CmaCh17G005280 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G005280
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transposon Ty1-H Gag-Pol polyprotein
Location	Cma_Chr17 : 3753046 .. 3757845 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCCTATTCACCCCCCCTCTAGGGTTGCCATACCGATCCAACAATTGGTATCAGAGCAGGTTGCTCCTATAGATTTTTTATCTAAACTTTATTGTTCGAGCTTATGGCAAACCTACGTGTTAAAAATGGTTTTAGTGAAGGACAATCAACTTCTAGGCCACCTTATTTTGATGGAACAAATTATACATGTTGGAAAGCTAGGATGAAAATTTATTTGCAATCCGTTGATTATCAATTGTGGTTAAATGTTAGTAATGGTCCTTACATTCCAATAAAAATTGTTAATAATATTGAGGTGCCTAAATTAGAAAATGAATTTGATGAGCATGATATGAAAAAATGTTCTTTGAATGCTAGTGCTATCAATTGTCTGTATTGTGCCTTAAGTAATGATGAATTTAATAGAGTATGTATGTGTTCTTCGGCATATGAAATTTGGAAAACTCTTGAAGTAACTCATGAGGGAACCAATCAAGTTAAAGAAACAAAAATTAGCATGTTAGTTCATAATTATGAACTATTTAAAATGGAGGAAAATGAACCTATTGGTGATATGTTTACTAGATTTACTAATATTTTAAATGCTTTGAAAAATCTTGGAAAAGTATATTCTACCTCCGAAAATGTAAGAAAAATTCTTAGGTCTCTGCCTAAAAGTTGGGAGGCAAAAGTGACGGCGATTCAAGAAGCAAAGGATCTCACAAAGCTTCCTTTGGATGAACTCATTGGTTCTCTCATGACACATGAGATTACCATGAACGGGCACATGGAAGAAGAATCCAAAAAGAAGAAAAGTATAGCCCTAAAATCCATCAAAGTTGACTCTGAAGATGAGGACGTCCTTGATGAAGATGATGTCGCCTACTTCACACGTAAGTATAAAAATTTTATTAAAAGGAAGAAACAATTAAAAAAACATTTCACAAATCAAAAAGAGTCAAAAGGTGAAAAGAGCAAAAACGATGAGGTAATATGTTATGAATGTAAAAAGCCGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCATCTAAGAAATCCAAGAAGAAAGCAATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTTGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTAACTCTTGAATCTCTTTCTTATCATGAATTATTTAAACTTGTTGATGAGATGACAATTGATTTAGAAAAACTTAGTTCAAAGTATGTTGTGCTTAAAAAGAAATATAAGACTTCAATTATTGAAAATAAGTCTTTGCTAAATGAAATTTCTTGCTTGAAGGAGAAGGATCATAATATTGTTAAAATTGATGTACCTTGTGAAAAGCATGTATTTGATTGTGATGAGAAAAATGCATTAATTGATAAAGTCAAGACTCTTGAGCATGATTGTGGTGAAAAAGATAAATTAATTAAATTGCTCAAAGAGAATGAATCAAATAATTTGCAAGAACTTGGTAGGGCTAAGGAATCTATTAAAATGTTAACAATAGGTGCTCAAAAATTAGATAAAATACTTGAAGGAGGTAAGTCATATGGTGATAAAAGAGGATTAGGCTATATTGATGAATGTTCTACACCTTCAAGTTCTAAAACAATCTTTGTTAAAGCATCCCCTATCTTGCCTAAATCTAACACATGTAAATTTGTATCTAAGTATGATAAATCTAGATTTGTGCCTATATGTCATTATTGTGTTGAAGGTCATATTAGACCTAAGTGCTTTAAATTGAAAAATTCTCAAAATATTCATTTAGGAAGAAAAGTTTCTCAAAATACAAAGTTTAACAATGTTTTAGAAAATAATTTTTCGAATAAAAATAGAATACACAAATTTAGTCCAAGAAATAAATTCTTGCATAATGTCGTTTGTTTCTCGTGTGGTAAGTTTGGACATAAAGATTATTCTTGTTACTTATCTAAATACAATGTCTTTAATATGAATGCAAATATGAAATGGATTCCTAAATTTGTGAATACTAACTTTCTAGGACCCAAACAAGTATGGGTACCAAAAGGTCAATTTTGAATATCTTTGTTTTTAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTCAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGGTAATGACTCTTGTACTCTCATTAAAAATGTATTGTTAGTTGATGGTTTAAAGCATGACTTACTTAGCATTAGTCAATTATGTGATAAAGGTTTTAGAGTTGTATTTGATAAGAATAATTGCATAATTGAAAATGCTAGTGATAGAAAAGTTTTGTTTGTAGGAAATAGAGACGATAATGTGTATACTATTGATTTGAATGATTGTCCTACAAATGATAAATGTCTTTCGGTTTTGATTGATAACTCTTGGCTATGGCATAGAAGACTAGGACATGCTAGTATGTACTTGATTTCAAATATTTCAAAAAATTCATTAGTGAGAGGTCTCCCTCAACTTAAATTTGAAAAAGATAAAATTTGTGACGCTTGTCAAATGGGTAAGCAAACTAAGTCTTCTTTCAAATCTAAAAATATGATTTCTACTACTAGACCTCTTCAACTACTCCATATAGACTTATTTGGCCCTTCTAAAATAGCTAGTTATGGAGGAAATTATTATGCTTTTGTGATAGTGGATGATTTTTCAAGATTTACTTGGGTTTTGATGATAAAACATAAGAATGATGTTTTGAAAAGATTTGCTAGTTTTGTAAAAAGAGTTCAAAATGAAAAAGGTTTTTTAATTACTAAAATTAGGAGTGACCATGGGGGAGAATTTAACAGTGTTGCCTTTGAAAAATTTTGTGAAGATAATGGTTTTTCTCATGAATTCTCCTTTCCAAGGACTCCTCAACAAAACGGTGTGGTTGAAAGGAAAAATCGTACTTTACAAGAATTTGCTAGATCAATGTTAAATGAGTATGATTTACCTAAATATTTTTGGGCGGAAGCCGTTAATACCGCTTGTTATATTTTAAATAGAGTTTTAATTAGACCTTCATTAAATAAAACTCCTTATGAACTCTGGCATAACAAAATTCCAAATGTTGGGTATTTCAAAGTTTTTGGTTGTAAATGTTTTATTTTGAACAACAAAGAAAAGCTTGGAAAGTTTGATTCAAAAACGGATATTGGTATTTTTCTTGGCTATTCATCTACTAGTAAAGCTTATAGAATTTTCAATAAGAGAACTTTAGTTATTGAAGAATCTATGCATGTGGTATTTGATGAATCTTGCAATAATATTTCTAATGAGTCTATTTGTAGTGATGATTTAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGGCAAAGAAATTGTTACGAGTAAAGAAGAGATGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGGTATGCCTTGTCTCATCCCAAGGACTTGATTCTTGGTGATCTCGAACAAGGTGTGAAAACTCGCTCTTCTATTAATTTATTTAATAATCTTGCTTTTGTTTCTCAAATTGAACCAAAAAGTCTTAAGGATGCCGAAAATGATGAGTTTTGGATTTTAGCCATGCAAGAAGAGCTAAATCAATTTGAAAGGAACAAAGTTTGGGAATTAGTCCATAGGCCATCTAATACTTCTATTATTGGAACCAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGGAATATCATTAGAAATAAAGCTAGGCTTGTAGCTCAAGGTTATTGTCAAGAGGAAGGCATAGATTATGAAGAAACTTTTGCACCCGTTGCTAGATTAGAAGCTATTAGAATGTTACTTGCTTTTGCTTCTTACAAAAATTTTGTATTATATCAAATGGATGTGAAAAGTGCATTTTTGAATGGTTATATTATGGAGGAAGTTTATGTAGAACAACCTCCCGGATTTGAAAATGTAGAATTTCCTCATCATGTCTATAAGTTGAAAAAGGCTCTTTATGGCTTAAAACAAGCTCCAAGAGCTTGGTATGATAGACTTAGTAATTTTCTTATTGGGAATGATTTTAAAATGGGCAAACTCGACACTACACTCTTTATTAAGATTAAAGAAAACGATATGCTATTAGTGCAAATATATGTGGATGATATCATATTTGGTTCTACTAATCCTTCTTTATGTGAAGAATTTTCTAAATGTATGCATAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACAACTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTGTATGTCTTTGTGCTAGATTTCAATCTTGTCCTAAGGAATCTCATTTACATGCCGTTAAGAGAATATTTAAATATTTGCTTGGAACTATTGATCTAGGATTGTGGTATCCTAGAAATGTTGAATTTAAATTGGTAGGATATTCTGATGCAGATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG

mRNA sequence

AAAACCCTATTCACCCCCCCTCTAGGGTTGCCATACCGATCCAACAATTGGTATCAGAGCAGGTTGCTCCTATAGATTTTTTATCTAAACTTTATTGTTCGAGCTTATGGCAAACCTACGTGTTAAAAATGGTTTTAGTGAAGGACAATCAACTTCTAGGCCACCTTATTTTGATGGAACAAATTATACATGTTGGAAAGCTAGGATGAAAATTTATTTGCAATCCGTTGATTATCAATTGTGGTTAAATGTTAGTAATGGTCCTTACATTCCAATAAAAATTGTTAATAATATTGAGGTGCCTAAATTAGAAAATGAATTTGATGAGCATGATATGAAAAAATGTTCTTTGAATGCTAGTGCTATCAATTGTCTGTATTGTGCCTTAAGTAATGATGAATTTAATAGAGTATGTATGTGTTCTTCGGCATATGAAATTTGGAAAACTCTTGAAGTAACTCATGAGGGAACCAATCAAGTTAAAGAAACAAAAATTAGCATGTTAGTTCATAATTATGAACTATTTAAAATGGAGGAAAATGAACCTATTGGTGATATGTTTACTAGATTTACTAATATTTTAAATGCTTTGAAAAATCTTGGAAAAGTATATTCTACCTCCGAAAATGTAAGAAAAATTCTTAGGTCTCTGCCTAAAAGTTGGGAGGCAAAAGTGACGGCGATTCAAGAAGCAAAGGATCTCACAAAGCTTCCTTTGGATGAACTCATTGGTTCTCTCATGACACATGAGATTACCATGAACGGGCACATGGAAGAAGAATCCAAAAAGAAGAAAAGTATAGCCCTAAAATCCATCAAAGTTGACTCTGAAGATGAGGACGTCCTTGATGAAGATGATGTCGCCTACTTCACACGTAAGTATAAAAATTTTATTAAAAGGAAGAAACAATTAAAAAAACATTTCACAAATCAAAAAGAGTCAAAAGGTGAAAAGAGCAAAAACGATGAGGTAATATGTTATGAATGTAAAAAGCCGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCATCTAAGAAATCCAAGAAGAAAGCAATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTTGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTCAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGGCAAAGAAATTGTTACGAGTAAAGAAGAGATGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGGTATGCCTTGTCTCATCCCAAGGACTTGATTCTTGGTGATCTCGAACAAGGTGTGAAAACTCGCTCTTCTATTAATTTATTTAATAATCTTGCTTTTGTTTCTCAAATTGAACCAAAAAGTCTTAAGGATGCCGAAAATGATGAGTTTTGGATTTTAGCCATGCAAGAAGAGCTAAATCAATTTGAAAGGAACAAAGTTTGGGAATTAGTCCATAGGCCATCTAATACTTCTATTATTGGAACCAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGGAATATCATTAGAAATAAAGCTAGGCTTGTAGCTCAAGGTTATTGTCAAGAGGAAGGCATAGATTATGAAGAAACTTTTGCACCCGTTGCTAGATTAGAAGCTATTAGAATGTTACTTGCTTTTGCTTCTTACAAAAATTTTGTATTATATCAAATGGATGTGAAAAGTGCATTTTTGAATGGTTATATTATGGAGGAAGTTTATGTAGAACAACCTCCCGGATTTGAAAATGTAGAATTTCCTCATCATGTCTATAAGTTGAAAAAGGCTCTTTATGGCTTAAAACAAGCTCCAAGAGCTTGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACAACTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTGATATTCTGATGCAGATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG

Coding sequence (CDS)

ATGGCAAACCTACGTGTTAAAAATGGTTTTAGTGAAGGACAATCAACTTCTAGGCCACCTTATTTTGATGGAACAAATTATACATGTTGGAAAGCTAGGATGAAAATTTATTTGCAATCCGTTGATTATCAATTGTGGTTAAATGTTAGTAATGGTCCTTACATTCCAATAAAAATTGTTAATAATATTGAGGTGCCTAAATTAGAAAATGAATTTGATGAGCATGATATGAAAAAATGTTCTTTGAATGCTAGTGCTATCAATTGTCTGTATTGTGCCTTAAGTAATGATGAATTTAATAGAGTATGTATGTGTTCTTCGGCATATGAAATTTGGAAAACTCTTGAAGTAACTCATGAGGGAACCAATCAAGTTAAAGAAACAAAAATTAGCATGTTAGTTCATAATTATGAACTATTTAAAATGGAGGAAAATGAACCTATTGGTGATATGTTTACTAGATTTACTAATATTTTAAATGCTTTGAAAAATCTTGGAAAAGTATATTCTACCTCCGAAAATGTAAGAAAAATTCTTAGGTCTCTGCCTAAAAGTTGGGAGGCAAAAGTGACGGCGATTCAAGAAGCAAAGGATCTCACAAAGCTTCCTTTGGATGAACTCATTGGTTCTCTCATGACACATGAGATTACCATGAACGGGCACATGGAAGAAGAATCCAAAAAGAAGAAAAGTATAGCCCTAAAATCCATCAAAGTTGACTCTGAAGATGAGGACGTCCTTGATGAAGATGATGTCGCCTACTTCACACGTAAGTATAAAAATTTTATTAAAAGGAAGAAACAATTAAAAAAACATTTCACAAATCAAAAAGAGTCAAAAGGTGAAAAGAGCAAAAACGATGAGGTAATATGTTATGAATGTAAAAAGCCGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCATCTAAGAAATCCAAGAAGAAAGCAATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTTGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTCAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGGCAAAGAAATTGTTACGAGTAAAGAAGAGATGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGGTATGCCTTGTCTCATCCCAAGGACTTGATTCTTGGTGATCTCGAACAAGGTGTGAAAACTCGCTCTTCTATTAATTTATTTAATAATCTTGCTTTTGTTTCTCAAATTGAACCAAAAAGTCTTAAGGATGCCGAAAATGATGAGTTTTGGATTTTAGCCATGCAAGAAGAGCTAAATCAATTTGAAAGGAACAAAGTTTGGGAATTAGTCCATAGGCCATCTAATACTTCTATTATTGGAACCAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGGAATATCATTAGAAATAAAGCTAGGCTTGTAGCTCAAGGTTATTGTCAAGAGGAAGGCATAGATTATGAAGAAACTTTTGCACCCGTTGCTAGATTAGAAGCTATTAGAATGTTACTTGCTTTTGCTTCTTACAAAAATTTTGTATTATATCAAATGGATGTGAAAAGTGCATTTTTGAATGGTTATATTATGGAGGAAGTTTATGTAGAACAACCTCCCGGATTTGAAAATGTAGAATTTCCTCATCATGTCTATAAGTTGAAAAAGGCTCTTTATGGCTTAAAACAAGCTCCAAGAGCTTGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACAACTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTGATATTCTGATGCAGATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG

Protein sequence

MANLRVKNGFSEGQSTSRPPYFDGTNYTCWKARMKIYLQSVDYQLWLNVSNGPYIPIKIVNNIEVPKLENEFDEHDMKKCSLNASAINCLYCALSNDEFNRVCMCSSAYEIWKTLEVTHEGTNQVKETKISMLVHNYELFKMEENEPIGDMFTRFTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELIGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQLKKHFTNQKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDEQEDEVCLKASKKNKWYLDSGCSRHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTIERNFGDLLVSDNGKEIVTSKEEMSLKEEGSSSMPKEWRYALSHPKDLILGDLEQGVKTRSSINLFNNLAFVSQIEPKSLKDAENDEFWILAMQEELNQFERNKVWELVHRPSNTSIIGTKWVFRNKMDENGNIIRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRACEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFSDILMQILPEAYLIVKVLVELVNFLVVP

Homology

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BLAST of CmaCh17G005280 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 137.9 bits (346), Expect = 4.7e-31
Identity = 73/149 (48.99%), Postives = 97/149 (65.10%), Query Frame = 1


Query: 501  WILAMQEELNQFERNKVWELVHRPSNTSIIGTKWVFRNKMDENGNIIRNKARLVAQGYCQ 560
            W  A+  ELN  + N  W +  RP N +I+ ++WVF  K +E GN IR KARLVA+G+ Q
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 561  EEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFE 620
            +  IDYEETFAPVAR+ + R +L+     N  ++QMDVK+AFLNG + EE+Y+  P G  
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGIS 1025

Query: 621  NVEFPHHVYKLKKALYGLKQAPRACEFEM 650
                  +V KL KA+YGLKQA R C FE+
Sbjct: 1026 CNS--DNVCKLNKAIYGLKQAAR-CWFEV 1051

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BLAST of CmaCh17G005280 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-30
Identity = 86/237 (36.29%), Postives = 133/237 (56.12%), Query Frame = 1


Query: 488  EPKSLKDA----ENDEFWILAMQEELNQFERNKVWELVHRPSNTSIIGTKWVFRNKMDEN 547
            EP+SLK+     E ++  + AMQEE+   ++N  ++LV  P     +  KWVF+ K D +
Sbjct: 810  EPESLKEVLSHPEKNQL-MKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGD 869

Query: 548  GNIIRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFL 607
              ++R KARLV +G+ Q++GID++E F+PV ++ +IR +L+ A+  +  + Q+DVK+AFL
Sbjct: 870  CKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFL 929

Query: 608  NGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRACEFEMSMMGELSFFLG--- 667
            +G + EE+Y+EQP GFE     H V KL K+LYGLKQAPR    +     +   +L    
Sbjct: 930  HGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYS 989

Query: 668  ---LQIKQLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDI 715
               +  K+     FI    Y  D+L   K + G IA+     S   D  + G +  I
Sbjct: 990  DPCVYFKRFSENNFIILLLYVDDMLIVGK-DKGLIAKLKGDLSKSFDMKDLGPAQQI 1044

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BLAST of CmaCh17G005280 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-19
Identity = 56/122 (45.90%), Postives = 76/122 (62.30%), Query Frame = 1


Query: 470 KTRSSINLFN---NLAFVSQI--EPKSLKDAENDEFWILAMQEELNQFERNKVWELVHRP 529
           ++++ IN  N   +L   + I  EPKS+  A  D  W  AMQEEL+   RNK W LV  P
Sbjct: 4   RSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPP 63

Query: 530 SNTSIIGTKWVFRNKMDENGNIIRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLA 587
            N +I+G KWVF+ K+  +G + R KARLVA+G+ QEEGI + ET++PV R   IR +L 
Sbjct: 64  VNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123

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BLAST of CmaCh17G005280 vs. Swiss-Prot
Match: YM14B_YEAST (Transposon Ty1-MR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-MR2 PE=3 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 8.6e-09
Identity = 48/159 (30.19%), Postives = 78/159 (49.06%), Query Frame = 1


Query: 493  KDAENDEFWILAMQEELNQFERNKVWELVHRPSNTSI-----IGTKWVFRNKMDENGNII 552
            KD +  E +I A  +E+NQ  + K W+         I     I + ++F  K D      
Sbjct: 1242 KDIKEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT---- 1301

Query: 553  RNKARLVAQGYCQEEGIDYEETFAPVARLE-----AIRMLLAFASYKNFVLYQMDVKSAF 612
             +KAR VA+G      I + +T+ P  +       A+   L+ A   N+ + Q+D+ SA+
Sbjct: 1302 -HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 1361

Query: 613  LNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQA 642
            L   I EE+Y+  PP   ++     + +LKK+LYGLKQ+
Sbjct: 1362 LYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQS 1387

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BLAST of CmaCh17G005280 vs. Swiss-Prot
Match: YE12B_YEAST (Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-ER2 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.6e-09
Identity = 48/159 (30.19%), Postives = 78/159 (49.06%), Query Frame = 1


Query: 493  KDAENDEFWILAMQEELNQFERNKVWELVHRPSNTSI-----IGTKWVFRNKMDENGNII 552
            KD +  E +I A  +E+NQ  + K W+         I     I + ++F  K D      
Sbjct: 1242 KDIKEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT---- 1301

Query: 553  RNKARLVAQGYCQEEGIDYEETFAPVARLE-----AIRMLLAFASYKNFVLYQMDVKSAF 612
             +KAR VA+G      I + +T+ P  +       A+   L+ A   N+ + Q+D+ SA+
Sbjct: 1302 -HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 1361

Query: 613  LNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQA 642
            L   I EE+Y+  PP   ++     + +LKK+LYGLKQ+
Sbjct: 1362 LYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQS 1387

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BLAST of CmaCh17G005280 vs. TrEMBL
Match: A5AVS9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021518 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 4.6e-118
Identity = 214/298 (71.81%), Postives = 250/298 (83.89%), Query Frame = 1


Query: 441 EGSSSMPKEWRYALSHPKDLILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDE 500
           E S  +PK+W++ ++HP+D I+G+    V+TRSS+ N+ NNLAF+S IEPK++KDA  DE
Sbjct: 21  ESSQDLPKDWKFVINHPQDQIIGNPSSRVRTRSSLRNICNNLAFISHIEPKNIKDALVDE 80

Query: 501 FWILAMQEELNQFERNKVWELVHRPSNTSIIGTKWVFRNKMDENGNIIRNKARLVAQGYC 560
            W+  MQEELNQFER++VWELV RP N S+IGT+WVFR KMDENG IIRNKARLVAQG+ 
Sbjct: 81  NWMTVMQEELNQFERSEVWELVPRPHNQSVIGTRWVFRIKMDENGIIIRNKARLVAQGFN 140

Query: 561 QEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGF 620
           QEEGIDYEETFAPVARLEAIRMLLAFA +K+FVLYQMDVKSAFLNG+I EEVYVEQPP F
Sbjct: 141 QEEGIDYEETFAPVARLEAIRMLLAFACFKDFVLYQMDVKSAFLNGFINEEVYVEQPPSF 200

Query: 621 ENVEFPHHVYKLKKALYGLKQAPRACEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTK 680
           ++  FP+HV++LK ALYGLKQAPRACEFEMSMMGEL+FFLGLQIKQLK G FINQ KY +
Sbjct: 201 QSFNFPNHVFRLKNALYGLKQAPRACEFEMSMMGELNFFLGLQIKQLKEGTFINQAKYIR 260

Query: 681 DLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFS 738
           D LKRF     K  +TPMS+S KLD DEKGK ++   YRGMIGSLL LTASRPDIM+S
Sbjct: 261 DPLKRFNMEEAKTMKTPMSSSIKLDMDEKGKPINSTMYRGMIGSLLNLTASRPDIMYS 318

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BLAST of CmaCh17G005280 vs. TrEMBL
Match: A5AH07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035911 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 7.6e-113
Identity = 215/321 (66.98%), Postives = 254/321 (79.13%), Query Frame = 1


Query: 433 KEEMSLKEEGSSSMPKEWRYALSHPK---DLILGDLEQGVKTRSSI-NLFNNLAFVSQIE 492
           +++   +E G     +E   AL  P+   D I+G+   GV+TRSS+ N+ NNLAF+SQ E
Sbjct: 40  EDKRQQEESGEDPKKEESPLALPPPQQVQDQIIGNPSSGVRTRSSLKNICNNLAFISQTE 99

Query: 493 PKSLKDAENDEFWILAMQEELNQFERNKVWELVHRPSNTSIIGTKWVFRNKMDENGNIIR 552
           PK++KDA  DE W++AMQEELN+FER++VWELV RPSN S+IGTKWVFRNKM+EN  I+R
Sbjct: 100 PKNIKDAIVDENWMIAMQEELNKFERSEVWELVPRPSNQSVIGTKWVFRNKMNENDIIVR 159

Query: 553 NKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIM 612
           NKARLVAQGY QEEGIDYE+TFAPVARLEAIRML AFA +K+F+LYQMDVKSAFLNG+I 
Sbjct: 160 NKARLVAQGYNQEEGIDYEKTFAPVARLEAIRMLRAFACFKDFILYQMDVKSAFLNGFIN 219

Query: 613 EEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRA------------CEFEMSMMGELS 672
           EEVYVEQPPGF++  FP+HV+KLKK LYGLKQAP+A             EFEMSMMGEL+
Sbjct: 220 EEVYVEQPPGFQSFNFPNHVFKLKKTLYGLKQAPKAWYERLNFSKCMHSEFEMSMMGELN 279

Query: 673 FFLGLQIKQLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKA 732
           FFLGLQIKQLK G FINQ KY KDLLKRF     K+ +TPMS+S KLD DE+GKS+D   
Sbjct: 280 FFLGLQIKQLKEGTFINQAKYIKDLLKRFNMEEAKVMKTPMSSSIKLDMDERGKSIDSTM 339

Query: 733 YRGMIGSLLYLTASRPDIMFS 738
           YRGMIGSLLYLTASRPD M+S
Sbjct: 340 YRGMIGSLLYLTASRPDFMYS 360

[Close]

BLAST of CmaCh17G005280 vs. TrEMBL
Match: A5C4X7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018629 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.4e-106
Identity = 200/301 (66.45%), Postives = 242/301 (80.40%), Query Frame = 1


Query: 441 EGSSSMPKEWRYALSHPKDLILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDE 500
           E S  +PKE ++ ++HP+D I+G+   GV+TRSS+ N+FNNLAF+SQIEPK++ +  +DE
Sbjct: 37  ESSQDLPKELKFVINHPQDQIIGNPSSGVRTRSSLRNIFNNLAFISQIEPKNINNVLDDE 96

Query: 501 FWILAMQEELNQFERNKVWELVHRPSNTSIIGTKWVFRNKMDENGNIIRNKARLVAQGYC 560
            W++AMQEELNQFER++VWEL  RPSN S+IGT+WVFRNK+DENG I+RNKARLVAQG+ 
Sbjct: 97  NWMIAMQEELNQFERSEVWELAPRPSNQSVIGTRWVFRNKIDENGIIVRNKARLVAQGFN 156

Query: 561 QEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGF 620
           QE+GIDYEETFAPV RLEAIRMLLAFA +K+FVLYQM VK+AFLNG+I EEVYVEQPPGF
Sbjct: 157 QEKGIDYEETFAPVVRLEAIRMLLAFACFKDFVLYQMYVKNAFLNGFINEEVYVEQPPGF 216

Query: 621 ENVEFPHHVYKLKKALYGLKQAPRACEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTK 680
           ++  FP+HV+KLK+ALYGLKQAPRA    +S      F L +   QLK G FINQ KY +
Sbjct: 217 QSFNFPNHVFKLKRALYGLKQAPRAWYERLS-----KFLLKM---QLKEGXFINQAKYIR 276

Query: 681 DLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFSDI 740
           DLLKRF     K  +TPMS+S KLDKDEK KS+    YRGMIGSLLYLTASRPDIM+S  
Sbjct: 277 DLLKRFNMEEAKTMKTPMSSSIKLDKDEKSKSIYSTMYRGMIGSLLYLTASRPDIMYSVF 329

[Close]

BLAST of CmaCh17G005280 vs. TrEMBL
Match: A5BK23_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044238 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.4e-103
Identity = 197/323 (60.99%), Postives = 239/323 (73.99%), Query Frame = 1


Query: 441 EGSSSMPKEWRYALSHPKDLILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDE 500
           E S  +PK+W++ ++HP+D I+G+   GV+TRSS+ N+ NN AF+SQIEPK++ DA  DE
Sbjct: 104 ESSQDLPKDWKFVINHPQDQIIGNSSSGVRTRSSLRNICNNFAFISQIEPKNINDALVDE 163

Query: 501 FWILAMQEELNQFERNKVWELVHRPSNTSIIGTKWVFRNKMDENGNIIRNKARLVAQGYC 560
            W++AMQEELNQFERN+VWELV RPSN S+IGT+WVFRNKMDEN  I+RNK+RLVAQG+ 
Sbjct: 164 NWMIAMQEELNQFERNEVWELVARPSNQSVIGTRWVFRNKMDENXIILRNKSRLVAQGFN 223

Query: 561 QEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGF 620
           QEEGIDYEETFAPVARLEAIRMLLAFA +K+FVLYQMDVKS FLN +I E VYVE PPGF
Sbjct: 224 QEEGIDYEETFAPVARLEAIRMLLAFACFKDFVLYQMDVKSXFLNDFINEXVYVEXPPGF 283

Query: 621 ENVEFPHHVYKLKKALYGLKQAPRACEFEMS--------MMGELSFFLGLQIKQ------ 680
           ++V FP+HV+KLKK LYGLK+APRA    +S         MG++   L ++ K+      
Sbjct: 284 QSVNFPNHVFKLKKTLYGLKEAPRAXNERLSKFLXKKGFKMGKIDTTLFIKTKENDMLLV 343

Query: 681 -----------LKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDI 738
                         G FINQ KY +DLLKRF     K  + PMS+S KLDKDEK KS+D 
Sbjct: 344 QIYVDDIIFGATNEGTFINQAKYIRDLLKRFNMEEAKTMKNPMSSSIKLDKDEKXKSIDS 403

[Close]

BLAST of CmaCh17G005280 vs. TrEMBL
Match: A5C8K0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 7.1e-103
Identity = 202/318 (63.52%), Postives = 243/318 (76.42%), Query Frame = 1


Query: 451  RYALSHPKDLILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDEFWILAMQEEL 510
            ++ ++HP+D I+G+   GV+TRSS+ N+ NNLAF+SQIEPK++KDA  DE W++AMQ+EL
Sbjct: 924  KFVINHPQDQIIGNPLSGVRTRSSLRNICNNLAFISQIEPKNIKDAIVDENWMIAMQKEL 983

Query: 511  NQFERNKVWELVHRPSNTSIIGTKWVFRNKMDENGNIIRNKARLVAQGYCQEEGIDYEET 570
            NQFER++VWELV RPSN S+IGTKWVFRNKMDENG I+RNKARLVAQGY QEEGIDYEET
Sbjct: 984  NQFERSEVWELVPRPSNQSVIGTKWVFRNKMDENGIIVRNKARLVAQGYNQEEGIDYEET 1043

Query: 571  FAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVY 630
            FAPVARLEAIRMLLAFA +K+F+LYQMDVKSAFLNG+I EE+YVEQPPGF++  FP+HV+
Sbjct: 1044 FAPVARLEAIRMLLAFACFKDFILYQMDVKSAFLNGFINEEIYVEQPPGFQSFNFPNHVF 1103

Query: 631  KLKKALYGLKQAPRACEFEMS-MMGELSFFLG-----LQIKQLKNGIFINQ--------- 690
            KLKKALYGLKQAPRA    +S  + + SF +G     L IK  +N + + Q         
Sbjct: 1104 KLKKALYGLKQAPRAWYERLSKFLLKKSFKMGKIDTTLFIKTKENDMLLVQIYVDDITFG 1163

Query: 691  ---------------EKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRG 738
                            KY KDLLKRF     K+ +TPMS+S KLD DEKGKS+D   YRG
Sbjct: 1164 ATNDSLCEDFSKCMHTKYIKDLLKRFNMGEAKVMKTPMSSSIKLDMDEKGKSIDSTMYRG 1223

[Close]

BLAST of CmaCh17G005280 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 143.3 bits (360), Expect = 6.3e-34
Identity = 72/172 (41.86%), Postives = 112/172 (65.12%), Query Frame = 1


Query: 488 EPKSLKDAENDEFWILAMQEELNQFERNKVWELVHRPSNTSIIGTKWVFRNKMDENGNII 547
           EP +  +A+    W  AM +E+   E    WE+   P N   IG KWV++ K + +G I 
Sbjct: 85  EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144

Query: 548 RNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYI 607
           R KARLVA+GY Q+EGID+ ETF+PV +L +++++LA ++  NF L+Q+D+ +AFLNG +
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204

Query: 608 MEEVYVEQPPGFENVEF----PHHVYKLKKALYGLKQAPRA--CEFEMSMMG 654
            EE+Y++ PPG+   +     P+ V  LKK++YGLKQA R    +F ++++G
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIG 256

[Close]

BLAST of CmaCh17G005280 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 100.1 bits (248), Expect = 6.1e-21
Identity = 56/122 (45.90%), Postives = 76/122 (62.30%), Query Frame = 1


Query: 470 KTRSSINLFN---NLAFVSQI--EPKSLKDAENDEFWILAMQEELNQFERNKVWELVHRP 529
           ++++ IN  N   +L   + I  EPKS+  A  D  W  AMQEEL+   RNK W LV  P
Sbjct: 4   RSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPP 63

Query: 530 SNTSIIGTKWVFRNKMDENGNIIRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLA 587
            N +I+G KWVF+ K+  +G + R KARLVA+G+ QEEGI + ET++PV R   IR +L 
Sbjct: 64  VNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123

[Close]

BLAST of CmaCh17G005280 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 7.0e-09
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1


Query: 647 FEMSMMGELSFFLGLQIKQLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKD 706
           F M  +G + +FLG+QIK   +G+F++Q KY + +L     N G +   PMST   L  +
Sbjct: 31  FSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILN----NAGMLDCKPMSTPLPLKLN 90

Query: 707 EK---GKSVDIKAYRGMIGSLLYLTASRPDIMFS-DILMQILPEAYL 750
                 K  D   +R ++G+L YLT +RPDI ++ +I+ Q + E  L
Sbjct: 91  SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTL 133

[Close]

BLAST of CmaCh17G005280 vs. NCBI nr
Match: gi|778730802|ref|XP_011659859.1| (PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus])

HSP 1 Score: 550.8 bits (1418), Expect = 3.7e-153
Identity = 279/356 (78.37%), Postives = 311/356 (87.36%), Query Frame = 1


Query: 1   MANLRVKNGFSEGQSTSRPPYFDGTNYTCWKARMKIYLQSVDYQLWLNVSNGPYIPIKIV 60
           MANL + NG  EGQSTSRPPYFDG+NY  WKARMKIYLQS+DY LWL V+ GPY+P+K V
Sbjct: 1   MANL-LANGIVEGQSTSRPPYFDGSNYAYWKARMKIYLQSIDYNLWLIVAKGPYVPMKNV 60

Query: 61  NNIEVPKLENEFDEHDMKKCSLNASAINCLYCALSNDEFNRVCMCSSAYEIWKTLEVTHE 120
           +N++ PKLE E+DE++MKKCS NA AINCLYCALS DEFNR+ MCSSA EIW TLE+THE
Sbjct: 61  DNVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHE 120

Query: 121 GTNQVKETKISMLVHNYELFKMEENEPIGDMFTRFTNILNALKNLGKVYSTSENVRKILR 180
           GTNQVKE+KISM VHNYELFKM+ NE I DMFTRFTNI+NALK LGKVY+TSENVRKILR
Sbjct: 121 GTNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKILR 180

Query: 181 SLPKSWEAKVTAIQEAKDLTKLPLDELIGSLMTHEITMNGHMEEESKKKKSIALK--SIK 240
           SLPK+WEAKVTAIQEAKDLTKLPL+ELIGSLMTHEI M  H+E+ESKKKKSIALK  S++
Sbjct: 181 SLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLE 240

Query: 241 VDSEDEDVLDEDDVAYFTRKYKNFIKRKKQLKKHFTNQKESKGEKSKNDEVICYECKKPG 300
           VD EDED LDEDD+AYF+RKYKNFIKRKK  KKH + QKESKGEKSK DEVICYECK+ G
Sbjct: 241 VDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEKSKKDEVICYECKRSG 300

Query: 301 HIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE 355
           HIRTDCPLLKSSKKSKKKAMKATWDDS ES S   EE+AN   MAHSDK+DE +D+
Sbjct: 301 HIRTDCPLLKSSKKSKKKAMKATWDDSSESES-EVEEMANLGLMAHSDKDDEHDDK 354

[Close]

BLAST of CmaCh17G005280 vs. NCBI nr
Match: gi|778665012|ref|XP_011648465.1| (PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus])

HSP 1 Score: 550.8 bits (1418), Expect = 3.7e-153
Identity = 279/356 (78.37%), Postives = 311/356 (87.36%), Query Frame = 1


Query: 1   MANLRVKNGFSEGQSTSRPPYFDGTNYTCWKARMKIYLQSVDYQLWLNVSNGPYIPIKIV 60
           MANL + NG  EGQSTSRPPYFDG+NY  WKARMKIYLQS+DY LWL V+ GPY+P+K V
Sbjct: 1   MANL-LANGIVEGQSTSRPPYFDGSNYAYWKARMKIYLQSIDYNLWLIVAKGPYVPMKNV 60

Query: 61  NNIEVPKLENEFDEHDMKKCSLNASAINCLYCALSNDEFNRVCMCSSAYEIWKTLEVTHE 120
           +N++ PKLE E+DE++MKKCS NA AINCLYCALS DEFNR+ MCSSA EIW TLE+THE
Sbjct: 61  DNVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHE 120

Query: 121 GTNQVKETKISMLVHNYELFKMEENEPIGDMFTRFTNILNALKNLGKVYSTSENVRKILR 180
           GTNQVKE+KISM VHNYELFKM+ NE I DMFTRFTNI+NALK LGKVY+TSENVRKILR
Sbjct: 121 GTNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKILR 180

Query: 181 SLPKSWEAKVTAIQEAKDLTKLPLDELIGSLMTHEITMNGHMEEESKKKKSIALK--SIK 240
           SLPK+WEAKVTAIQEAKDLTKLPL+ELIGSLMTHEI M  H+E+ESKKKKSIALK  S++
Sbjct: 181 SLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLE 240

Query: 241 VDSEDEDVLDEDDVAYFTRKYKNFIKRKKQLKKHFTNQKESKGEKSKNDEVICYECKKPG 300
           VD EDED LDEDD+AYF+RKYKNFIKRKK  KKH + QKESKGEKSK DEVICYECK+ G
Sbjct: 241 VDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEKSKKDEVICYECKRSG 300

Query: 301 HIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE 355
           HIRTDCPLLKSSKKSKKKAMKATWDDS ES S   EE+AN   MAHSDK+DE +D+
Sbjct: 301 HIRTDCPLLKSSKKSKKKAMKATWDDSSESES-EVEEMANLGLMAHSDKDDEHDDK 354

[Close]

BLAST of CmaCh17G005280 vs. NCBI nr
Match: gi|778688574|ref|XP_011652782.1| (PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus])

HSP 1 Score: 548.5 bits (1412), Expect = 1.8e-152
Identity = 278/356 (78.09%), Postives = 310/356 (87.08%), Query Frame = 1


Query: 1   MANLRVKNGFSEGQSTSRPPYFDGTNYTCWKARMKIYLQSVDYQLWLNVSNGPYIPIKIV 60
           MANL + NG  EGQSTSRPPYFDG+NY  WKARMKIYLQS+DY LWL V+ GPY+P+K V
Sbjct: 1   MANL-LANGIVEGQSTSRPPYFDGSNYAYWKARMKIYLQSIDYNLWLIVAKGPYVPMKNV 60

Query: 61  NNIEVPKLENEFDEHDMKKCSLNASAINCLYCALSNDEFNRVCMCSSAYEIWKTLEVTHE 120
           +N++ PKLE E+DE++MKKCS NA AINCLYCALS DEFNR+ MCSSA EIW TLE+THE
Sbjct: 61  DNVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHE 120

Query: 121 GTNQVKETKISMLVHNYELFKMEENEPIGDMFTRFTNILNALKNLGKVYSTSENVRKILR 180
           GTNQVKE+KISM VHNYELFKM+ NE I DMFTRFTNI+N LK LGKVY+TSENVRKILR
Sbjct: 121 GTNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINDLKGLGKVYTTSENVRKILR 180

Query: 181 SLPKSWEAKVTAIQEAKDLTKLPLDELIGSLMTHEITMNGHMEEESKKKKSIALK--SIK 240
           SLPK+WEAKVTAIQEAKDLTKLPL+ELIGSLMTHEI M  H+E+ESKKKKSIALK  S++
Sbjct: 181 SLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLE 240

Query: 241 VDSEDEDVLDEDDVAYFTRKYKNFIKRKKQLKKHFTNQKESKGEKSKNDEVICYECKKPG 300
           VD EDED LDEDD+AYF+RKYKNFIKRKK  KKH + QKESKGEKSK DEVICYECK+ G
Sbjct: 241 VDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEKSKKDEVICYECKRSG 300

Query: 301 HIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE 355
           HIRTDCPLLKSSKKSKKKAMKATWDDS ES S   EE+AN   MAHSDK+DE +D+
Sbjct: 301 HIRTDCPLLKSSKKSKKKAMKATWDDSSESES-EVEEMANLGLMAHSDKDDEHDDK 354

[Close]

BLAST of CmaCh17G005280 vs. NCBI nr
Match: gi|778730824|ref|XP_011659862.1| (PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus])

HSP 1 Score: 481.5 bits (1238), Expect = 2.8e-132
Identity = 255/356 (71.63%), Postives = 284/356 (79.78%), Query Frame = 1


Query: 1   MANLRVKNGFSEGQSTSRPPYFDGTNYTCWKARMKIYLQSVDYQLWLNVSNGPYIPIKIV 60
           MANL + NG  EGQSTSRPPYFDG+NY  WKARMKIYLQS+DY LWL V+ GPY+P+K V
Sbjct: 1   MANL-LANGIVEGQSTSRPPYFDGSNYAYWKARMKIYLQSIDYNLWLIVAKGPYVPMKNV 60

Query: 61  NNIEVPKLENEFDEHDMKKCSLNASAINCLYCALSNDEFNRVCMCSSAYEIWKTLEVTHE 120
           +N++ PKLE E                              + MCSSA EIW TLE+THE
Sbjct: 61  DNVDTPKLEEE------------------------------ISMCSSAQEIWNTLEITHE 120

Query: 121 GTNQVKETKISMLVHNYELFKMEENEPIGDMFTRFTNILNALKNLGKVYSTSENVRKILR 180
           GTNQVKE+KISM VHNYELFKM+ NE I DMFTRFTNI+NALK LGKVY+TSENVRKILR
Sbjct: 121 GTNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKILR 180

Query: 181 SLPKSWEAKVTAIQEAKDLTKLPLDELIGSLMTHEITMNGHMEEESKKKKSIALK--SIK 240
           SLPK+WEAKVTAIQEAKDLTKLPL+ELIGSLMTHEI M  H+E+ESKKKKSIALK  S++
Sbjct: 181 SLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLE 240

Query: 241 VDSEDEDVLDEDDVAYFTRKYKNFIKRKKQLKKHFTNQKESKGEKSKNDEVICYECKKPG 300
           VD EDED LDEDD+AYF+RKYKNFIKRKK  KKH + QKESKGEKSK DEVICYECK+ G
Sbjct: 241 VDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEKSKKDEVICYECKRSG 300

Query: 301 HIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE 355
           HIRTDCPLLKSSKKSKKKAMKATWDDS ES S   EE+AN   MAHSDK+DE +D+
Sbjct: 301 HIRTDCPLLKSSKKSKKKAMKATWDDSSESES-EVEEMANLGLMAHSDKDDEHDDK 324

[Close]

BLAST of CmaCh17G005280 vs. NCBI nr
Match: gi|147778546|emb|CAN62895.1| (hypothetical protein VITISV_021518 [Vitis vinifera])

HSP 1 Score: 433.7 bits (1114), Expect = 6.6e-118
Identity = 214/298 (71.81%), Postives = 250/298 (83.89%), Query Frame = 1


Query: 441 EGSSSMPKEWRYALSHPKDLILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDE 500
           E S  +PK+W++ ++HP+D I+G+    V+TRSS+ N+ NNLAF+S IEPK++KDA  DE
Sbjct: 21  ESSQDLPKDWKFVINHPQDQIIGNPSSRVRTRSSLRNICNNLAFISHIEPKNIKDALVDE 80

Query: 501 FWILAMQEELNQFERNKVWELVHRPSNTSIIGTKWVFRNKMDENGNIIRNKARLVAQGYC 560
            W+  MQEELNQFER++VWELV RP N S+IGT+WVFR KMDENG IIRNKARLVAQG+ 
Sbjct: 81  NWMTVMQEELNQFERSEVWELVPRPHNQSVIGTRWVFRIKMDENGIIIRNKARLVAQGFN 140

Query: 561 QEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGF 620
           QEEGIDYEETFAPVARLEAIRMLLAFA +K+FVLYQMDVKSAFLNG+I EEVYVEQPP F
Sbjct: 141 QEEGIDYEETFAPVARLEAIRMLLAFACFKDFVLYQMDVKSAFLNGFINEEVYVEQPPSF 200

Query: 621 ENVEFPHHVYKLKKALYGLKQAPRACEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTK 680
           ++  FP+HV++LK ALYGLKQAPRACEFEMSMMGEL+FFLGLQIKQLK G FINQ KY +
Sbjct: 201 QSFNFPNHVFRLKNALYGLKQAPRACEFEMSMMGELNFFLGLQIKQLKEGTFINQAKYIR 260

Query: 681 DLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFS 738
           D LKRF     K  +TPMS+S KLD DEKGK ++   YRGMIGSLL LTASRPDIM+S
Sbjct: 261 DPLKRFNMEEAKTMKTPMSSSIKLDMDEKGKPINSTMYRGMIGSLLNLTASRPDIMYS 318

The following BLAST results are available for this feature:

BLAST of CmaCh17G005280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COPIA_DROME	4.7e-31	48.99	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
POLX_TOBAC	1.0e-30	36.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
M820_ARATH	1.1e-19	45.90	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0...	[more]
YM14B_YEAST	8.6e-09	30.19	Transposon Ty1-MR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
YE12B_YEAST	8.6e-09	30.19	Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of CmaCh17G005280 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AVS9_VITVI	4.6e-118	71.81	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021518 PE=4 SV=1	[more]
A5AH07_VITVI	7.6e-113	66.98	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035911 PE=4 SV=1	[more]
A5C4X7_VITVI	1.4e-106	66.45	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018629 PE=4 SV=1	[more]
A5BK23_VITVI	2.4e-103	60.99	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044238 PE=4 SV=1	[more]
A5C8K0_VITVI	7.1e-103	63.52	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1	[more]

BLAST of CmaCh17G005280 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	6.3e-34	41.86	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	6.1e-21	45.90	ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	7.0e-09	35.51	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CmaCh17G005280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730802\|ref\|XP_011659859.1\|	3.7e-153	78.37	PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]	[more]
gi\|778665012\|ref\|XP_011648465.1\|	3.7e-153	78.37	PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus]	[more]
gi\|778688574\|ref\|XP_011652782.1\|	1.8e-152	78.09	PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus]	[more]
gi\|778730824\|ref\|XP_011659862.1\|	2.8e-132	71.63	PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus]	[more]
gi\|147778546\|emb\|CAN62895.1\|	6.6e-118	71.81	hypothetical protein VITISV_021518 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC
IPR013103	RVT_2

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G005280.1	CmaCh17G005280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 281..312 score: 3.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 290..305 score: 8.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 290..306 score: 0
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 291..305 score: 9
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 275..311 score: 1.0
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 515..644 score: 1.6E-56coord: 646..698 score: 8.8
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 18..737 score: 8.6E
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 18..737 score: 8.6E
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 83..219 score: 5.4
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 514..736 score: 3.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G005280	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G005280	Cucurbita moschata (Rifu)	cmacmoB368
CmaCh17G005280	Wild cucumber (PI 183967)	cmacpiB376
CmaCh17G005280	Cucumber (Chinese Long) v2	cmacuB372
CmaCh17G005280	Melon (DHL92) v3.5.1	cmameB313
CmaCh17G005280	Watermelon (Charleston Gray)	cmawcgB328
CmaCh17G005280	Watermelon (97103) v1	cmawmB351
CmaCh17G005280	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G005280	Cucurbita pepo (Zucchini)	cmacpeB381
CmaCh17G005280	Bottle gourd (USVL1VR-Ls)	cmalsiB331
CmaCh17G005280	Cucumber (Gy14) v2	cgybcmaB756
CmaCh17G005280	Melon (DHL92) v3.6.1	cmamedB365
CmaCh17G005280	Silver-seed gourd	carcmaB0105
CmaCh17G005280	Cucumber (Chinese Long) v3	cmacucB0445
CmaCh17G005280	Watermelon (97103) v2	cmawmbB377
CmaCh17G005280	Wax gourd	cmawgoB0457
CmaCh17G005280	Cucurbita maxima (Rimu)	cmacmaB375
CmaCh17G005280	Cucumber (Gy14) v1	cgycmaB0296