CmaCh17G005390 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G005390
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPolygalacturonase
LocationCma_Chr17 : 4252183 .. 4253288 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGAAGGAGTTTCTGATGACCAAGGAAAAGCAGCTTGGAAAAAGAATGATGGCCACAAACGTATAAATTGTGCCCAACTTTCAGCTTTCCTTCTCAATCTCATGCATCCAGTTGTTTTTGAAAGGGCCTCTTACATGTCTTCTCTAATGTTCTGACATTTATGATTTGGTAAATGTTCTTTCATTTTCTAGAGGATAATCTTTAAATAATCAAGTTGAAAAGTGAAATTTTTTTTAGTTTTCAATTTTATTGGTTCTGTTCAAATTTTTAGCTTCATTACTGACTCTCACAAAATATTATTTGATTATACAAAATGTTTAGAGTTTGAGGTTCAACTTCATCACCAATTCAACCGTTAAGAGAATAACGTCACTTGATAGCAAGAACTTCCATATCAACGTCCTCGGCTGCAACAACCTCACATTCCATAATATCAATATAATAGCACTAGAAAACAGTCCCAACACTGATGGAATACACATCGGTCGATCAAATAAGATCACAATCACAAAGTCCAAAATTACAACCAGAGATGATTGCATTTCTCTTAGAGATGGAAGCAAACTAATTGAAGTCACTAACGTGACGTGCGGGCGAGGACATGGTATAAGCATCAAAAGTCTTGGAAGATACACTAACGAAGAACCTGCTGAAGGTGTCATCGTAAAGAACTGCACGTTAACTAACACCGCTAATGGTGTCAGGATCAAAACGTGGCCAACTTCTACTGCTAGCGGCACCGCCACCAATATGCACTTTTTGAACATTATAATGGTCAATGTTAGCAACCCTATTCTAATAGACCAAGAGTATTGTCCGTGGAATTAGTGCAATCGGCAGGTATGGATCGCATTCTCGAACCTTTGATTCATTTTTTCATTATAACTTCACAAATAAACCATTTGTTATCTCATTTTAATTTTCACATTCCTTCAAAAATTAAGATTAGTACAGTGAGCTTCAAGAACATTAGAGGAAGTTCTGCAACTCCACTGGCAATCAAACTTATTTGCAGCCGTCACTTACCATGTGACGATGTAAAAGTAAGCAACATTGACCTCACTTACAATGGAATAAAAGGTTCTATTTCCTCCCAATGCACGAAT

mRNA sequence

GTGAAGGAGTTTCTGATGACCAAGGAAAAGCAGCTTGGAAAAAGAATGATGGCCACAAACAGTTTGAGGTTCAACTTCATCACCAATTCAACCGTTAAGAGAATAACGTCACTTGATAGCAAGAACTTCCATATCAACGTCCTCGGCTGCAACAACCTCACATTCCATAATATCAATATAATAGCACTAGAAAACAGTCCCAACACTGATGGAATACACATCGGTCGATCAAATAAGATCACAATCACAAAGTCCAAAATTACAACCAGAGATGATTGCATTTCTCTTAGAGATGGAAGCAAACTAATTGAAGTCACTAACGTGACGTGCGGGCGAGGACATGGTATAAGCATCAAAAGTCTTGGAAGATACACTAACGAAGAACCTGCTGAAGGTGTCATCGTAAAGAACTGCACGTTAACTAACACCGCTAATGGTGTCAGGATCAAAACGTGGCCAACTTCTACTGCTAGCGGCACCGCCACCAATATGCACTTTTTGAACATTATAATGGTCAATCAACCCTATTCTAATAGACCAAGAGTATTGTCCGTGGAATTAGTGCAATCGGCAGTGAGCTTCAAGAACATTAGAGGAAGTTCTGCAACTCCACTGGCAATCAAACTTATTTGCAGCCGTCACTTACCATGTGACGATGTAAAAGTAAGCAACATTGACCTCACTTACAATGGAATAAAAGGTTCTATTTCCTCCCAATGCACGAAT

Coding sequence (CDS)

GTGAAGGAGTTTCTGATGACCAAGGAAAAGCAGCTTGGAAAAAGAATGATGGCCACAAACAGTTTGAGGTTCAACTTCATCACCAATTCAACCGTTAAGAGAATAACGTCACTTGATAGCAAGAACTTCCATATCAACGTCCTCGGCTGCAACAACCTCACATTCCATAATATCAATATAATAGCACTAGAAAACAGTCCCAACACTGATGGAATACACATCGGTCGATCAAATAAGATCACAATCACAAAGTCCAAAATTACAACCAGAGATGATTGCATTTCTCTTAGAGATGGAAGCAAACTAATTGAAGTCACTAACGTGACGTGCGGGCGAGGACATGGTATAAGCATCAAAAGTCTTGGAAGATACACTAACGAAGAACCTGCTGAAGGTGTCATCGTAAAGAACTGCACGTTAACTAACACCGCTAATGGTGTCAGGATCAAAACGTGGCCAACTTCTACTGCTAGCGGCACCGCCACCAATATGCACTTTTTGAACATTATAATGGTCAATCAACCCTATTCTAATAGACCAAGAGTATTGTCCGTGGAATTAGTGCAATCGGCAGTGAGCTTCAAGAACATTAGAGGAAGTTCTGCAACTCCACTGGCAATCAAACTTATTTGCAGCCGTCACTTACCATGTGACGATGTAAAAGTAAGCAACATTGACCTCACTTACAATGGAATAAAAGGTTCTATTTCCTCCCAATGCACGAAT

Protein sequence

VKEFLMTKEKQLGKRMMATNSLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKITITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTLTNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQPYSNRPRVLSVELVQSAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN
Homology
[Close]
BLAST of CmaCh17G005390 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-60
Identity = 121/233 (51.93%), Postives = 160/233 (68.67%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           +LR   +TNS ++ +T+LDSKNFH+NV+GC NLTF    I A E S NTDGIHIGRS+ +
Sbjct: 109 NLRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGV 168

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
            I  ++I T DDCISL DGSK I +TN+TCG GHGIS+ SLGRY NEE   G+ VKNCT+
Sbjct: 169 NIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTI 228

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNI--------IMVNQ---PYSNRPRVLSVELVQ 200
           T + NGVRIKTWP S   G A+ MHF +I        I+++Q   PY+     +   +  
Sbjct: 229 TGSQNGVRIKTWPKS-EPGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKL 288

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           S +SFKNI+G+S T  A+KL+CS+  PC+ V++++IDLTY+G  G  +S C N
Sbjct: 289 SKISFKNIKGTSTTKEAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCEN 340

[Close]
BLAST of CmaCh17G005390 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-55
Identity = 116/244 (47.54%), Postives = 159/244 (65.16%), Query Frame = 1 

Query: 10  KQLGKRMMATNSLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNT 69
           KQ  K     N+L FN +TNST+K IT+LDSK+FH+NV  C NLTF   N+ A  NSPNT
Sbjct: 132 KQSKKCNKLPNNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNT 191

Query: 70  DGIHIGRSNKITITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEP 129
           DGIH+ RS+ + IT S  +T DDCIS+ D ++ + +T VTCG GHGIS+ SLG   +E+P
Sbjct: 192 DGIHVSRSSSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLGGNPDEKP 251

Query: 130 AEGVIVKNCTLTNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQ-----------PYSN 189
             GV V+NCT TNT NGVRIKTWP S   G   ++HF +II+ N            P++ 
Sbjct: 252 VVGVFVRNCTFTNTDNGVRIKTWPASHP-GVVNDVHFEDIIVQNVSNPVVIDQVYCPFNK 311

Query: 190 RPRVLSVELVQSAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISS 243
             + L  ++  S VSF+NI+G+S T  A+ L+ S+ +PC+ ++V +ID+TY+G +G   S
Sbjct: 312 CNKDLPSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGKEGPAKS 371

[Close]
BLAST of CmaCh17G005390 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.6e-55
Identity = 108/230 (46.96%), Postives = 150/230 (65.22%), Query Frame = 1 

Query: 24  FNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKITIT 83
           FNF+ NS V+ +TS DSKNFH+ V GC N+TF    I A  +SPNTDGIH+G+S  + I 
Sbjct: 152 FNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDVKIL 211

Query: 84  KSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTLTNT 143
            + I T DDC+S+ DGSK I V  V CG GHG+S+ SLG++T EE  EG+ VKNCTLT T
Sbjct: 212 NTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTAT 271

Query: 144 ANGVRIKTWPTSTASGTATNMHFLNIIMVN-----------QPYSNRPRVLSVELVQSAV 203
            NGVRIKTWP +  + T +++HF +I M N            P++   +    ++  S +
Sbjct: 272 DNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKNPSKIKLSKI 331

Query: 204 SFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           SFKN++G+S T   + LICS  +PCD V+++N+DL +NG     +++CTN
Sbjct: 332 SFKNVKGTSGTAEGVVLICSSAVPCDGVELNNVDLKFNG--APTTAKCTN 379

[Close]
BLAST of CmaCh17G005390 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.8e-54
Identity = 110/233 (47.21%), Postives = 154/233 (66.09%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           ++RF+F+TN+ ++ ITS DSK FHINV  C N+T   + I A + SPNTDGIH+G+S  +
Sbjct: 151 NIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGV 210

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
            I  S I T DDCIS+ DG+K + +  +TCG GHGISI SLG++ NEEP EG+ + NCT+
Sbjct: 211 NIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTI 270

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQ-----------PYSNRPRVLSVELVQ 200
           TNT+NG RIKTWP     G  + +HF +I M N            P++   +    ++  
Sbjct: 271 TNTSNGARIKTWP-GEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKL 330

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           S +SFKNIRG+SA P AIK ICS   PC +V++++ID+ +NG + + +SQC N
Sbjct: 331 SNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIQHNGAEPA-TSQCLN 381

[Close]
BLAST of CmaCh17G005390 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.6e-54
Identity = 110/233 (47.21%), Postives = 154/233 (66.09%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           ++RF+F+TN+ ++ ITS DSK FHINV  C N+T   + I A + SPNTDGIH+G+S  +
Sbjct: 151 NIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGV 210

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
            I  S I T DDCIS+ DG+K + +  +TCG GHGISI SLG++ NEEP EG+ + NCT+
Sbjct: 211 NIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTI 270

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQ-----------PYSNRPRVLSVELVQ 200
           TNT+NG RIKTWP     G  + +HF +I M N            P++   +    ++  
Sbjct: 271 TNTSNGARIKTWP-GEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKL 330

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           S +SFKNIRG+SA P AIK ICS   PC +V++++ID+ +NG + + +SQC N
Sbjct: 331 SNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAEPA-TSQCLN 381

[Close]
BLAST of CmaCh17G005390 vs. TrEMBL
Match: A0A0A0K3B7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.4e-81
Identity = 157/233 (67.38%), Postives = 182/233 (78.11%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           SLRF+FITNS V+RITSLDSKNFH+N+LGCNNLTF  +NIIA ENSPNTDGIHIGRS  I
Sbjct: 149 SLRFDFITNSIVRRITSLDSKNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIGI 208

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
           +I KS+I T DDCISL DGSK I+V NV CG GHGISI SLG+Y NEEP EGVIV NCT+
Sbjct: 209 SILKSRIATGDDCISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNNCTI 268

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQ-----------PYSNRPRVLSVELVQ 200
            NT NGVRIKTWP S  +G ATNMHF +I MVN            P++   R +   +  
Sbjct: 269 INTTNGVRIKTWPASPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNREIPSNIKI 328

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           + VSFKNIRGSSATP+A+KLICS +LPC++VKV+NIDL YNGIKGSI+S+C N
Sbjct: 329 NKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSITSECMN 381

[Close]
BLAST of CmaCh17G005390 vs. TrEMBL
Match: W9SC16_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020041 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.6e-64
Identity = 132/233 (56.65%), Postives = 166/233 (71.24%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           ++RFN++TNS ++ ITSLDSK FHINVLGC N+TF ++ IIA ENSP+TDGIHIGRS  I
Sbjct: 149 NIRFNYVTNSIIQEITSLDSKQFHINVLGCQNVTFQHVKIIAAENSPHTDGIHIGRSTDI 208

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
            +  S I T DDCISL DGSK I +  VTCG GHGISI SLG+Y NEE  +GV VK+CTL
Sbjct: 209 KVLDSNIQTGDDCISLGDGSKQITIAKVTCGPGHGISIGSLGKYLNEEAVKGVDVKSCTL 268

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQ-----------PYSNRPRVLSVELVQ 200
            NT NGVRIKTWP S   G A+++HF +IIM N            P++     L   +  
Sbjct: 269 KNTQNGVRIKTWPDS-QEGKASDLHFEDIIMENVGNPVMIDQEYCPWNQCVSQLPSRVQI 328

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           S V FKNIRG+S+T LA+KL+CS  LPC DV++++IDL Y+G +G I+S+C N
Sbjct: 329 SGVRFKNIRGTSSTALAVKLVCSGGLPCQDVEMTDIDLKYSGDEGQITSECKN 380

[Close]
BLAST of CmaCh17G005390 vs. TrEMBL
Match: F6H559_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01270 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.0e-63
Identity = 134/233 (57.51%), Postives = 169/233 (72.53%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           +LRFNFITNS VK ITS DSK FHIN+LGC NLTF+NI I A + S NTDGIHIGRS+ I
Sbjct: 149 NLRFNFITNSMVKDITSRDSKQFHINLLGCKNLTFYNIVISAPQESLNTDGIHIGRSSGI 208

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
            IT S I T DDC+S+ DGS+ I +  VTCG GHGIS+ SLG+Y NEEP  G+ VKNCTL
Sbjct: 209 NITDSTIETGDDCVSIGDGSEQINIQRVTCGPGHGISVGSLGKYPNEEPVVGISVKNCTL 268

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNIIM--------VNQPY--SNRPRVLSVELVQ- 200
           TNT NGVR+KTWP S   GTA+ MHF +I+M        ++Q Y   N+  + S   ++ 
Sbjct: 269 TNTQNGVRVKTWPAS-HQGTASEMHFEDIVMNNVGNPIIIDQEYCPHNQCNLKSPSRIKI 328

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           S VSF+NIRG+++T +A+KLICS+ +PC DV++ +I+L YNG +G   SQC N
Sbjct: 329 SNVSFRNIRGTTSTQVAVKLICSQGVPCHDVELGDINLEYNGNEGPAMSQCKN 380

[Close]
BLAST of CmaCh17G005390 vs. TrEMBL
Match: E0CTY4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01290 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 3.0e-63
Identity = 133/233 (57.08%), Postives = 168/233 (72.10%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           +LRFNFITNS VK ITS DSK FHIN+LGC NLTF+N+ I A + S NTDGIHIGRS+ I
Sbjct: 149 NLRFNFITNSMVKDITSRDSKQFHINLLGCKNLTFYNVVISAPQESLNTDGIHIGRSSGI 208

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
            IT S I T DDC+S+ DGS+ I +  VTCG GHGIS+ SLG+Y NEEP  G+ VKNCTL
Sbjct: 209 NITDSTIETGDDCVSIGDGSEQINIQRVTCGPGHGISVGSLGKYPNEEPVVGISVKNCTL 268

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNIIM--------VNQPY--SNRPRVLSVELVQ- 200
           TNT NGVR+KTWP S   GTA+ MHF +I+M        ++Q Y   N+  + S   ++ 
Sbjct: 269 TNTQNGVRVKTWPAS-HQGTASEMHFEDIVMNNVGNPIIIDQEYCPHNQCNLKSPSRIKI 328

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           S VSF+NIRG+++T +A+KLICS+  PC DV++ +I+L YNG +G   SQC N
Sbjct: 329 SNVSFRNIRGTTSTQVAVKLICSQGEPCQDVELGDINLEYNGNEGPAMSQCKN 380

[Close]
BLAST of CmaCh17G005390 vs. TrEMBL
Match: A0A147BN67_IXORI (Putative polygalacturonase/glycoside hydrolase family protein (Fragment) OS=Ixodes ricinus PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.6e-62
Identity = 128/244 (52.46%), Postives = 170/244 (69.67%), Query Frame = 1 

Query: 10  KQLGKRMMATNSLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNT 69
           K    + +A N +RFNFITNS V+ I SL+SKNFHIN+LGC N TF ++ I A  +SPNT
Sbjct: 113 KTFNCKTLAVN-IRFNFITNSLVRDIKSLNSKNFHINLLGCKNFTFQHVTITAPGDSPNT 172

Query: 70  DGIHIGRSNKITITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEP 129
           DGIHIGRS+ I IT + I T DDCIS+ DGS+ + +  VTCG GHGISI SLG+YTNEEP
Sbjct: 173 DGIHIGRSSGINITDTNIATGDDCISMGDGSQDVTINKVTCGPGHGISIGSLGKYTNEEP 232

Query: 130 AEGVIVKNCTLTNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQ-----------PYSN 189
             G+ V  CTLT+TANGVRIKTWP++  SG+AT+MHF +IIM N            P++ 
Sbjct: 233 VSGIKVIGCTLTDTANGVRIKTWPSNPTSGSATDMHFEDIIMNNVANPIIIDQVYCPWNQ 292

Query: 190 RPRVLSVELVQSAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISS 243
               +  ++  S +SF+ IRG+S+T  A+KL+CS  +PC+ V++++IDL Y G +G  +S
Sbjct: 293 CKAQVPSKIKLSNMSFRGIRGTSSTREAVKLVCSSGIPCEKVELADIDLVYKGPEGPATS 352

[Close]
BLAST of CmaCh17G005390 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 229.2 bits (583), Expect = 2.8e-60
Identity = 116/235 (49.36%), Postives = 164/235 (69.79%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           S+RF+FI NS ++ I+S+D+KNFHINVLG  N+T +NI I+A E+SPNTDGIH+GRS+ +
Sbjct: 140 SIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGV 199

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
            I  S I+T DDCIS+ DG K + V  VTCG GHGIS+ SLGRY +E+   G+ V NCTL
Sbjct: 200 KILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTL 259

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNI--------IMVNQPY-----SNRPRVLSVEL 200
             T NG+RIKTWP++  S TA+++HF +I        I+++Q Y      N+ +  +++L
Sbjct: 260 QETDNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKL 319

Query: 201 VQSAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           V   +SFKNIRG+S    A+KL+CS+  PC +V++ +ID+ YNG  G  +  C+N
Sbjct: 320 VN--ISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPATFHCSN 372

[Close]
BLAST of CmaCh17G005390 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 225.7 bits (574), Expect = 3.0e-59
Identity = 114/235 (48.51%), Postives = 159/235 (67.66%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           S+RF+F+ N+ ++ I+S+D+KNFHINVLG  N+TF N+ +IA   SPNTDGIH+GRS  +
Sbjct: 141 SIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGV 200

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
            I  SKI T DDCIS+ DG K + V NV CG GHGIS+ SLGRY +E+   G+ V NCTL
Sbjct: 201 KILNSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVGSLGRYVHEQDVTGITVVNCTL 260

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNI--------IMVNQPY-----SNRPRVLSVEL 200
             T NG+RIKTWP++  + TA+ +HF NI        I+++Q Y      N+ +  +++L
Sbjct: 261 QGTDNGLRIKTWPSAACATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQKPSTIKL 320

Query: 201 VQSAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           V   +SFKNIRG+S    A+KL+CS+  PC +V++ NI+L Y G  G  +  C+N
Sbjct: 321 VD--ISFKNIRGTSGNKDAVKLLCSKAHPCANVEIGNINLEYKGADGPPTFMCSN 373

[Close]
BLAST of CmaCh17G005390 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-57
Identity = 110/235 (46.81%), Postives = 161/235 (68.51%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           S+RF+F+TN+ ++ I+S+D+KNFHINV+G  N+TF N+ I+A   SPNTDGIH+GRS  +
Sbjct: 141 SIRFDFVTNAEIRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGV 200

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
           +I  S+I+T DDC+S+ DG   + V NV CG GHGIS+ SLGRY +E+   G+ V NCTL
Sbjct: 201 SIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSGIRVINCTL 260

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNI--------IMVNQPY-----SNRPRVLSVEL 200
             T NG+RIKTWP++  S TA+N+HF NI        I+++Q Y      N+ +  S++L
Sbjct: 261 QETDNGLRIKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSSIKL 320

Query: 201 VQSAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
               +SF+ IRG+S    A+KL+CS+  PC++V+V +I++ Y G  G  +  C+N
Sbjct: 321 AN--ISFRRIRGTSGNKDAVKLLCSKGYPCENVQVGDINIQYTGADGPATFMCSN 373

[Close]
BLAST of CmaCh17G005390 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 219.5 bits (558), Expect = 2.2e-57
Identity = 111/235 (47.23%), Postives = 162/235 (68.94%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           S+RF+F+T++ ++ ITSLD+K+FHINV+G  N+TF ++ IIA   SPNTDGIH+GRS+ I
Sbjct: 140 SIRFDFVTDAKIRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGI 199

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
            I  S I+T DDC+S+ DG K + V  VTCG GHGISI SLGRY++EE   G+ + NCTL
Sbjct: 200 KIINSFISTGDDCVSVGDGMKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCTL 259

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNI--------IMVNQPY-----SNRPRVLSVEL 200
             T NG+RIKTWP++  + TA+++HF NI        I+++Q Y      N+ +  +++L
Sbjct: 260 QETDNGLRIKTWPSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQKPSTIKL 319

Query: 201 VQSAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
               +SFK IRG+S    A+KL+CS+  PC +V+V ++++ Y G  G  + QC+N
Sbjct: 320 AN--ISFKKIRGTSGNKDAVKLLCSKGYPCQNVEVGDVNIQYTGADGPATFQCSN 372

[Close]
BLAST of CmaCh17G005390 vs. TAIR10
Match: AT3G14040.1 (AT3G14040.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 110/233 (47.21%), Postives = 154/233 (66.09%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           ++RF  +TNS +  ITS +SK FH+N+L C N+T  +I I A   S NTDGIHIGRSN +
Sbjct: 192 NIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLTDIGIDAPPESLNTDGIHIGRSNGV 251

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
            +  +KI T DDC+S+ DG++ + V NV CG GHGISI SLGRY NE+P +GV V+ C +
Sbjct: 252 NLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLI 311

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQ-----------PYSNRPRVLSVELVQ 200
            NT NGVRIKTWP S   G A+N+ F +I M N            PY +    +  ++  
Sbjct: 312 KNTDNGVRIKTWPGS-PPGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKL 371

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           S V+ KNI+G+SAT +A+KL+CS+ +PC ++ +S+I+L +NG +G   S C+N
Sbjct: 372 SDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 423

[Close]
BLAST of CmaCh17G005390 vs. NCBI nr
Match: gi|659111053|ref|XP_008455553.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 317.8 bits (813), Expect = 1.7e-83
Identity = 159/233 (68.24%), Postives = 188/233 (80.69%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           SLRFNFITNS V+RITSLDSKNFH+N+LGCNNLTF  +NIIA E+SPNTDGIHIGRS  I
Sbjct: 150 SLRFNFITNSIVRRITSLDSKNFHVNILGCNNLTFDGVNIIAPEDSPNTDGIHIGRSIGI 209

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
           +I KS+I T DDCISL DGSK +++TNVTCG GHGISI SLG+YTNEEP EGVIVKNCT+
Sbjct: 210 SILKSRIATGDDCISLGDGSKRVKITNVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCTI 269

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQ-----------PYSNRPRVLSVELVQ 200
            NT NGVRIKTWP S  +G ATNMHFL+I MVN            P++   R +  ++  
Sbjct: 270 MNTTNGVRIKTWPASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 329

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           + VSFKNIRGSSATP+A+KLICS +LPC++VKV+NIDL YNGIKGS++S+C N
Sbjct: 330 NKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSLTSECMN 382

[Close]
BLAST of CmaCh17G005390 vs. NCBI nr
Match: gi|778730103|ref|XP_011659699.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 7.7e-81
Identity = 157/233 (67.38%), Postives = 182/233 (78.11%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           SLRF+FITNS V+RITSLDSKNFH+N+LGCNNLTF  +NIIA ENSPNTDGIHIGRS  I
Sbjct: 134 SLRFDFITNSIVRRITSLDSKNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIGI 193

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
           +I KS+I T DDCISL DGSK I+V NV CG GHGISI SLG+Y NEEP EGVIV NCT+
Sbjct: 194 SILKSRIATGDDCISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNNCTI 253

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQ-----------PYSNRPRVLSVELVQ 200
            NT NGVRIKTWP S  +G ATNMHF +I MVN            P++   R +   +  
Sbjct: 254 INTTNGVRIKTWPASPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNREIPSNIKI 313

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           + VSFKNIRGSSATP+A+KLICS +LPC++VKV+NIDL YNGIKGSI+S+C N
Sbjct: 314 NKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSITSECMN 366

[Close]
BLAST of CmaCh17G005390 vs. NCBI nr
Match: gi|700188231|gb|KGN43464.1| (hypothetical protein Csa_7G037910 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 7.7e-81
Identity = 157/233 (67.38%), Postives = 182/233 (78.11%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           SLRF+FITNS V+RITSLDSKNFH+N+LGCNNLTF  +NIIA ENSPNTDGIHIGRS  I
Sbjct: 149 SLRFDFITNSIVRRITSLDSKNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIGI 208

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
           +I KS+I T DDCISL DGSK I+V NV CG GHGISI SLG+Y NEEP EGVIV NCT+
Sbjct: 209 SILKSRIATGDDCISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNNCTI 268

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQ-----------PYSNRPRVLSVELVQ 200
            NT NGVRIKTWP S  +G ATNMHF +I MVN            P++   R +   +  
Sbjct: 269 INTTNGVRIKTWPASPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNREIPSNIKI 328

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           + VSFKNIRGSSATP+A+KLICS +LPC++VKV+NIDL YNGIKGSI+S+C N
Sbjct: 329 NKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSITSECMN 381

[Close]
BLAST of CmaCh17G005390 vs. NCBI nr
Match: gi|658027302|ref|XP_008349086.1| (PREDICTED: exopolygalacturonase-like [Malus domestica])

HSP 1 Score: 275.0 bits (702), Expect = 1.2e-70
Identity = 136/233 (58.37%), Postives = 178/233 (76.39%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           ++RFNF+TNST++ ITSLDSKNFH+NVLGC+N+TF  +N+ A   S NTDGIHIGRS  I
Sbjct: 149 NMRFNFVTNSTIQDITSLDSKNFHVNVLGCHNVTFQRVNVTAPGESINTDGIHIGRSTGI 208

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
            IT + I T DDC+S+ DG+K I VT VTCG GHGIS+ SLGRY NEEP  G+ VKNCTL
Sbjct: 209 NITDAHIGTGDDCVSIGDGNKEITVTRVTCGPGHGISVGSLGRYPNEEPVVGIRVKNCTL 268

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQ-----------PYSNRPRVLSVELVQ 200
           TNT+NGVRIKTWP S + G A++MHF +IIMVN            P++   + +  ++  
Sbjct: 269 TNTSNGVRIKTWPASPSDGIASDMHFEDIIMVNVSNPVLIDQQYCPWNQCKQNVPSKVKI 328

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           S VSFKNI+GSSATPLA++++CS  +PC++V++++IDLTYNG KG ++SQC+N
Sbjct: 329 SNVSFKNIKGSSATPLAVQIVCSGGIPCENVELADIDLTYNGNKGPLTSQCSN 381

[Close]
BLAST of CmaCh17G005390 vs. NCBI nr
Match: gi|657997737|ref|XP_008391258.1| (PREDICTED: exopolygalacturonase-like [Malus domestica])

HSP 1 Score: 275.0 bits (702), Expect = 1.2e-70
Identity = 136/233 (58.37%), Postives = 178/233 (76.39%), Query Frame = 1 

Query: 21  SLRFNFITNSTVKRITSLDSKNFHINVLGCNNLTFHNINIIALENSPNTDGIHIGRSNKI 80
           ++RFNF+TNST++ ITSLDSKNFH+NVLGC+N+TF  +N+ A   S NTDGIHIGRS  I
Sbjct: 149 NMRFNFVTNSTIQDITSLDSKNFHVNVLGCHNVTFXRVNVTAPXESINTDGIHIGRSTGI 208

Query: 81  TITKSKITTRDDCISLRDGSKLIEVTNVTCGRGHGISIKSLGRYTNEEPAEGVIVKNCTL 140
            IT + I T DDC+S+ DG+K I VT VTCG GHGIS+ SLGRY NEEP  G+ VKNCTL
Sbjct: 209 NITDAHIGTGDDCVSIGDGNKEITVTRVTCGPGHGISVGSLGRYPNEEPVVGIRVKNCTL 268

Query: 141 TNTANGVRIKTWPTSTASGTATNMHFLNIIMVNQ-----------PYSNRPRVLSVELVQ 200
           TNT+NGVRIKTWP S + G A++MHF +IIMVN            P++   + +  ++  
Sbjct: 269 TNTSNGVRIKTWPASPSDGIASDMHFEDIIMVNVSNPVLIDQQYCPWNQCKQNVPSKVKI 328

Query: 201 SAVSFKNIRGSSATPLAIKLICSRHLPCDDVKVSNIDLTYNGIKGSISSQCTN 243
           S VSFKNI+GSSATPLA++++CS  +PC++V++++IDLTYNG KG ++SQC+N
Sbjct: 329 SNVSFKNIKGSSATPLAVQIVCSGGIPCENVELADIDLTYNGNKGPLTSQCSN 381

The following BLAST results are available for this feature:
BLAST of CmaCh17G005390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_OENOR1.2e-6051.93Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
PGLR_TOBAC1.1e-5547.54Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1[more]
PGLR_MEDSA5.6e-5546.96Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR_GOSBA2.8e-5447.21Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1[more]
PGLR_GOSHI3.6e-5447.21Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1[more]
BLAST of CmaCh17G005390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3B7_CUCSA5.4e-8167.38Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1[more]
W9SC16_9ROSA1.6e-6456.65Uncharacterized protein OS=Morus notabilis GN=L484_020041 PE=3 SV=1[more]
F6H559_VITVI1.0e-6357.51Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01270 PE=3 SV=... [more]
E0CTY4_VITVI3.0e-6357.08Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01290 PE=3 SV=... [more]
A0A147BN67_IXORI5.6e-6252.46Putative polygalacturonase/glycoside hydrolase family protein (Fragment) OS=Ixod... [more]
BLAST of CmaCh17G005390 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07820.12.8e-6049.36 Pectin lyase-like superfamily protein[more]
AT3G07840.13.0e-5948.51 Pectin lyase-like superfamily protein[more]
AT3G07830.11.3e-5746.81 Pectin lyase-like superfamily protein[more]
AT5G48140.12.2e-5747.23 Pectin lyase-like superfamily protein[more]
AT3G14040.11.9e-5347.21 Pectin lyase-like superfamily protein[more]
BLAST of CmaCh17G005390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111053|ref|XP_008455553.1|1.7e-8368.24PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|778730103|ref|XP_011659699.1|7.7e-8167.38PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|700188231|gb|KGN43464.1|7.7e-8167.38hypothetical protein Csa_7G037910 [Cucumis sativus][more]
gi|658027302|ref|XP_008349086.1|1.2e-7058.37PREDICTED: exopolygalacturonase-like [Malus domestica][more]
gi|657997737|ref|XP_008391258.1|1.2e-7058.37PREDICTED: exopolygalacturonase-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR006626PbH1
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G005390.1CmaCh17G005390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 18..242
score: 1.5
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 217..240
score: 6700.0coord: 100..120
score: 4900.0coord: 77..98
score: 1800.0coord: 130..151
score: 0.85coord: 50..76
score: 2
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 20..242
score: 2.71
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 20..242
score: 1.1
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 21..242
score: 8.6E
NoneNo IPR availablePANTHERPTHR31375:SF37PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 21..242
score: 8.6E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G005390Wax gourdcmawgoB0457
CmaCh17G005390Cucurbita maxima (Rimu)cmacmaB386
CmaCh17G005390Cucurbita maxima (Rimu)cmacmaB375
CmaCh17G005390Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G005390Cucurbita moschata (Rifu)cmacmoB368
CmaCh17G005390Cucurbita moschata (Rifu)cmacmoB378
CmaCh17G005390Melon (DHL92) v3.5.1cmameB313
CmaCh17G005390Watermelon (Charleston Gray)cmawcgB328
CmaCh17G005390Watermelon (97103) v1cmawmB351
CmaCh17G005390Cucurbita pepo (Zucchini)cmacpeB390
CmaCh17G005390Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G005390Cucurbita pepo (Zucchini)cmacpeB381
CmaCh17G005390Bottle gourd (USVL1VR-Ls)cmalsiB331
CmaCh17G005390Cucumber (Gy14) v2cgybcmaB756
CmaCh17G005390Melon (DHL92) v3.6.1cmamedB365
CmaCh17G005390Silver-seed gourdcarcmaB0105
CmaCh17G005390Silver-seed gourdcarcmaB0109
CmaCh17G005390Watermelon (97103) v2cmawmbB377