CmaCh17G005380 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G005380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 4230667 .. 4231019 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGAAGATAATTGCAGTGTTGTTGGTGTGCATTGTGGTAATGGCTGCATTGCAGGTTTCGAGTGCAACTGAAAGCGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAGTGCGAGAAGGAATGTCTTGAGAAGGGCAATGACCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGATGAGAAAGAAGTCGCTGGTATACTCTCTTCCTTTTTAAATCATTTTATTCTCATCATTTTTATTTTCTCTTAATAATTAATTAATTGATTTTGTATTTGTATTTGTTTCTAGATAAGCTACACATCAAAGTCAAGAACTGA

mRNA sequence

ATGGCGAAGAAGATAATTGCAGTGTTGTTGGTGTGCATTGTGGTAATGGCTGCATTGCAGGTTTCGAGTGCAACTGAAAGCGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAGTGCGAGAAGGAATGTCTTGAGAAGGGCAATGACCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGATGAGAAAGAAGTCGCTGATAAGCTACACATCAAAGTCAAGAACTGA

Coding sequence (CDS)

ATGGCGAAGAAGATAATTGCAGTGTTGTTGGTGTGCATTGTGGTAATGGCTGCATTGCAGGTTTCGAGTGCAACTGAAAGCGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAGTGCGAGAAGGAATGTCTTGAGAAGGGCAATGACCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGATGAGAAAGAAGTCGCTGATAAGCTACACATCAAAGTCAAGAACTGA

Protein sequence

MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQSFCEVKCDEDCDEKEVADKLHIKVKN
Homology
[Close]
BLAST of CmaCh17G005380 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-07
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 38 EAKYRLCYEKCEKECLEKGNDQSFCEVKCDEDCDEKEVADKL-HIKVKN 86
          EA+++ CY+ C KEC +KGN  +FCE+KCD DC  K+V +KL + K KN
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKLENYKPKN 50

[Close]
BLAST of CmaCh17G005380 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-21
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NDQ 60
          MAKK++ VLL+CIV+MA L+ S      KE KYE+KF+A+Y+ CYE CEKECL  G N Q
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCDEKEVADKLHIKV 84
          S+CEVKCDEDCDEKEVADKLH++V
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEV 84

[Close]
BLAST of CmaCh17G005380 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-21
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 3  KKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGND-QSF 62
          KK++ VLL+CIVVMAAL+ S      KE KYE+KF+AKY+ CYE CEKECLE GN+ QSF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCDEKEVADKLHIKVKN 86
          CEVKCDEDC EKE ADKLHI   N
Sbjct: 64 CEVKCDEDCGEKESADKLHINPAN 87

[Close]
BLAST of CmaCh17G005380 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-20
Identity = 55/83 (66.27%), Postives = 69/83 (83.13%), Query Frame = 1 

Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
          MA K+IA+ L+CIVV+AALQ ++A +    AKYEAKF+AKY+ C+E CEKECL  G+ QS
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKE-DVAKYEAKFDAKYKSCFETCEKECLRYGSGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHIKV 84
          +CEVKCDEDCDEKE ADKLHI++
Sbjct: 61 YCEVKCDEDCDEKEAADKLHIEL 82

[Close]
BLAST of CmaCh17G005380 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-19
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1 

Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NDQ 60
          MAKK++AV L+CIVV+A LQ   A E     KYEAKF+AKY+ CYE CEKECL    N +
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCDEKEVADKLHIKV 84
          SFCEVKCDEDC EKE ADKLHI++
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIEL 84

[Close]
BLAST of CmaCh17G005380 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-18
Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = 1 

Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
          MAKK++AV L+CIVV+ +LQ ++A +  + A YEAKF+AKY+ C+  CEKEC+E+G+  S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCDEKEVADKLHI 82
          +CEVKCDEDC  KE ADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]
BLAST of CmaCh17G005380 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-22
Identity = 57/83 (68.67%), Postives = 73/83 (87.95%), Query Frame = 1 

Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
          MAKK+IA+ L+CIVV+AALQ +SA +  + AKYEAKF+AKY+ C++ CEKECLE G+ QS
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHIKV 84
          +CEVKCDEDC+EKEVADKLHI++
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIEL 83

[Close]
BLAST of CmaCh17G005380 vs. NCBI nr
Match: gi|700191282|gb|KGN46486.1| (hypothetical protein Csa_6G102480 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-21
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NDQ 60
          MAKK++ VLL+CIV+MA L+ S      KE KYE+KF+A+Y+ CYE CEKECL  G N Q
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCDEKEVADKLHIKV 84
          S+CEVKCDEDCDEKEVADKLH++V
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEV 84

[Close]
BLAST of CmaCh17G005380 vs. NCBI nr
Match: gi|700191315|gb|KGN46519.1| (hypothetical protein Csa_6G106710 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 4.1e-21
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 3  KKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGND-QSF 62
          KK++ VLL+CIVVMAAL+ S      KE KYE+KF+AKY+ CYE CEKECLE GN+ QSF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCDEKEVADKLHIKVKN 86
          CEVKCDEDC EKE ADKLHI   N
Sbjct: 64 CEVKCDEDCGEKESADKLHINPAN 87

[Close]
BLAST of CmaCh17G005380 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 6.0e-20
Identity = 55/83 (66.27%), Postives = 69/83 (83.13%), Query Frame = 1 

Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
          MA K+IA+ L+CIVV+AALQ ++A +    AKYEAKF+AKY+ C+E CEKECL  G+ QS
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKE-DVAKYEAKFDAKYKSCFETCEKECLRYGSGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHIKV 84
          +CEVKCDEDCDEKE ADKLHI++
Sbjct: 61 YCEVKCDEDCDEKEAADKLHIEL 82

[Close]
BLAST of CmaCh17G005380 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 8.6e-19
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1 

Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKG-NDQ 60
          MAKK++AV L+CIVV+A LQ   A E     KYEAKF+AKY+ CYE CEKECL    N +
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCDEKEVADKLHIKV 84
          SFCEVKCDEDC EKE ADKLHI++
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIEL 84

The following BLAST results are available for this feature:
BLAST of CmaCh17G005380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ALL6_OLEEU3.4e-0753.06Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1[more]
BLAST of CmaCh17G005380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFH6_CUCSA1.7e-2166.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1[more]
A0A0A0KCI6_CUCSA2.9e-2169.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1[more]
A0A0A0KPA7_CUCSA4.2e-2066.27Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1[more]
A0A0A0K9Z9_CUCSA6.0e-1965.48Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1[more]
A0A0A0KDP7_CUCSA1.3e-1860.49Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1[more]
BLAST of CmaCh17G005380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G005380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114221|ref|XP_008456958.1|2.2e-2268.67PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|700191282|gb|KGN46486.1|2.4e-2166.67hypothetical protein Csa_6G102480 [Cucumis sativus][more]
gi|700191315|gb|KGN46519.1|4.1e-2169.05hypothetical protein Csa_6G106710 [Cucumis sativus][more]
gi|449457470|ref|XP_004146471.1|6.0e-2066.27PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|700191316|gb|KGN46520.1|8.6e-1965.48hypothetical protein Csa_6G106720 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015333Pollen_allergen_ole-e-6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G005380.1CmaCh17G005380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015333Pollen allergen ole e 6GENE3DG3DSA:1.10.287.720coord: 39..81
score: 2.6
IPR015333Pollen allergen ole e 6PFAMPF09253Ole-e-6coord: 44..80
score: 8.3
IPR015333Pollen allergen ole e 6unknownSSF111388Pollen allergen ole e 6coord: 38..79
score: 7.32
NoneNo IPR availablePANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..85
score: 1.2
NoneNo IPR availablePANTHERPTHR35632:SF1SUBFAMILY NOT NAMEDcoord: 1..85
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G005380MELO3C022293Melon (DHL92) v3.5.1cmameB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G005380Watermelon (97103) v2cmawmbB377
CmaCh17G005380Wax gourdcmawgoB0457
CmaCh17G005380Cucurbita maxima (Rimu)cmacmaB386
CmaCh17G005380Cucurbita maxima (Rimu)cmacmaB375
CmaCh17G005380Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G005380Cucurbita moschata (Rifu)cmacmoB368
CmaCh17G005380Cucurbita moschata (Rifu)cmacmoB378
CmaCh17G005380Watermelon (Charleston Gray)cmawcgB328
CmaCh17G005380Watermelon (97103) v1cmawmB351
CmaCh17G005380Cucurbita pepo (Zucchini)cmacpeB390
CmaCh17G005380Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G005380Cucurbita pepo (Zucchini)cmacpeB381
CmaCh17G005380Bottle gourd (USVL1VR-Ls)cmalsiB331
CmaCh17G005380Cucumber (Gy14) v2cgybcmaB756
CmaCh17G005380Melon (DHL92) v3.6.1cmamedB365
CmaCh17G005380Silver-seed gourdcarcmaB0105
CmaCh17G005380Silver-seed gourdcarcmaB0109