CmaCh17G008710 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G008710
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 6677914 .. 6678957 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTAGCGCATTAGAACCTTGGAAAACCGGAATAAGAGGATAGTTTCGAAGCTTCCATCGCGGTGGTTGAGCTCGGCAAAGTTGGAAATCCACTGTACACAAAAAAAAAAAAAAAAATAGAGAAAATCGGATACTTACCGGACCCGACCCGCCGTGGTTTTCAGGTCGACGGCGTTGTTCCTTCTCGGATTACAGCTTCAGAATCGTCCAACGTCTATCTACGACTACGGCCAAGATCTCACGTTCTCCATCAATGTTCTGTAATTCCCTTCAATCCTCTCTCTTTTCTCTACTTGAACTGTCTTCCAGGGTTTAGTTTTATGCTGTCATTCTCTTTCCGGGATGTATTTTGAACTTCCTTTTGTGTACAATTGCATTGCGGGAAGGGGAAAGTTGAGAGACGACAGAAACCAAGTTATTTTTTCGTGTTAAAAATTTGGTAATTCGACGATTTGTGATGTTTGTCTGTTTTCACCTGAAGGATAAGATTCAAGATTGTTGTTGAGTTTTGATTTCTGGTAATCTTCAATGGTGGATTTGCTTGGAACTTATGTGATCAGGGCGCAGGAAGGAAATCCCTAATTTAATGTTTCAGGAACCTGAGATACACAGAAACCGATTTGTTACCTGGTAGTTTCTTGTAGATTCTCGTGTTGTCTGAATCATTTTGTTTCTCTTGACATAAAATTTCTTCCTAATTTGTAGAAACGAGTTTCTTTTGTTTACTTTTATGGCATTGAAACCTGATTAGTTTGTGAGCCGATGGAGACCTGGAATTGAGGATGGTTGAAAATTGAAGTACTTCATTGTACATTATCCTAATAGATTGATTTCGTTAATATAATTGTTAAGAACTGACTCTCTATACTTGTTTGATCTCTGCGAGCTGCTGGCTTGATTTTTACTTTACTGAAAAATTAGAGCCTAATCTGTTTATTGTCTTCCCGATCTGTCTCTGCCTTCCTCAGAATCTTAAGCCATTTAGTTTTGTAATTGTTCATATGCTGATTAAGAAACGGTTAATTCTTGTTAGGGGCTGA

mRNA sequence

ATGGCCGATAGTTTCGAAGCTTCCATCGCGGTGGTTGAGCTCGGCAAAGTTGGAAATCCACTGTACACAAAAAAAAAAAAAAAAATAGAGAAAATCGGATACTTACCGGACCCGACCCGCCGTGGTTTTCAGGTCGACGGCGTTGTTCCTTCTCGGATTACAGCTTCAGAATCGTCCAACGTCTATCTACGACTACGGCCAAGATCTCACGTTCTCCATCAATGTTCTGGTTTAGTTTTATGCTGTCATTCTCTTTCCGGGATGTATTTTGAACTTCCTTTTGTGTACAATTGCATTGCGGGAAGGGGAAAGTTGAGAGACGACAGAAACCAAGAACCTGAGATACACAGAAACCGATTTGTTACCTGGGGCTGA

Coding sequence (CDS)

ATGGCCGATAGTTTCGAAGCTTCCATCGCGGTGGTTGAGCTCGGCAAAGTTGGAAATCCACTGTACACAAAAAAAAAAAAAAAAATAGAGAAAATCGGATACTTACCGGACCCGACCCGCCGTGGTTTTCAGGTCGACGGCGTTGTTCCTTCTCGGATTACAGCTTCAGAATCGTCCAACGTCTATCTACGACTACGGCCAAGATCTCACGTTCTCCATCAATGTTCTGGTTTAGTTTTATGCTGTCATTCTCTTTCCGGGATGTATTTTGAACTTCCTTTTGTGTACAATTGCATTGCGGGAAGGGGAAAGTTGAGAGACGACAGAAACCAAGAACCTGAGATACACAGAAACCGATTTGTTACCTGGGGCTGA

Protein sequence

MADSFEASIAVVELGKVGNPLYTKKKKKIEKIGYLPDPTRRGFQVDGVVPSRITASESSNVYLRLRPRSHVLHQCSGLVLCCHSLSGMYFELPFVYNCIAGRGKLRDDRNQEPEIHRNRFVTWG
Homology
[Close]
BLAST of CmaCh17G008710 vs. TrEMBL
Match: A0A0A0K6X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432400 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1 

Query: 23  TKKKKKIEKIGYLPDPTRRGFQVDG----VVPSRITASESSNVYLRLRPRSHVLHQCSGL 82
           T+KK KI      P  TR    +      ++ S++    +S    +LRPRSH+LHQCSGL
Sbjct: 23  TEKKVKINLSNSDPYRTRPAVVLRSTAFILLGSQLQNRPASIGNWQLRPRSHLLHQCSGL 82

Query: 83  VLCCHSLSGMYFELPFVYNCIAGRGKLRDDRN 111
             CCH LSG YFELPF YNC+ GRGKL ++ N
Sbjct: 83  FFCCHFLSGNYFELPFAYNCVPGRGKLTNEMN 114

[Close]
BLAST of CmaCh17G008710 vs. NCBI nr
Match: gi|700190025|gb|KGN45258.1| (hypothetical protein Csa_7G432400 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-13
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1 

Query: 23  TKKKKKIEKIGYLPDPTRRGFQVDG----VVPSRITASESSNVYLRLRPRSHVLHQCSGL 82
           T+KK KI      P  TR    +      ++ S++    +S    +LRPRSH+LHQCSGL
Sbjct: 23  TEKKVKINLSNSDPYRTRPAVVLRSTAFILLGSQLQNRPASIGNWQLRPRSHLLHQCSGL 82

Query: 83  VLCCHSLSGMYFELPFVYNCIAGRGKLRDDRN 111
             CCH LSG YFELPF YNC+ GRGKL ++ N
Sbjct: 83  FFCCHFLSGNYFELPFAYNCVPGRGKLTNEMN 114

The following BLAST results are available for this feature:
BLAST of CmaCh17G008710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G008710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6X3_CUCSA1.4e-1347.83Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432400 PE=4 SV=1[more]
BLAST of CmaCh17G008710 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G008710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190025|gb|KGN45258.1|2.1e-1347.83hypothetical protein Csa_7G432400 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G008710.1CmaCh17G008710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G008710Csa7G432400Cucumber (Chinese Long) v2cmacuB388
CmaCh17G008710ClCG09G003030Watermelon (Charleston Gray)cmawcgB306
CmaCh17G008710Lsi02G027000Bottle gourd (USVL1VR-Ls)cmalsiB348
CmaCh17G008710CsaV3_7G032280Cucumber (Chinese Long) v3cmacucB0462
CmaCh17G008710Cla97C09G165230Watermelon (97103) v2cmawmbB387
CmaCh17G008710Bhi09G000006Wax gourdcmawgoB0492
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G008710Cucurbita maxima (Rimu)cmacmaB175
CmaCh17G008710Cucurbita maxima (Rimu)cmacmaB360
CmaCh17G008710Cucurbita maxima (Rimu)cmacmaB368
CmaCh17G008710Cucurbita maxima (Rimu)cmacmaB382
CmaCh17G008710Cucumber (Gy14) v1cgycmaB0237
CmaCh17G008710Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G008710Cucurbita moschata (Rifu)cmacmoB361
CmaCh17G008710Cucurbita moschata (Rifu)cmacmoB374
CmaCh17G008710Wild cucumber (PI 183967)cmacpiB392
CmaCh17G008710Melon (DHL92) v3.5.1cmameB326
CmaCh17G008710Melon (DHL92) v3.5.1cmameB348
CmaCh17G008710Watermelon (Charleston Gray)cmawcgB332
CmaCh17G008710Watermelon (97103) v1cmawmB328
CmaCh17G008710Watermelon (97103) v1cmawmB339
CmaCh17G008710Cucurbita pepo (Zucchini)cmacpeB399
CmaCh17G008710Cucurbita pepo (Zucchini)cmacpeB369
CmaCh17G008710Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G008710Cucurbita pepo (Zucchini)cmacpeB376
CmaCh17G008710Bottle gourd (USVL1VR-Ls)cmalsiB343
CmaCh17G008710Cucumber (Gy14) v2cgybcmaB196
CmaCh17G008710Cucumber (Gy14) v2cgybcmaB502
CmaCh17G008710Cucumber (Gy14) v2cgybcmaB925
CmaCh17G008710Melon (DHL92) v3.6.1cmamedB379
CmaCh17G008710Melon (DHL92) v3.6.1cmamedB402
CmaCh17G008710Silver-seed gourdcarcmaB0192
CmaCh17G008710Silver-seed gourdcarcmaB0277
CmaCh17G008710Silver-seed gourdcarcmaB0799
CmaCh17G008710Silver-seed gourdcarcmaB1419
CmaCh17G008710Cucumber (Chinese Long) v3cmacucB0423
CmaCh17G008710Cucumber (Chinese Long) v3cmacucB0436
CmaCh17G008710Watermelon (97103) v2cmawmbB362
CmaCh17G008710Watermelon (97103) v2cmawmbB382