CmaCh17G007080 (gene) Cucurbita maxima (Rimu)

NameCmaCh17G007080
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 5860106 .. 5861616 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTCATCTTCTGCAACTTCAAATCGGCTCTGAATCTTGCAATGAACTTATCGGCTTTACTGTTGACATCAGGGCTGGAACAGAACATCGGAATTGTCGAGTCTTTCACGAGTTTTCTTTCGCCGGCCGCCGGTTGTCCATCGGCTTCACTCTCGCCCATGTCCGGCACGGCTCTTGGTGTACTACTGTTGCTTCCTACACTGTCAAAGTCTCCATGCATTCTGAACAGCGGCGGCGGCGGTGGAGGAGGAGGAATCGGATGGAATGGAGACTCACCGCCAATGCGCGTACTGTACTCTTCGCCATTTAAACTGCTCAGTCTCACGAGCTCCACTGGAGGAGGCTCGTGAGGCTTGCGGAGATGATTTTGATCTTCGATACTTGGTTTAGGTTCTGATGAGGCTATGGATGGTGGCGACTCCGGTGAAGGTGTGGATTGTACTTTTTTGCCTTTTCCTTTCTTGGATGTAAATAGAACTTGCAAAACTGACGGCGAAGGAAGCAGCGGAGGAGGCGGTGGTGACGGCGGTGGTAATGACGATGTTGAAGGGCGTTGGGAGGCGACGATAGCCTCGAAGCTTTCGATGCTTTTTTGTCTCTGCTTCTTCCTCCTCCTCCGCAGTGCGGACCAAATTTCTTTTGGAGCGCCACCTCTCTTCTTATCGTTTTTAACGCTCTTCTGCTCCGATTCCCGATAGAACAACGGCGGTGAGAGTGGAGGAAGCGGAATCCGTTGAAATTCCGCGACGTCCGAATCGCCATTTTTGTTGTGCTGGTCAATCTCTACAGCAGGCGTATGGCTGTGGACCTTATGCGTTCTCTTTGGCCTTCGTTTTACCACTTTAGGTGTCGTATGAGCGGGAGGCGGAGGGGTTGGAGGCGGTGATGGTGATCGCGGAGGAGACACCAGTGGCGGCGGCGACCGCGGCGGAGAAGGTATTGGCAGTTGTGAATATACATCTTCACGAATCTCAGATCTGTCGAAACCAATACTTTTGACATCAGAATCTTCGCGTTCAAGCTCCGGCCGAGCTTCACGACGGCGATGAAGCTGATCGGAGGACGGAAACCGATTATTAGGCACGTGAGTATCGTCGTAAGATCGCCACCGTTGATCACCAGCATCCAATGAAGACTCCTGCAGACATAGATCAGGATAGGAACTGCTGCTCCTCATCCGATTGACAGTGTAACGAATCGGCCGATGATCGGCATATCCATCCCATTGGCGCGGAGTCCTAGGGTTTGACTTGATTGTCCGCCTCGAAGAAACGCTCCGATCTTCAAGAGAGTCTCTAGTATCATCACCAGCGTTTCTGCTAAGAAACCCGCAAACAATGGCGAAGAGGACAAGAACCAAATTGAGCGAATCCCAGCTCTTCTTTACCGATTGAGGCCGTATCAATTGAGAACCGAACTGCACAAATTTGGGAATCACAATCCATATGAAACAGAGAACTATTACCAACAAAACAACGAGAAAGGCGCTGGAGTTAAGGAGGAATGA

mRNA sequence

ATGGAATTCATCTTCTGCAACTTCAAATCGGCTCTGAATCTTGCAATGAACTTATCGGCTTTACTGTTGACATCAGGGCTGGAACAGAACATCGGAATTGTCGAGTCTTTCACGAGTTTTCTTTCGCCGGCCGCCGGTTGTCCATCGGCTTCACTCTCGCCCATGTCCGGCACGGCTCTTGGTGTACTACTGTTGCTTCCTACACTGTCAAAGTCTCCATGCATTCTGAACAGCGGCGGCGGCGGTGGAGGAGGAGGAATCGGATGGAATGGAGACTCACCGCCAATGCGCGTACTGTACTCTTCGCCATTTAAACTGCTCAGTTCTGATGAGGCTATGGATGGTGGCGACTCCGGTGAAGGTGTGGATTGTACTTTTTTGCCTTTTCCTTTCTTGGATGTAAATAGAACTTGCAAAACTGACGGCGAAGGAAGCAGCGGAGGAGGCGGTGGTGACGGCGGTGGTAATGACGATGTTGAAGGGCGTTGGGAGGCGACGATAGCCTCGAAGCTTTCGATGCTTTTTTGTCTCTGCTTCTTCCTCCTCCTCCGCAGTGCGGACCAAATTTCTTTTGGAGCGCCACCTCTCTTCTTATCAACAACGGCGGTGAGAGTGGAGGAAGCGGAATCCGTTGAAATTCCGCGACGTCCGAATCGCCATTTTTGTTGTGCTGGTCAATCTCTACAGCAGGCGTATGGCTGTGGACCTTATGCGTTCTCTTTGGCCTTCGTGTCGTATGAGCGGGAGGCGGAGGGGTTGGAGGCGGTGATGGTGATCGCGGAGGAGACACCAGTGGCGGCGGCGACCGCGGCGGAGAAGCTCCGGCCGAGCTTCACGACGGCGATGAAGCTGATCGGAGGACGGAAACCGATTATTAGGCACATCAGGATAGGAACTGCTGCTCCTCATCCGATTGACAGTGTAACGAATCGGCCGATGATCGGCATATCCATCCCATTGGCGCGGAGTCCTAGGAGAGTCTCTAGTATCATCACCAGCGTTTCTGCTAAGAAACCCGCAAACAATGGCGAAGAGGACAAGAACCAAATTGAGCGAATCCCAGCTCTTCTTTACCGATTGAGGCCGTATCAATTGAGAACCGAACTGCACAAATTTGGGAATCACAATCCATATGAAACAGAGAACTATTACCAACAAAACAACGAGAAAGGCGCTGGAGTTAAGGAGGAATGA

Coding sequence (CDS)

ATGGAATTCATCTTCTGCAACTTCAAATCGGCTCTGAATCTTGCAATGAACTTATCGGCTTTACTGTTGACATCAGGGCTGGAACAGAACATCGGAATTGTCGAGTCTTTCACGAGTTTTCTTTCGCCGGCCGCCGGTTGTCCATCGGCTTCACTCTCGCCCATGTCCGGCACGGCTCTTGGTGTACTACTGTTGCTTCCTACACTGTCAAAGTCTCCATGCATTCTGAACAGCGGCGGCGGCGGTGGAGGAGGAGGAATCGGATGGAATGGAGACTCACCGCCAATGCGCGTACTGTACTCTTCGCCATTTAAACTGCTCAGTTCTGATGAGGCTATGGATGGTGGCGACTCCGGTGAAGGTGTGGATTGTACTTTTTTGCCTTTTCCTTTCTTGGATGTAAATAGAACTTGCAAAACTGACGGCGAAGGAAGCAGCGGAGGAGGCGGTGGTGACGGCGGTGGTAATGACGATGTTGAAGGGCGTTGGGAGGCGACGATAGCCTCGAAGCTTTCGATGCTTTTTTGTCTCTGCTTCTTCCTCCTCCTCCGCAGTGCGGACCAAATTTCTTTTGGAGCGCCACCTCTCTTCTTATCAACAACGGCGGTGAGAGTGGAGGAAGCGGAATCCGTTGAAATTCCGCGACGTCCGAATCGCCATTTTTGTTGTGCTGGTCAATCTCTACAGCAGGCGTATGGCTGTGGACCTTATGCGTTCTCTTTGGCCTTCGTGTCGTATGAGCGGGAGGCGGAGGGGTTGGAGGCGGTGATGGTGATCGCGGAGGAGACACCAGTGGCGGCGGCGACCGCGGCGGAGAAGCTCCGGCCGAGCTTCACGACGGCGATGAAGCTGATCGGAGGACGGAAACCGATTATTAGGCACATCAGGATAGGAACTGCTGCTCCTCATCCGATTGACAGTGTAACGAATCGGCCGATGATCGGCATATCCATCCCATTGGCGCGGAGTCCTAGGAGAGTCTCTAGTATCATCACCAGCGTTTCTGCTAAGAAACCCGCAAACAATGGCGAAGAGGACAAGAACCAAATTGAGCGAATCCCAGCTCTTCTTTACCGATTGAGGCCGTATCAATTGAGAACCGAACTGCACAAATTTGGGAATCACAATCCATATGAAACAGAGAACTATTACCAACAAAACAACGAGAAAGGCGCTGGAGTTAAGGAGGAATGA

Protein sequence

MEFIFCNFKSALNLAMNLSALLLTSGLEQNIGIVESFTSFLSPAAGCPSASLSPMSGTALGVLLLLPTLSKSPCILNSGGGGGGGGIGWNGDSPPMRVLYSSPFKLLSSDEAMDGGDSGEGVDCTFLPFPFLDVNRTCKTDGEGSSGGGGGDGGGNDDVEGRWEATIASKLSMLFCLCFFLLLRSADQISFGAPPLFLSTTAVRVEEAESVEIPRRPNRHFCCAGQSLQQAYGCGPYAFSLAFVSYEREAEGLEAVMVIAEETPVAAATAAEKLRPSFTTAMKLIGGRKPIIRHIRIGTAAPHPIDSVTNRPMIGISIPLARSPRRVSSIITSVSAKKPANNGEEDKNQIERIPALLYRLRPYQLRTELHKFGNHNPYETENYYQQNNEKGAGVKEE
BLAST of CmaCh17G007080 vs. TrEMBL
Match: A0A0A0K7V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G450665 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.2e-38
Identity = 94/117 (80.34%), Postives = 99/117 (84.62%), Query Frame = 1

Query: 1   MEFIFCNFKSALNLAMNLSALLLTSGLEQNIGIVESFTSFLSPAAGCPSASLSPMSG-TA 60
           MEFIFCNFKSALNLAMN+SALLLTSGLEQNIGIV SFTSFLS  AG P ASLS +SG  A
Sbjct: 36  MEFIFCNFKSALNLAMNVSALLLTSGLEQNIGIVGSFTSFLSLVAGGPLASLSSISGEMA 95

Query: 61  LGVLLLLPTLSKSPCILN-SGGGGGGGGIGWNGDSPPMRVLYSSPFKLLSSDEAMDG 116
           LGVLLLLP LSKSPCILN  GGGGGGGGIGW GDSPPM VLYSS FKLL+   ++ G
Sbjct: 96  LGVLLLLPALSKSPCILNGGGGGGGGGGIGWYGDSPPMLVLYSSSFKLLNLSSSIGG 152

BLAST of CmaCh17G007080 vs. NCBI nr
Match: gi|700190275|gb|KGN45508.1| (hypothetical protein Csa_7G450665 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 4.6e-38
Identity = 94/117 (80.34%), Postives = 99/117 (84.62%), Query Frame = 1

Query: 1   MEFIFCNFKSALNLAMNLSALLLTSGLEQNIGIVESFTSFLSPAAGCPSASLSPMSG-TA 60
           MEFIFCNFKSALNLAMN+SALLLTSGLEQNIGIV SFTSFLS  AG P ASLS +SG  A
Sbjct: 36  MEFIFCNFKSALNLAMNVSALLLTSGLEQNIGIVGSFTSFLSLVAGGPLASLSSISGEMA 95

Query: 61  LGVLLLLPTLSKSPCILN-SGGGGGGGGIGWNGDSPPMRVLYSSPFKLLSSDEAMDG 116
           LGVLLLLP LSKSPCILN  GGGGGGGGIGW GDSPPM VLYSS FKLL+   ++ G
Sbjct: 96  LGVLLLLPALSKSPCILNGGGGGGGGGGIGWYGDSPPMLVLYSSSFKLLNLSSSIGG 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7V2_CUCSA3.2e-3880.34Uncharacterized protein OS=Cucumis sativus GN=Csa_7G450665 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700190275|gb|KGN45508.1|4.6e-3880.34hypothetical protein Csa_7G450665 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G007080.1CmaCh17G007080.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G007080Lsi02G029160Bottle gourd (USVL1VR-Ls)cmalsiB345
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G007080Wax gourdcmawgoB0488
CmaCh17G007080Wax gourdcmawgoB0499
CmaCh17G007080Cucurbita maxima (Rimu)cmacmaB096
CmaCh17G007080Cucurbita maxima (Rimu)cmacmaB136
CmaCh17G007080Cucurbita maxima (Rimu)cmacmaB245
CmaCh17G007080Cucurbita maxima (Rimu)cmacmaB360
CmaCh17G007080Cucurbita maxima (Rimu)cmacmaB383
CmaCh17G007080Cucumber (Gy14) v1cgycmaB0933
CmaCh17G007080Cucumber (Gy14) v1cgycmaB0983
CmaCh17G007080Cucurbita moschata (Rifu)cmacmoB346
CmaCh17G007080Cucurbita moschata (Rifu)cmacmoB348
CmaCh17G007080Cucurbita moschata (Rifu)cmacmoB349
CmaCh17G007080Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G007080Cucurbita moschata (Rifu)cmacmoB355
CmaCh17G007080Cucurbita moschata (Rifu)cmacmoB375
CmaCh17G007080Wild cucumber (PI 183967)cmacpiB353
CmaCh17G007080Wild cucumber (PI 183967)cmacpiB362
CmaCh17G007080Wild cucumber (PI 183967)cmacpiB387
CmaCh17G007080Cucumber (Chinese Long) v2cmacuB358
CmaCh17G007080Cucumber (Chinese Long) v2cmacuB349
CmaCh17G007080Cucumber (Chinese Long) v2cmacuB383
CmaCh17G007080Melon (DHL92) v3.5.1cmameB319
CmaCh17G007080Watermelon (Charleston Gray)cmawcgB308
CmaCh17G007080Watermelon (Charleston Gray)cmawcgB315
CmaCh17G007080Watermelon (Charleston Gray)cmawcgB318
CmaCh17G007080Watermelon (Charleston Gray)cmawcgB332
CmaCh17G007080Watermelon (97103) v1cmawmB330
CmaCh17G007080Watermelon (97103) v1cmawmB338
CmaCh17G007080Watermelon (97103) v1cmawmB339
CmaCh17G007080Watermelon (97103) v1cmawmB350
CmaCh17G007080Cucurbita pepo (Zucchini)cmacpeB399
CmaCh17G007080Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G007080Cucurbita pepo (Zucchini)cmacpeB376
CmaCh17G007080Cucurbita pepo (Zucchini)cmacpeB395
CmaCh17G007080Cucurbita pepo (Zucchini)cmacpeB400
CmaCh17G007080Cucurbita pepo (Zucchini)cmacpeB406
CmaCh17G007080Bottle gourd (USVL1VR-Ls)cmalsiB358
CmaCh17G007080Bottle gourd (USVL1VR-Ls)cmalsiB361
CmaCh17G007080Cucumber (Gy14) v2cgybcmaB347
CmaCh17G007080Cucumber (Gy14) v2cgybcmaB919
CmaCh17G007080Melon (DHL92) v3.6.1cmamedB372
CmaCh17G007080Melon (DHL92) v3.6.1cmamedB383
CmaCh17G007080Silver-seed gourdcarcmaB0122
CmaCh17G007080Silver-seed gourdcarcmaB0155
CmaCh17G007080Silver-seed gourdcarcmaB0840
CmaCh17G007080Silver-seed gourdcarcmaB1228
CmaCh17G007080Silver-seed gourdcarcmaB1419
CmaCh17G007080Cucumber (Chinese Long) v3cmacucB0416
CmaCh17G007080Cucumber (Chinese Long) v3cmacucB0426
CmaCh17G007080Cucumber (Chinese Long) v3cmacucB0456
CmaCh17G007080Watermelon (97103) v2cmawmbB365
CmaCh17G007080Watermelon (97103) v2cmawmbB382
CmaCh17G007080Watermelon (97103) v2cmawmbB389