CmaCh17G008210 (gene) Cucurbita maxima (Rimu)

NameCmaCh17G008210
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTo encode a PR protein, Belongs to the plant thionin family with the following members:, putative
LocationCma_Chr17 : 6444625 .. 6445672 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCTGCAAGGCAAAACTGGGTTTAATGGCGTGGCTGGTGCTGAGCTCATTAACGACGGCGAATTCCACCTCATTTCAAGAATGCTACGCCACCTGCTTCCTCATATGCGCCATCACGCCCGGCGTCGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCCTGCATTATCCCATCTTTTCCTATCCACAACGCCGCCGCCGACGACGTCCACCGGCAACAAAAAAACCAGTTCTTTTGCGAGCTCGGCTGCGCCGCCTCCTCGTGTACCAAGTTCAGCACCCAGAAAAACCCAGGTTCTAAACATTAATAATTTGAACTTTTTGTTTCTAAATTTTATGAAAATATATTGAAGTGTTGTTGGTTTTGTTGATGCAGCTGAAAAGAAAGTGGGAAGCTGCGTGGATTCGTGCTCTCGGACATGCTCCATGGATTGATCTTAGCCGTTCAACTACTAGTTCGAATTTCTTTCGGTTCCGTACTACTTGTTGATTTGATATTGTCTATTTTAAACCTAAATTTTAATGACTAATCAAGATGTGTTCCACGTTGATTAATTTAGTAGAAGATGATGAGTTTACAAGTGAGGAATATTATCCCTATTGGTAGAGGTTTTTTGGGAAGCCCAAAGCACTAAAGTGTCGAACAAAGACTTTGTTCGAAGGCTCCAGAGAAAGGAGTCGAGCCTTGATTAAGGGGAAGCTATTCGAGAGCTCCATAAACCTCAAGGGAGACTTCTAGTAGTATACTTTGTTCGAGAGTAGGTCGTGCTAATATTAAATAAATTGTTAATATGTTAGAGAGGGTCACGGGATGGCATTATTATTATTATTTGATTGAACATAATTTTGGCTATATATGGCCCGTGAACTTTGTTTGTCTAAAACCACGCATCATTATTTGAGGACACCCATTTTCAAGCCATGCTTAGATCTAACACCTAATTATATCCCTTAATTAATTGGTTAACTAAGTTTACTTATTACTCAACTGTGTTTATGTTGGTAGATATGACGCAATATCTAATAAATAAGAAAACTCGA

mRNA sequence

ATGGAGAGCTGCAAGGCAAAACTGGGTTTAATGGCGTGGCTGGTGCTGAGCTCATTAACGACGGCGAATTCCACCTCATTTCAAGAATGCTACGCCACCTGCTTCCTCATATGCGCCATCACGCCCGGCGTCGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCCTGCATTATCCCATCTTTTCCTATCCACAACGCCGCCGCCGACGACGTCCACCGGCAACAAAAAAACCAGTTCTTTTGCGAGCTCGGCTGCGCCGCCTCCTCGTGTACCAAGTTCAGCACCCAGAAAAACCCAGCTGAAAAGAAAGTGGGAAGCTGCGTGGATTCGTGCTCTCGGACATGCTCCATGGATTGATCTTAGCCGTTCAACTACTAGTTCGAATTTCTTTCGGTTCCGTACTACTTGTTGATTTGATATTGTCTATTTTAAACCTAAATTTTAATGACTAATCAAGATGTGTTCCACGTTGATTAATTTAGTAGAAGATGATGAGTTTACAAGTGAGGAATATTATCCCTATTGGTAGAGGTTTTTTGGGAAGCCCAAAGCACTAAAGTGTCGAACAAAGACTTTGTTCGAAGGCTCCAGAGAAAGGAGTCGAGCCTTGATTAAGGGGAAGCTATTCGAGAGCTCCATAAACCTCAAGGGAGACTTCTAGTAGTATACTTTGTTCGAGAGTAGGTCGTGCTAATATTAAATAAATTGTTAATATGTTAGAGAGGGTCACGGGATGGCATTATTATTATTATTTGATTGAACATAATTTTGGCTATATATGGCCCGTGAACTTTGTTTGTCTAAAACCACGCATCATTATTTGAGGACACCCATTTTCAAGCCATGCTTAGATCTAACACCTAATTATATCCCTTAATTAATTGGTTAACTAAGTTTACTTATTACTCAACTGTGTTTATGTTGGTAGATATGACGCAATATCTAATAAATAAGAAAACTCGA

Coding sequence (CDS)

ATGGAGAGCTGCAAGGCAAAACTGGGTTTAATGGCGTGGCTGGTGCTGAGCTCATTAACGACGGCGAATTCCACCTCATTTCAAGAATGCTACGCCACCTGCTTCCTCATATGCGCCATCACGCCCGGCGTCGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCCTGCATTATCCCATCTTTTCCTATCCACAACGCCGCCGCCGACGACGTCCACCGGCAACAAAAAAACCAGTTCTTTTGCGAGCTCGGCTGCGCCGCCTCCTCGTGTACCAAGTTCAGCACCCAGAAAAACCCAGCTGAAAAGAAAGTGGGAAGCTGCGTGGATTCGTGCTCTCGGACATGCTCCATGGATTGA

Protein sequence

MESCKAKLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHNAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCSMD
BLAST of CmaCh17G008210 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-09
Identity = 35/114 (30.70%), Postives = 62/114 (54.39%), Query Frame = 1

Query: 8   LGLMAWLVLSSL---TTANSTSFQECYATCFLIC-AITPGVAFSDCPLRCLQACIIPSFP 67
           + +M  +V+ +L   T A    F+ECY  C + C A +    +  CP  C + C+    P
Sbjct: 3   VAVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSP 62

Query: 68  IHNAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCS 118
             + +++++    ++ +FC+LGCA   C   S+ +NP  ++V +CVDSCS  C+
Sbjct: 63  -PSVSSNNI---DESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCT 112

BLAST of CmaCh17G008210 vs. TrEMBL
Match: A0A0A0K781_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.0e-45
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 1

Query: 7   KLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHN 66
           K  LMAWL+L+SL+TANSTSFQECYATCF+ICAITPGVAFSDCPLRCLQACI+PSFPI +
Sbjct: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67

Query: 67  AAADDVHR-QQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCSMD 120
             AD VHR QQ+N FFC+LGCAASSCTKFST++NP E+KVG CVDSCS+TCSM+
Sbjct: 68  --ADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 119

BLAST of CmaCh17G008210 vs. TrEMBL
Match: A0A061GH02_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_027831 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1

Query: 10  LMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHNAAA 69
           LM +LVL  L   ++ SFQ CY  CF+ C ITP      C ++CL+ CIIPSF   +   
Sbjct: 10  LMVYLVLGLLVGQSTASFQTCYMGCFIWCVITPNNTVFSCSVKCLKDCIIPSFSFPSG-- 69

Query: 70  DDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCS 118
                 +  Q+FC+LGCA S CT  S+++NP E+KVGSCVDSCS TC+
Sbjct: 70  ------KDTQYFCKLGCATSLCTDLSSKENPGEEKVGSCVDSCSETCA 109

BLAST of CmaCh17G008210 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1

Query: 10  LMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHNAAA 69
           +M  LVL  L   ++ SFQ+CYA CFL+C   P      C ++CL  CIIPS  + +   
Sbjct: 49  MMVCLVLGLLVGQSTASFQKCYAGCFLLCVFIPPNPVFSCAIKCLNECIIPSSTLESG-- 108

Query: 70  DDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCS 118
                 +  Q+FC+LGCA S CT  S+++NP E+KVGSCVDSCS TC+
Sbjct: 109 ------KDTQYFCKLGCATSLCTDLSSKENPGEQKVGSCVDSCSETCA 148

BLAST of CmaCh17G008210 vs. TrEMBL
Match: B9SQB8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0980260 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-19
Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = 1

Query: 1   MESCKAKLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIP 60
           ME  +AK  ++  LV S L   +  +F ECY  CFLIC I  G     C  +CL+ CI+P
Sbjct: 1   MEERRAKAFMVVLLVFSLLVGQSYAAFSECYKECFLICLIISGGCLDSCAFKCLKDCILP 60

Query: 61  SFPIHNAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCS 118
             P  +++ DD   +Q+   FC+LGCA+S CT  S++ +P EKKVGSCVDSCS  C+
Sbjct: 61  -LPATSSSLDD---KQQIHDFCKLGCASSLCTNLSSKNDPGEKKVGSCVDSCSNRCT 113

BLAST of CmaCh17G008210 vs. TrEMBL
Match: V4ST32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-19
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 1

Query: 1   MESCKAKLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIP 60
           ME  K    LM +L+   L   +  +F+ECY TCF+IC ITPG     C  +CL+ CI P
Sbjct: 1   MEKRKVGSLLMVYLMTGLLVGQSQAAFKECYETCFIICYITPGTTLGSCAAKCLKDCIFP 60

Query: 61  SFPIHNAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCSMD 120
              +H  +  D       ++FC+LGCA S CT  S++ NPA +KV  CV+SCS++CS D
Sbjct: 61  P-KLHTLSLQDT------EYFCKLGCATSLCTNLSSKDNPAGEKVEGCVNSCSKSCSKD 112

BLAST of CmaCh17G008210 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 35/114 (30.70%), Postives = 62/114 (54.39%), Query Frame = 1

Query: 8   LGLMAWLVLSSL---TTANSTSFQECYATCFLIC-AITPGVAFSDCPLRCLQACIIPSFP 67
           + +M  +V+ +L   T A    F+ECY  C + C A +    +  CP  C + C+    P
Sbjct: 3   VAVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSP 62

Query: 68  IHNAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCS 118
             + +++++    ++ +FC+LGCA   C   S+ +NP  ++V +CVDSCS  C+
Sbjct: 63  -PSVSSNNI---DESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCT 112

BLAST of CmaCh17G008210 vs. TAIR10
Match: AT1G12672.2 (AT1G12672.2 unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.9e-07
Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 1

Query: 53  CLQACIIPSFPIHNAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSC 112
           C++ C+ P     ++  D  +    N ++C+LGC+   C   S+ +NP   KV  CVDSC
Sbjct: 41  CIKTCLEPP----SSQMDSTNEINHNDYYCKLGCSTHHCASLSSIQNPNVDKVVDCVDSC 100

Query: 113 SRTCS 118
           S  CS
Sbjct: 101 SDKCS 101

BLAST of CmaCh17G008210 vs. NCBI nr
Match: gi|778729254|ref|XP_011659556.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 5.7e-45
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 1

Query: 7   KLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHN 66
           K  LMAWL+L+SL+TANSTSFQECYATCF+ICAITPGVAFSDCPLRCLQACI+PSFPI +
Sbjct: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67

Query: 67  AAADDVHR-QQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCSMD 120
             AD VHR QQ+N FFC+LGCAASSCTKFST++NP E+KVG CVDSCS+TCSM+
Sbjct: 68  --ADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 119

BLAST of CmaCh17G008210 vs. NCBI nr
Match: gi|659122243|ref|XP_008461039.1| (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 6.4e-44
Identity = 90/114 (78.95%), Postives = 102/114 (89.47%), Query Frame = 1

Query: 7   KLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHN 66
           K  LMAWL+L+SL+TANSTSFQECYATCF+ICAITPGVAFSDCPLRCLQACI+PSFPI +
Sbjct: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67

Query: 67  AAADDVHRQ-QKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCSMD 120
              D VHRQ Q+N FFC+LGCAASSCTKFST++NP E+KV  CVDSCS+TCSMD
Sbjct: 68  --DDVVHRQKQQNHFFCKLGCAASSCTKFSTKQNPGERKVERCVDSCSQTCSMD 119

BLAST of CmaCh17G008210 vs. NCBI nr
Match: gi|590617165|ref|XP_007023712.1| (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao])

HSP 1 Score: 106.7 bits (265), Expect = 2.9e-20
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1

Query: 10  LMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHNAAA 69
           LM +LVL  L   ++ SFQ CY  CF+ C ITP      C ++CL+ CIIPSF   +   
Sbjct: 10  LMVYLVLGLLVGQSTASFQTCYMGCFIWCVITPNNTVFSCSVKCLKDCIIPSFSFPSG-- 69

Query: 70  DDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCS 118
                 +  Q+FC+LGCA S CT  S+++NP E+KVGSCVDSCS TC+
Sbjct: 70  ------KDTQYFCKLGCATSLCTDLSSKENPGEEKVGSCVDSCSETCA 109

BLAST of CmaCh17G008210 vs. NCBI nr
Match: gi|657943097|ref|XP_008353739.1| (PREDICTED: thionin-like protein 2 [Malus domestica])

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 1

Query: 11  MAWLVLSSLTTA--NSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHNAA 70
           +A+LVL  L  A  +S SF+ CY +CF++C ITP  + S C  +CL+ CIIPS     + 
Sbjct: 11  VAYLVLGMLMLAGQSSASFKSCYESCFILCVITPNHSVSYCSFQCLKDCIIPS----RSP 70

Query: 71  ADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCSM 119
            D  +  + N +FC+LGCA+S C+  ST++NP  +KVG CVDSCS+TC++
Sbjct: 71  FDHSNIHKDNVYFCKLGCASSLCSNLSTKQNPEVEKVGGCVDSCSKTCTI 116

BLAST of CmaCh17G008210 vs. NCBI nr
Match: gi|590618512|ref|XP_007024067.1| (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao])

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1

Query: 10  LMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHNAAA 69
           +M  LVL  L   ++ SFQ+CYA CFL+C   P      C ++CL  CIIPS  + +   
Sbjct: 49  MMVCLVLGLLVGQSTASFQKCYAGCFLLCVFIPPNPVFSCAIKCLNECIIPSSTLESG-- 108

Query: 70  DDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCS 118
                 +  Q+FC+LGCA S CT  S+++NP E+KVGSCVDSCS TC+
Sbjct: 109 ------KDTQYFCKLGCATSLCTDLSSKENPGEQKVGSCVDSCSETCA 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
THNL2_ARATH3.0e-0930.70Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K781_CUCSA4.0e-4579.82Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1[more]
A0A061GH02_THECC2.0e-2048.15To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
A0A061GI20_THECC1.7e-1946.30To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
B9SQB8_RICCO2.9e-1945.30Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0980260 PE=4 SV=1[more]
V4ST32_9ROSI3.8e-1942.86Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G12663.11.7e-1030.70 Predicted to encode a PR (pathogenesis-related) protein. Belongs to... [more]
AT1G12672.23.9e-0735.38 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778729254|ref|XP_011659556.1|5.7e-4579.82PREDICTED: thionin-like protein 2 [Cucumis sativus][more]
gi|659122243|ref|XP_008461039.1|6.4e-4478.95PREDICTED: thionin-like protein 2 [Cucumis melo][more]
gi|590617165|ref|XP_007023712.1|2.9e-2048.15To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
gi|657943097|ref|XP_008353739.1|2.4e-1946.36PREDICTED: thionin-like protein 2 [Malus domestica][more]
gi|590618512|ref|XP_007024067.1|2.4e-1946.30To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G008210.1CmaCh17G008210.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36312FAMILY NOT NAMEDcoord: 1..118
score: 1.1
NoneNo IPR availablePANTHERPTHR36312:SF1PLANT THIONIN FAMILY PROTEIN-RELATEDcoord: 1..118
score: 1.1

The following gene(s) are paralogous to this gene:

None