

BLAST of CmaCh17G008950 vs. NCBI nr
Match: gi|659122495|ref|XP_008461175.1| (PREDICTED: transcriptional regulator ATRX homolog isoform X1 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 70/116 (60.34%), Postives = 82/116 (70.69%), Query Frame = 1


Query: 4   EMDVPKSEASSDIRLRKRKRKRKNKSESDKEEINGSPTRRGRASAKRKSEATSSTLRKKA 63
           E DVP++EAS DI    RKRKRKN SESDKEE   S TRR RAS KRKS+  S+   +KA
Sbjct: 535 EKDVPETEASLDIL---RKRKRKNMSESDKEEKTDSSTRRIRASTKRKSDIKSAKSSEKA 594

Query: 64  ANSSM----------LDDGGCINNSTKGNDKNLINLIKNSRLRISLKSKPN-GGRD 109
           A+SSM          +DD G ++NSTKGNDK LI+LIKNSRLRI+LKSK N  GR+
Sbjct: 595 ADSSMSRKPAVSDESMDDAGSVDNSTKGNDKKLIDLIKNSRLRINLKSKQNVAGRE 647

The following BLAST results are available for this feature:

BLAST of CmaCh17G008950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G008950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBP5_CUCSA	1.5e-19	62.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432020 PE=4 SV=1	[more]

BLAST of CmaCh17G008950 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh17G008950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778728944\|ref\|XP_011659505.1\|	2.2e-19	62.93	PREDICTED: uncharacterized protein LOC101213167 isoform X3 [Cucumis sativus]	[more]
gi\|778728934\|ref\|XP_011659503.1\|	2.2e-19	62.93	PREDICTED: uncharacterized protein LOC101213167 isoform X1 [Cucumis sativus]	[more]
gi\|659122497\|ref\|XP_008461176.1\|	1.2e-17	60.34	PREDICTED: neurofilament medium polypeptide-like isoform X2 [Cucumis melo]	[more]
gi\|659122495\|ref\|XP_008461175.1\|	1.2e-17	60.34	PREDICTED: transcriptional regulator ATRX homolog isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G008950.1	CmaCh17G008950.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G008950	Wax gourd	cmawgoB0487
CmaCh17G008950	Cucurbita maxima (Rimu)	cmacmaB360
CmaCh17G008950	Cucurbita maxima (Rimu)	cmacmaB382
CmaCh17G008950	Cucumber (Gy14) v1	cgycmaB0237
CmaCh17G008950	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G008950	Cucurbita moschata (Rifu)	cmacmoB354
CmaCh17G008950	Cucurbita moschata (Rifu)	cmacmoB374
CmaCh17G008950	Wild cucumber (PI 183967)	cmacpiB392
CmaCh17G008950	Cucumber (Chinese Long) v2	cmacuB388
CmaCh17G008950	Melon (DHL92) v3.5.1	cmameB326
CmaCh17G008950	Watermelon (Charleston Gray)	cmawcgB306
CmaCh17G008950	Watermelon (97103) v1	cmawmB328
CmaCh17G008950	Cucurbita pepo (Zucchini)	cmacpeB399
CmaCh17G008950	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G008950	Cucurbita pepo (Zucchini)	cmacpeB376
CmaCh17G008950	Bottle gourd (USVL1VR-Ls)	cmalsiB348
CmaCh17G008950	Cucumber (Gy14) v2	cgybcmaB925
CmaCh17G008950	Melon (DHL92) v3.6.1	cmamedB379
CmaCh17G008950	Silver-seed gourd	carcmaB0277
CmaCh17G008950	Silver-seed gourd	carcmaB0497
CmaCh17G008950	Silver-seed gourd	carcmaB0625
CmaCh17G008950	Cucumber (Chinese Long) v3	cmacucB0462
CmaCh17G008950	Watermelon (97103) v2	cmawmbB387