CmaCh17G008480 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G008480
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDUF761 domain protein
LocationCma_Chr17 : 6597277 .. 6597528 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACACATCCCAACCAGCTTTTTCTACCGCCGCCGCCGCCGGTAGCCGTAAGCAGCAGCAGCAGCAGCCGCCGCCCCCTCGCCAAGAGAGGATCAAGATGGAGAAAACGCCGACCGTGACAGTGTCGGTGACGGAGGATGTTAATGAAAGTGCTGAAGCTTTCATTAAGAGGTTCAGAAATCAGTTGCTGATTCAGAGGCTTCAATCCATTGAAAATTATGAGAAAATTCTCGCCGGTGAAACTTGA

mRNA sequence

ATGAAGAACACATCCCAACCAGCTTTTTCTACCGCCGCCGCCGCCGGTAGCCGTAAGCAGCAGCAGCAGCAGCCGCCGCCCCCTCGCCAAGAGAGGATCAAGATGGAGAAAACGCCGACCGTGACAGTGTCGGTGACGGAGGATGTTAATGAAAGTGCTGAAGCTTTCATTAAGAGGTTCAGAAATCAGTTGCTGATTCAGAGGCTTCAATCCATTGAAAATTATGAGAAAATTCTCGCCGGTGAAACTTGA

Coding sequence (CDS)

ATGAAGAACACATCCCAACCAGCTTTTTCTACCGCCGCCGCCGCCGGTAGCCGTAAGCAGCAGCAGCAGCAGCCGCCGCCCCCTCGCCAAGAGAGGATCAAGATGGAGAAAACGCCGACCGTGACAGTGTCGGTGACGGAGGATGTTAATGAAAGTGCTGAAGCTTTCATTAAGAGGTTCAGAAATCAGTTGCTGATTCAGAGGCTTCAATCCATTGAAAATTATGAGAAAATTCTCGCCGGTGAAACTTGA

Protein sequence

MKNTSQPAFSTAAAAGSRKQQQQQPPPPRQERIKMEKTPTVTVSVTEDVNESAEAFIKRFRNQLLIQRLQSIENYEKILAGET
Homology
[Close]
BLAST of CmaCh17G008480 vs. TrEMBL
Match: A0A0A0K6D1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433160 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12
Identity = 56/89 (62.92%), Postives = 62/89 (69.66%), Query Frame = 1 

Query: 2   KNTSQPAFSTAAAAGSRKQQQQQPPPPRQ-------ERIKMEKTPTVTVSVTEDVNESAE 61
           KN+  PA S  AA G  K Q   PP P         ER K+E+T    V+VTEDVNESAE
Sbjct: 21  KNSELPAVS--AAGGINKLQP--PPCPSSPLRFCGGERRKLERT----VTVTEDVNESAE 80

Query: 62  AFIKRFRNQLLIQRLQSIENYEKILAGET 84
           AFI++FRNQLLIQRLQSIENYEKILAGET
Sbjct: 81  AFIQKFRNQLLIQRLQSIENYEKILAGET 101

[Close]
BLAST of CmaCh17G008480 vs. TrEMBL
Match: B9RV36_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0898820 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-07
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 24 QPPPPRQERIKMEKTPTVTVSVTEDVNESAEAFIKRFRNQLLIQRLQSIENYEKILAGET 83
          +PPP +Q    +E  P+V      D+NESAEAFIK+FR QLLIQRL+SIENYEK+LA E+
Sbjct: 48 KPPPQKQ----LESKPSV------DINESAEAFIKKFRKQLLIQRLESIENYEKMLARES 97

[Close]
BLAST of CmaCh17G008480 vs. TrEMBL
Match: M5WWR7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026148mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.7e-07
Identity = 29/35 (82.86%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 46 TEDVNESAEAFIKRFRNQLLIQRLQSIENYEKILA 81
          TED+NESAEAFIK+FR QLLIQRL+SIENYE++LA
Sbjct: 57 TEDINESAEAFIKKFRKQLLIQRLESIENYEQMLA 91

[Close]
BLAST of CmaCh17G008480 vs. TrEMBL
Match: A0A061GA92_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_028275 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 34  KMEKTPTVTVSVTEDVNESAEAFIKRFRNQLLIQRLQSIENYEKILA 81
           K+EK P+V      D+NESAEAFIK+FR+QLL+QRL+SIENYE++LA
Sbjct: 75  KLEKKPSV------DINESAEAFIKKFRHQLLLQRLESIENYEQMLA 115

[Close]
BLAST of CmaCh17G008480 vs. TrEMBL
Match: A0A0D2UPN4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G081800 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 34 KMEKTPTVTVSVTEDVNESAEAFIKRFRNQLLIQRLQSIENYEKILA 81
          K+EK P+V      D+NESAEAFI++FR+QLL+QRL+SIENYEK+LA
Sbjct: 48 KLEKKPSV------DINESAEAFIQKFRHQLLLQRLESIENYEKMLA 88

[Close]
BLAST of CmaCh17G008480 vs. NCBI nr
Match: gi|659122354|ref|XP_008461097.1| (PREDICTED: uncharacterized protein LOC103499787 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 6.2e-14
Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 1 

Query: 1  MKNTSQPAFSTAAAAGSRKQQQQQPPPPRQ-------ERIKMEKTPTVTVSVTEDVNESA 60
          MK +S+    +AAA G  K Q   PP P         ER K+E+T  VTV+VTEDV+ESA
Sbjct: 1  MKKSSELPTVSAAAGGINKLQP--PPSPSSPLRGCGGERRKLERT--VTVTVTEDVDESA 60

Query: 61 EAFIKRFRNQLLIQRLQSIENYEKILAGET 84
          EAFIK+FRNQLLIQRLQSIENYE+ILAGET
Sbjct: 61 EAFIKKFRNQLLIQRLQSIENYERILAGET 86

[Close]
BLAST of CmaCh17G008480 vs. NCBI nr
Match: gi|700190052|gb|KGN45285.1| (hypothetical protein Csa_7G433160 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 56/89 (62.92%), Postives = 62/89 (69.66%), Query Frame = 1 

Query: 2   KNTSQPAFSTAAAAGSRKQQQQQPPPPRQ-------ERIKMEKTPTVTVSVTEDVNESAE 61
           KN+  PA S  AA G  K Q   PP P         ER K+E+T    V+VTEDVNESAE
Sbjct: 21  KNSELPAVS--AAGGINKLQP--PPCPSSPLRFCGGERRKLERT----VTVTEDVNESAE 80

Query: 62  AFIKRFRNQLLIQRLQSIENYEKILAGET 84
           AFI++FRNQLLIQRLQSIENYEKILAGET
Sbjct: 81  AFIQKFRNQLLIQRLQSIENYEKILAGET 101

[Close]
BLAST of CmaCh17G008480 vs. NCBI nr
Match: gi|223543237|gb|EEF44769.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 24 QPPPPRQERIKMEKTPTVTVSVTEDVNESAEAFIKRFRNQLLIQRLQSIENYEKILAGET 83
          +PPP +Q    +E  P+V      D+NESAEAFIK+FR QLLIQRL+SIENYEK+LA E+
Sbjct: 48 KPPPQKQ----LESKPSV------DINESAEAFIKKFRKQLLIQRLESIENYEKMLARES 97

[Close]
BLAST of CmaCh17G008480 vs. NCBI nr
Match: gi|645277309|ref|XP_008243711.1| (PREDICTED: uncharacterized protein LOC103341941 [Prunus mume])

HSP 1 Score: 61.2 bits (147), Expect = 9.6e-07
Identity = 29/35 (82.86%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 46 TEDVNESAEAFIKRFRNQLLIQRLQSIENYEKILA 81
          TED+NESAEAFIK+FR QLLIQRL+SIENYE++LA
Sbjct: 50 TEDINESAEAFIKKFRKQLLIQRLESIENYEQMLA 84

[Close]
BLAST of CmaCh17G008480 vs. NCBI nr
Match: gi|595953069|ref|XP_007216477.1| (hypothetical protein PRUPE_ppa026148mg [Prunus persica])

HSP 1 Score: 61.2 bits (147), Expect = 9.6e-07
Identity = 29/35 (82.86%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 46 TEDVNESAEAFIKRFRNQLLIQRLQSIENYEKILA 81
          TED+NESAEAFIK+FR QLLIQRL+SIENYE++LA
Sbjct: 57 TEDINESAEAFIKKFRKQLLIQRLESIENYEQMLA 91

The following BLAST results are available for this feature:
BLAST of CmaCh17G008480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G008480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6D1_CUCSA1.1e-1262.92Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433160 PE=4 SV=1[more]
B9RV36_RICCO1.4e-0760.00Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0898820 PE=4 SV=1[more]
M5WWR7_PRUPE6.7e-0782.86Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026148mg PE=4 SV=1[more]
A0A061GA92_THECC1.1e-0665.96Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_028275 PE=4 SV=1[more]
A0A0D2UPN4_GOSRA1.1e-0665.96Uncharacterized protein OS=Gossypium raimondii GN=B456_011G081800 PE=4 SV=1[more]
BLAST of CmaCh17G008480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G008480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122354|ref|XP_008461097.1|6.2e-1462.22PREDICTED: uncharacterized protein LOC103499787 [Cucumis melo][more]
gi|700190052|gb|KGN45285.1|1.5e-1262.92hypothetical protein Csa_7G433160 [Cucumis sativus][more]
gi|223543237|gb|EEF44769.1|1.9e-0760.00conserved hypothetical protein [Ricinus communis][more]
gi|645277309|ref|XP_008243711.1|9.6e-0782.86PREDICTED: uncharacterized protein LOC103341941 [Prunus mume][more]
gi|595953069|ref|XP_007216477.1|9.6e-0782.86hypothetical protein PRUPE_ppa026148mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008480DUF761_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G008480.1CmaCh17G008480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 47..80
score: 1.1
NoneNo IPR availablePANTHERPTHR33098FAMILY NOT NAMEDcoord: 46..80
score: 1.1
NoneNo IPR availablePANTHERPTHR33098:SF6SUBFAMILY NOT NAMEDcoord: 46..80
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G008480Cla015378Watermelon (97103) v1cmawmB328
CmaCh17G008480Csa7G433160Cucumber (Chinese Long) v2cmacuB388
CmaCh17G008480MELO3C023407Melon (DHL92) v3.5.1cmameB326
CmaCh17G008480ClCG09G002780Watermelon (Charleston Gray)cmawcgB306
CmaCh17G008480CSPI07G20730Wild cucumber (PI 183967)cmacpiB392
CmaCh17G008480CmoCh17G008210Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G008480Lsi02G027230Bottle gourd (USVL1VR-Ls)cmalsiB348
CmaCh17G008480MELO3C023407.2Melon (DHL92) v3.6.1cmamedB379
CmaCh17G008480CsaV3_7G032550Cucumber (Chinese Long) v3cmacucB0462
CmaCh17G008480Cla97C09G164930Watermelon (97103) v2cmawmbB387
CmaCh17G008480Bhi09G000033Wax gourdcmawgoB0492
CmaCh17G008480CsGy7G018980Cucumber (Gy14) v2cgybcmaB925
CmaCh17G008480Carg09576Silver-seed gourdcarcmaB1419
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G008480Silver-seed gourdcarcmaB0192
CmaCh17G008480Silver-seed gourdcarcmaB0277
CmaCh17G008480Silver-seed gourdcarcmaB0799
CmaCh17G008480Cucumber (Chinese Long) v3cmacucB0423
CmaCh17G008480Watermelon (97103) v2cmawmbB362
CmaCh17G008480Watermelon (97103) v2cmawmbB382
CmaCh17G008480Cucurbita maxima (Rimu)cmacmaB098
CmaCh17G008480Cucurbita maxima (Rimu)cmacmaB175
CmaCh17G008480Cucurbita maxima (Rimu)cmacmaB360
CmaCh17G008480Cucurbita maxima (Rimu)cmacmaB368
CmaCh17G008480Cucurbita maxima (Rimu)cmacmaB380
CmaCh17G008480Cucumber (Gy14) v1cgycmaB0237
CmaCh17G008480Cucurbita moschata (Rifu)cmacmoB355
CmaCh17G008480Cucurbita moschata (Rifu)cmacmoB361
CmaCh17G008480Cucurbita moschata (Rifu)cmacmoB367
CmaCh17G008480Watermelon (Charleston Gray)cmawcgB332
CmaCh17G008480Watermelon (97103) v1cmawmB339
CmaCh17G008480Cucurbita pepo (Zucchini)cmacpeB399
CmaCh17G008480Cucurbita pepo (Zucchini)cmacpeB369
CmaCh17G008480Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G008480Cucurbita pepo (Zucchini)cmacpeB376
CmaCh17G008480Cucurbita pepo (Zucchini)cmacpeB391
CmaCh17G008480Cucurbita pepo (Zucchini)cmacpeB396
CmaCh17G008480Bottle gourd (USVL1VR-Ls)cmalsiB343
CmaCh17G008480Cucumber (Gy14) v2cgybcmaB196