CmaCh17G008210 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAGCTGCAAGGCAAAACTGGGTTTAATGGCGTGGCTGGTGCTGAGCTCATTAACGACGGCGAATTCCACCTCATTTCAAGAATGCTACGCCACCTGCTTCCTCATATGCGCCATCACGCCCGGCGTCGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCCTGCATTATCCCATCTTTTCCTATCCACAACGCCGCCGCCGACGACGTCCACCGGCAACAAAAAAACCAGTTCTTTTGCGAGCTCGGCTGCGCCGCCTCCTCGTGTACCAAGTTCAGCACCCAGAAAAACCCAGGTTCTAAACATTAATAATTTGAACTTTTTGTTTCTAAATTTTATGAAAATATATTGAAGTGTTGTTGGTTTTGTTGATGCAGCTGAAAAGAAAGTGGGAAGCTGCGTGGATTCGTGCTCTCGGACATGCTCCATGGATTGATCTTAGCCGTTCAACTACTAGTTCGAATTTCTTTCGGTTCCGTACTACTTGTTGATTTGATATTGTCTATTTTAAACCTAAATTTTAATGACTAATCAAGATGTGTTCCACGTTGATTAATTTAGTAGAAGATGATGAGTTTACAAGTGAGGAATATTATCCCTATTGGTAGAGGTTTTTTGGGAAGCCCAAAGCACTAAAGTGTCGAACAAAGACTTTGTTCGAAGGCTCCAGAGAAAGGAGTCGAGCCTTGATTAAGGGGAAGCTATTCGAGAGCTCCATAAACCTCAAGGGAGACTTCTAGTAGTATACTTTGTTCGAGAGTAGGTCGTGCTAATATTAAATAAATTGTTAATATGTTAGAGAGGGTCACGGGATGGCATTATTATTATTATTTGATTGAACATAATTTTGGCTATATATGGCCCGTGAACTTTGTTTGTCTAAAACCACGCATCATTATTTGAGGACACCCATTTTCAAGCCATGCTTAGATCTAACACCTAATTATATCCCTTAATTAATTGGTTAACTAAGTTTACTTATTACTCAACTGTGTTTATGTTGGTAGATATGACGCAATATCTAATAAATAAGAAAACTCGA ATGGAGAGCTGCAAGGCAAAACTGGGTTTAATGGCGTGGCTGGTGCTGAGCTCATTAACGACGGCGAATTCCACCTCATTTCAAGAATGCTACGCCACCTGCTTCCTCATATGCGCCATCACGCCCGGCGTCGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCCTGCATTATCCCATCTTTTCCTATCCACAACGCCGCCGCCGACGACGTCCACCGGCAACAAAAAAACCAGTTCTTTTGCGAGCTCGGCTGCGCCGCCTCCTCGTGTACCAAGTTCAGCACCCAGAAAAACCCAGCTGAAAAGAAAGTGGGAAGCTGCGTGGATTCGTGCTCTCGGACATGCTCCATGGATTGATCTTAGCCGTTCAACTACTAGTTCGAATTTCTTTCGGTTCCGTACTACTTGTTGATTTGATATTGTCTATTTTAAACCTAAATTTTAATGACTAATCAAGATGTGTTCCACGTTGATTAATTTAGTAGAAGATGATGAGTTTACAAGTGAGGAATATTATCCCTATTGGTAGAGGTTTTTTGGGAAGCCCAAAGCACTAAAGTGTCGAACAAAGACTTTGTTCGAAGGCTCCAGAGAAAGGAGTCGAGCCTTGATTAAGGGGAAGCTATTCGAGAGCTCCATAAACCTCAAGGGAGACTTCTAGTAGTATACTTTGTTCGAGAGTAGGTCGTGCTAATATTAAATAAATTGTTAATATGTTAGAGAGGGTCACGGGATGGCATTATTATTATTATTTGATTGAACATAATTTTGGCTATATATGGCCCGTGAACTTTGTTTGTCTAAAACCACGCATCATTATTTGAGGACACCCATTTTCAAGCCATGCTTAGATCTAACACCTAATTATATCCCTTAATTAATTGGTTAACTAAGTTTACTTATTACTCAACTGTGTTTATGTTGGTAGATATGACGCAATATCTAATAAATAAGAAAACTCGA ATGGAGAGCTGCAAGGCAAAACTGGGTTTAATGGCGTGGCTGGTGCTGAGCTCATTAACGACGGCGAATTCCACCTCATTTCAAGAATGCTACGCCACCTGCTTCCTCATATGCGCCATCACGCCCGGCGTCGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCCTGCATTATCCCATCTTTTCCTATCCACAACGCCGCCGCCGACGACGTCCACCGGCAACAAAAAAACCAGTTCTTTTGCGAGCTCGGCTGCGCCGCCTCCTCGTGTACCAAGTTCAGCACCCAGAAAAACCCAGCTGAAAAGAAAGTGGGAAGCTGCGTGGATTCGTGCTCTCGGACATGCTCCATGGATTGA MESCKAKLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHNAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCSMD
BLAST of CmaCh17G008210 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 3.0e-09 Identity = 35/114 (30.70%), Postives = 62/114 (54.39%), Query Frame = 1
BLAST of CmaCh17G008210 vs. TrEMBL
Match: A0A0A0K781_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 4.0e-45 Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 1
BLAST of CmaCh17G008210 vs. TrEMBL
Match: A0A061GH02_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_027831 PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20 Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1
BLAST of CmaCh17G008210 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19 Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1
BLAST of CmaCh17G008210 vs. TrEMBL
Match: B9SQB8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0980260 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 2.9e-19 Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = 1
BLAST of CmaCh17G008210 vs. TrEMBL
Match: V4ST32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 3.8e-19 Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 1
BLAST of CmaCh17G008210 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.) HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10 Identity = 35/114 (30.70%), Postives = 62/114 (54.39%), Query Frame = 1
BLAST of CmaCh17G008210 vs. TAIR10
Match: AT1G12672.2 (AT1G12672.2 unknown protein) HSP 1 Score: 51.6 bits (122), Expect = 3.9e-07 Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 1
BLAST of CmaCh17G008210 vs. NCBI nr
Match: gi|778729254|ref|XP_011659556.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus]) HSP 1 Score: 188.7 bits (478), Expect = 5.7e-45 Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 1
BLAST of CmaCh17G008210 vs. NCBI nr
Match: gi|659122243|ref|XP_008461039.1| (PREDICTED: thionin-like protein 2 [Cucumis melo]) HSP 1 Score: 185.3 bits (469), Expect = 6.4e-44 Identity = 90/114 (78.95%), Postives = 102/114 (89.47%), Query Frame = 1
BLAST of CmaCh17G008210 vs. NCBI nr
Match: gi|590617165|ref|XP_007023712.1| (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao]) HSP 1 Score: 106.7 bits (265), Expect = 2.9e-20 Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1
BLAST of CmaCh17G008210 vs. NCBI nr
Match: gi|657943097|ref|XP_008353739.1| (PREDICTED: thionin-like protein 2 [Malus domestica]) HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19 Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 1
BLAST of CmaCh17G008210 vs. NCBI nr
Match: gi|590618512|ref|XP_007024067.1| (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao]) HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19 Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |