CmaCh17G005410 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G005410
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 4290398 .. 4291278 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGAAGCATTGTAAAGGCACAAGAAAAAGCATAAAATAAAATAAAAATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGATGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTATGAAAAGTGCGAGAAGGAATGCCTTGAGAAGGGCAATGGTCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGGTATGCTCTCTTCCTTTTTAAATCATTTTATTCTCATCATTTTTATTTTCTCTTAATAATTAATTAATTGATTTTGTTTTTGTATTTGTTTATCAGATAAGCTACACATCAAGGTGAAGAACTAAATAATGGAATGCAAAGCAAAAGAAAGAGGTCCCTTGAGAAGGATCTAAGTTATAATTGTATTCAAGTTAAAGCTTGTAAAGTTTCATGAACCTCATTTCTCCTCAATTTTTATGATGTGGTTTGATATTTTCAATTAATAAAGTTCCTCTTTCATGCATCATTCATGATTTTTTTTAAATAATGTAATAATTAAAAAAAATAAACAATATGATAGTTTTAAAAAAAATAAGTAAATTGTGCATCTGCACGTTTTTGCTAAATTGTGTATTATACTGCTTCTCTATGGTACCAATTGTTGCTTCATTGAGTTATTGAATTTGCTTCATTAATAGCTTTACGATTCGACTTTGATTATTATGCACGGGTACCAAATGGTACCCGTTGTTGCTTTATTGAGTTATTGAATTCGCTTCATTAATAGCTTCACGGACTTTGATCGTTATGGACTGGTACCAAGATCTAGTCCTAGACAGTTAA

mRNA sequence

AAAAAGAAGCATTGTAAAGGCACAAGAAAAAGCATAAAATAAAATAAAAATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGATGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTATGAAAAGTGCGAGAAGGAATGCCTTGAGAAGGGCAATGGTCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGCTTCACGGACTTTGATCGTTATGGACTGGTACCAAGATCTAGTCCTAGACAGTTAA

Coding sequence (CDS)

ATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGATGGCTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTATGAAAAGTGCGAGAAGGAATGCCTTGAGAAGGGCAATGGTCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGGTGAGAAAGAAGCCGCTGCTTCACGGACTTTGATCGTTATGGACTGGTACCAAGATCTAGTCCTAGACAGTTAA

Protein sequence

MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKEAAASRTLIVMDWYQDLVLDS
Homology
[Close]
BLAST of CmaCh17G005410 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.4e-07
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1 

Query: 38 EAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCGEKE 75
          EA+++ CY+ C KEC +KGNG +FCE+KCD DC  K+
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKD 38

[Close]
BLAST of CmaCh17G005410 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1 

Query: 3  KKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQSF 62
          KKM+ VLL+CIVVMAAL+ S      KE KYE+KF+AKY+ CYE CEKECLE G NGQSF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCGEKEAA 77
          CEVKCDEDCGEKE+A
Sbjct: 64 CEVKCDEDCGEKESA 78

[Close]
BLAST of CmaCh17G005410 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-18
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKM+AV L+CIVV+ +LQ ++A +  + A YEAKF+AKY+ C+  CEKEC+E+G+G S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCGEKEAA 77
          +CEVKCDEDCG KEAA
Sbjct: 61 YCEVKCDEDCGAKEAA 76

[Close]
BLAST of CmaCh17G005410 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-18
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+ VLL+CIV+MA L+ S      KE KYE+KF+A+Y+ CYE CEKECL  G NGQ
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCGEKEAA 77
          S+CEVKCDEDC EKE A
Sbjct: 61 SYCEVKCDEDCDEKEVA 77

[Close]
BLAST of CmaCh17G005410 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-18
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MA KMIA+ L+CIVV+AALQ ++A +    AKYEAKF+AKY+ C+E CEKECL  G+GQS
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKE-DVAKYEAKFDAKYKSCFETCEKECLRYGSGQS 60

Query: 61 FCEVKCDEDCGEKEAA 77
          +CEVKCDEDC EKEAA
Sbjct: 61 YCEVKCDEDCDEKEAA 75

[Close]
BLAST of CmaCh17G005410 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.3e-18
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+AV L+CIVV+A LQ   A E     KYEAKF+AKY+ CYE CEKECL    NG+
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCGEKEAA 77
          SFCEVKCDEDC EKEAA
Sbjct: 61 SFCEVKCDEDCSEKEAA 77

[Close]
BLAST of CmaCh17G005410 vs. NCBI nr
Match: gi|700191315|gb|KGN46519.1| (hypothetical protein Csa_6G106710 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1 

Query: 3  KKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQSF 62
          KKM+ VLL+CIVVMAAL+ S      KE KYE+KF+AKY+ CYE CEKECLE G NGQSF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCGEKEAA 77
          CEVKCDEDCGEKE+A
Sbjct: 64 CEVKCDEDCGEKESA 78

[Close]
BLAST of CmaCh17G005410 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-20
Identity = 53/76 (69.74%), Postives = 65/76 (85.53%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKMIA+ L+CIVV+AALQ +SA +  + AKYEAKF+AKY+ C++ CEKECLE G+GQS
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCGEKEAA 77
          +CEVKCDEDC EKE A
Sbjct: 61 YCEVKCDEDCNEKEVA 76

[Close]
BLAST of CmaCh17G005410 vs. NCBI nr
Match: gi|449445523|ref|XP_004140522.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-18
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKM+AV L+CIVV+ +LQ ++A +  + A YEAKF+AKY+ C+  CEKEC+E+G+G S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCGEKEAA 77
          +CEVKCDEDCG KEAA
Sbjct: 61 YCEVKCDEDCGAKEAA 76

[Close]
BLAST of CmaCh17G005410 vs. NCBI nr
Match: gi|659119712|ref|XP_008459802.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-18
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKM+AV L+CIVV+A LQ ++A +  + A YEAKF+AKY+ C+  CEKEC+E+G G S
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYEAKFDAKYKACFVICEKECVERGGGHS 60

Query: 61 FCEVKCDEDCGEKEAAASRTLIV 84
          +CEVKCDEDCG KEAA    +I+
Sbjct: 61 YCEVKCDEDCGAKEAADKLGIIL 83

[Close]
BLAST of CmaCh17G005410 vs. NCBI nr
Match: gi|700191282|gb|KGN46486.1| (hypothetical protein Csa_6G102480 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-18
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+ VLL+CIV+MA L+ S      KE KYE+KF+A+Y+ CYE CEKECL  G NGQ
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCGEKEAA 77
          S+CEVKCDEDC EKE A
Sbjct: 61 SYCEVKCDEDCDEKEVA 77

The following BLAST results are available for this feature:
BLAST of CmaCh17G005410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ALL6_OLEEU8.4e-0756.76Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1[more]
BLAST of CmaCh17G005410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCI6_CUCSA1.2e-2073.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1[more]
A0A0A0KDP7_CUCSA1.5e-1863.16Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1[more]
A0A0A0KFH6_CUCSA1.9e-1866.23Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1[more]
A0A0A0KPA7_CUCSA2.5e-1868.42Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1[more]
A0A0A0K9Z9_CUCSA7.3e-1868.83Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1[more]
BLAST of CmaCh17G005410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G005410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191315|gb|KGN46519.1|1.7e-2073.33hypothetical protein Csa_6G106710 [Cucumis sativus][more]
gi|659114221|ref|XP_008456958.1|3.0e-2069.74PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|449445523|ref|XP_004140522.1|2.1e-1863.16PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|659119712|ref|XP_008459802.1|2.1e-1860.24PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|700191282|gb|KGN46486.1|2.8e-1866.23hypothetical protein Csa_6G102480 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015333Pollen_allergen_ole-e-6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G005410.1CmaCh17G005410.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015333Pollen allergen ole e 6GENE3DG3DSA:1.10.287.720coord: 39..77
score: 9.1
IPR015333Pollen allergen ole e 6PFAMPF09253Ole-e-6coord: 44..77
score: 3.4
IPR015333Pollen allergen ole e 6unknownSSF111388Pollen allergen ole e 6coord: 38..75
score: 2.48
NoneNo IPR availablePANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..86
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G005410Watermelon (97103) v2cmawmbB377
CmaCh17G005410Wax gourdcmawgoB0457
CmaCh17G005410Cucurbita maxima (Rimu)cmacmaB386
CmaCh17G005410Cucurbita maxima (Rimu)cmacmaB375
CmaCh17G005410Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G005410Cucurbita moschata (Rifu)cmacmoB368
CmaCh17G005410Cucurbita moschata (Rifu)cmacmoB378
CmaCh17G005410Melon (DHL92) v3.5.1cmameB313
CmaCh17G005410Watermelon (Charleston Gray)cmawcgB328
CmaCh17G005410Watermelon (97103) v1cmawmB351
CmaCh17G005410Cucurbita pepo (Zucchini)cmacpeB390
CmaCh17G005410Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G005410Cucurbita pepo (Zucchini)cmacpeB381
CmaCh17G005410Bottle gourd (USVL1VR-Ls)cmalsiB331
CmaCh17G005410Melon (DHL92) v3.6.1cmamedB365
CmaCh17G005410Silver-seed gourdcarcmaB0105
CmaCh17G005410Silver-seed gourdcarcmaB0109