CmaCh17G005260 (gene) Cucurbita maxima (Rimu)

NameCmaCh17G005260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCma_Chr17 : 3657868 .. 3659091 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGGTCTTGCGTCGCCTTGGAAGCGTCCTCCATTCGGAAGGTATTTGCATGAGTCAATAACAAGGTGAATAAAGAAAGTATTTATAGTAAGTGGGAGAAGGAAGTATGTCAACACCTCCTATGGTCTCTACCACTAGGTTGCACCGTGAGATTCCCATGTTCCATTTGCATGTTGCCCTAGAGCAACTATCCATTCAGAGGGTCGTAACATGGGAGTCGAAACAACGCAAACTCCATAAATGGATAGGATTTCTTAGGTCCGTTTCCAACTTTGGCTTTTTCATTCGATAGAGTTGTTGGGACCGATCTCTGAGGTTTAAAATGGCGGGTCACACTTACAAAGAATTACTAAGAGTTAGTATATTCTTGATCAAAATAGCGATAACTAAAAACACTATAGGAACAAGAGTTATTATGGGATTAGTGTTTAAAGTAAAAAATGTCTTGGTTTAGTGAATGAGTGATTGACTGCCCCTCGATAGCAGTTGCTCTAACTCACTAAAGTATTGTTGCAAATTAATAATTTTTTGGTACATTATTACATTTGCTAAAATTGATTGGATTAAACAGGATTAAGTCAAATCACTAATAGAATTTTCTTTGTATCACACAGCATGACAAACTCAATAGTACAATAACTCGCTTCTGAGAAATTAAACGGCGACAATTACGTAACTTGGAAATCAAACCTAAACACAATACTGGTTATTGATGATTTAAGGTTTGTTTTAATTGAGGAATGTCCTCCAAACACCAGCTCAAATGCAAACCGAACAGTTCGGGATGCGTATGACAAATGGATAAAGGAAAATGACAAATCCCGAGTGTACATTCTAGCTAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGAGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCATCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGTCGTATGAAAGAAGGGACCTCAGTTAGAGAACTTGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCAAAGAGCTTCTTCCAGTTCCGCACAAATGTGGTAATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAATCCCTCTTAACGAACAAGGGCGACTAA

mRNA sequence

ATGCTCGGTCTTGCGTCGCCTTGGAAGCGTCCTCCATTCGGAAGGTTTGTTTTAATTGAGGAATGTCCTCCAAACACCAGCTCAAATGCAAACCGAACAGTTCGGGATGCGTATGACAAATGGATAAAGGAAAATGACAAATCCCGAGTGTACATTCTAGCTAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGAGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCATCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGTCGTATGAAAGAAGGGACCTCAGTTAGAGAACTTGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCAAAGAGCTTCTTCCAGTTCCGCACAAATGTGGTAATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAATCCCTCTTAACGAACAAGGGCGACTAA

Coding sequence (CDS)

ATGCTCGGTCTTGCGTCGCCTTGGAAGCGTCCTCCATTCGGAAGGTTTGTTTTAATTGAGGAATGTCCTCCAAACACCAGCTCAAATGCAAACCGAACAGTTCGGGATGCGTATGACAAATGGATAAAGGAAAATGACAAATCCCGAGTGTACATTCTAGCTAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGAGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCATCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGTCGTATGAAAGAAGGGACCTCAGTTAGAGAACTTGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCAAAGAGCTTCTTCCAGTTCCGCACAAATGTGGTAATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAATCCCTCTTAACGAACAAGGGCGACTAA

Protein sequence

MLGLASPWKRPPFGRFVLIEECPPNTSSNANRTVRDAYDKWIKENDKSRVYILASISDVLAKKHDVMSTAKEIMESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKGD
BLAST of CmaCh17G005260 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.7e-58
Identity = 116/165 (70.30%), Postives = 139/165 (84.24%), Query Frame = 1

Query: 15  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKSRVYILASISDVLAKKHDVMSTAKEIM 74
           RFVL EECP   + NANRTVR+AYD+W+K NDK+RVYILAS++DVLAKKHD ++TAK IM
Sbjct: 36  RFVLTEECPQAPALNANRTVREAYDRWVKANDKARVYILASMTDVLAKKHDSIATAKGIM 95

Query: 75  ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEAVIDEKSQV 134
           +SL+ MFGQPS+SLRHEAIK+IY  RMKEGTSVRE VLDMM+HFN+AE N   IDE +QV
Sbjct: 96  DSLREMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQV 155

Query: 135 SFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG 180
           SFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L  +KG
Sbjct: 156 SFILQSLPKSFVPFQTNASLNKIEFNLTTLLNELQRFQNLTLSKG 200

BLAST of CmaCh17G005260 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.5e-38
Identity = 84/127 (66.14%), Postives = 103/127 (81.10%), Query Frame = 1

Query: 15  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKSRVYILASISDVLAKKHDVMSTAKEIM 74
           RF+L EEC    + NANRTVR+AYD+W K NDK+ VYILAS++DVLAKK+D ++T K IM
Sbjct: 36  RFILTEECHQAPALNANRTVREAYDRWGKANDKACVYILASMTDVLAKKYDSIATTKGIM 95

Query: 75  ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEAVIDEKSQV 134
           +S + MFGQPS+SLRHEAIK IY  RMKEGTSVRE VLDMM+HFN+A+ +   IDE +QV
Sbjct: 96  DSFREMFGQPSWSLRHEAIKRIYTKRMKEGTSVREHVLDMMMHFNIAKVHGGPIDEANQV 155

Query: 135 SFIMMSL 142
           SFI+ SL
Sbjct: 156 SFILQSL 162

BLAST of CmaCh17G005260 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.6e-37
Identity = 82/165 (49.70%), Postives = 117/165 (70.91%), Query Frame = 1

Query: 15  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKSRVYILASISDVLAKKHDVMSTAKEIM 74
           +FVL++ECPP  ++NA +T R+ YD+WIK N+K++ ++LAS+SDVL KKH+ M TA EIM
Sbjct: 36  KFVLVDECPPEPAANATKTAREPYDRWIKANNKAKCFMLASMSDVLCKKHEEMETAYEIM 95

Query: 75  ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEAVIDEKSQV 134
           ESL+ MFG PS   R +A++   N +MK+G+SV+  VL+M+ H + AE N A IDE +Q+
Sbjct: 96  ESLEAMFGAPSEKARLDAVRAFMNDKMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQL 155

Query: 135 SFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG 180
             I+ SL   F +F  N VMNK + NLT L+N+LQ ++S    KG
Sbjct: 156 GIILESLSPDFHEFVNNFVMNKKKSNLTELMNDLQNFESTNQAKG 200

BLAST of CmaCh17G005260 vs. TrEMBL
Match: W9RV37_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006900 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.9e-36
Identity = 82/165 (49.70%), Postives = 115/165 (69.70%), Query Frame = 1

Query: 15  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKSRVYILASISDVLAKKHDVMSTAKEIM 74
           +FVL+EECPP  + NA +T R+ YD+WIK N+K++ ++LAS+SDVL KKH+ M TA EIM
Sbjct: 11  KFVLVEECPPEPAVNATKTAREPYDRWIKANNKAKCFMLASMSDVLRKKHEEMETAYEIM 70

Query: 75  ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEAVIDEKSQV 134
           ESL+ MFG PS   R  A++   N +MK+G+SV+  VL+M+ H + AE N A IDE ++V
Sbjct: 71  ESLEAMFGPPSEKARLAAVRAFMNDKMKKGSSVKVHVLNMIDHLHDAELNGARIDETTKV 130

Query: 135 SFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG 180
             I+ S    F++F  N VMNK + NLT L+N+LQ ++S    KG
Sbjct: 131 GIILESPSPVFYEFVNNFVMNKKKSNLTELMNDLQNFESTNKRKG 175

BLAST of CmaCh17G005260 vs. TrEMBL
Match: W9ST61_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003432 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.7e-35
Identity = 82/164 (50.00%), Postives = 114/164 (69.51%), Query Frame = 1

Query: 15  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKSRVYILASISDVLAKKHDVMSTAKEIM 74
           +FVL+EECP   ++N ++T R+ YD WIK N+ ++ ++LA++SDVL KKH+ M TA EIM
Sbjct: 11  KFVLVEECPQELAANTSKTTREPYDHWIKANNNAKCFMLANMSDVLRKKHEEMETAYEIM 70

Query: 75  ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEAVIDEKSQV 134
           ESL+ MFG PS   R +A+    N +MK+G+SV+  VL+M+ H + AE N A IDE +QV
Sbjct: 71  ESLEAMFGTPSEKARLDAVWAFMNDKMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQV 130

Query: 135 SFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNK 179
             I+ SL  +F QF  N VMNK + NLT L+N LQ ++S  TNK
Sbjct: 131 GIILESLSPNFHQFVNNFVMNKKKSNLTELMNNLQNFES--TNK 172

BLAST of CmaCh17G005260 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 232.6 bits (592), Expect = 5.2e-58
Identity = 116/165 (70.30%), Postives = 139/165 (84.24%), Query Frame = 1

Query: 15  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKSRVYILASISDVLAKKHDVMSTAKEIM 74
           RFVL EECP   + NANRTVR+AYD+W+K NDK+RVYILAS++DVLAKKHD ++TAK IM
Sbjct: 36  RFVLTEECPQAPALNANRTVREAYDRWVKANDKARVYILASMTDVLAKKHDSIATAKGIM 95

Query: 75  ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEAVIDEKSQV 134
           +SL+ MFGQPS+SLRHEAIK+IY  RMKEGTSVRE VLDMM+HFN+AE N   IDE +QV
Sbjct: 96  DSLREMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQV 155

Query: 135 SFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG 180
           SFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L  +KG
Sbjct: 156 SFILQSLPKSFVPFQTNASLNKIEFNLTTLLNELQRFQNLTLSKG 200

BLAST of CmaCh17G005260 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.9e-52
Identity = 105/165 (63.64%), Postives = 138/165 (83.64%), Query Frame = 1

Query: 15  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKSRVYILASISDVLAKKHDVMSTAKEIM 74
           RFVL+E+CP  +++NA RTVR+AY++W K N+K+R Y+LAS+S+VLAKK++ M TA+EIM
Sbjct: 36  RFVLVEKCPQVSAANATRTVREAYERWAKANEKARAYLLASLSEVLAKKNESMLTAREIM 95

Query: 75  ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEAVIDEKSQV 134
           +SL+ MFGQ S+ ++H+A+KYIYN RM +G  VRE VL+MMV+FNVAE N AVIDE +QV
Sbjct: 96  DSLQEMFGQASYQIKHDALKYIYNARMNDGALVREHVLNMMVYFNVAEMNGAVIDEANQV 155

Query: 135 SFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG 180
           SFI+ SL +SF QFR+NVVMNKI Y LT LLNELQT++SL+  KG
Sbjct: 156 SFILESLLESFLQFRSNVVMNKIAYTLTTLLNELQTFESLMKIKG 200

BLAST of CmaCh17G005260 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 2.9e-48
Identity = 97/134 (72.39%), Postives = 117/134 (87.31%), Query Frame = 1

Query: 15  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKSRVYILASISDVLAKKHDVMSTAKEIM 74
           RFVL EECP N +SNANRT R+AYD+WIK N+K+RVYILAS+SDVLAKKH+ ++TAKEIM
Sbjct: 36  RFVLTEECPQNPASNANRTGREAYDRWIKANEKARVYILASMSDVLAKKHESLATAKEIM 95

Query: 75  ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEAVIDEKSQV 134
           +SL+GMFGQP +SLRHEA+KYIY  RMKEGTSVRE VLDMM+HFN+A+ N  +I+E +QV
Sbjct: 96  DSLRGMFGQPEWSLRHEAVKYIYTKRMKEGTSVREHVLDMMMHFNIAQVNGGLIEEVNQV 155

Query: 135 SFIMMSLPKSFFQF 149
           SFI+ SLPKSF  F
Sbjct: 156 SFILESLPKSFIPF 169

BLAST of CmaCh17G005260 vs. NCBI nr
Match: gi|659118732|ref|XP_008459275.1| (PREDICTED: uncharacterized protein LOC103498451 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-44
Identity = 91/160 (56.88%), Postives = 120/160 (75.00%), Query Frame = 1

Query: 15  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKSRVYILASISDVLAKKHDVMSTAKEIM 74
           RF+L+EEC    +    ++VRDAYD+W K NDK+ VYI+AS+SD+L+ KH +M T ++I+
Sbjct: 25  RFILMEECSLFLTQGTFKSVRDAYDRWKKANDKAHVYIMASMSDILSNKHKIMVTTRQIV 84

Query: 75  ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEAVIDEKSQV 134
           +SL+ MFGQ S  ++ E IKY+YN RMK+  SV++ VL+M+VHFNV E N  V DEKSQV
Sbjct: 85  DSLREMFGQLSIQIKQETIKYVYNARMKDSQSVKKHVLNMIVHFNVVEMNVVVFDEKSQV 144

Query: 135 SFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSL 175
           SFI+  LPKS  QF  N  MNKI+YN+T  LNELQT+QSL
Sbjct: 145 SFILKYLPKSSLQFNNNAEMNKIKYNMTIFLNELQTFQSL 184

BLAST of CmaCh17G005260 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 1.8e-42
Identity = 88/124 (70.97%), Postives = 104/124 (83.87%), Query Frame = 1

Query: 15  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKSRVYILASISDVLAKKHDVMSTAKEIM 74
           RFVL EECP   SSNA++T R AYD+WIK N+K+RVYILAS+SDVLAKKH+ ++TAKEIM
Sbjct: 36  RFVLTEECPQTPSSNASQTSRKAYDRWIKANEKARVYILASMSDVLAKKHESLATAKEIM 95

Query: 75  ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEAVIDEKSQV 134
            SLKGMFGQP +SLRHE IKYIY  RMKEGTS++E VLDMM+HFN+ E N   IDE +QV
Sbjct: 96  NSLKGMFGQPKWSLRHETIKYIYTKRMKEGTSIKEHVLDMMMHFNIFEVNGGAIDEANQV 155

Query: 135 SFIM 139
           SFI+
Sbjct: 156 SFIL 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
E2GK51_BRYDI3.7e-5870.30Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
E2GK52_BRYDI5.5e-3866.14Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
W9SH28_9ROSA3.6e-3749.70Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1[more]
W9RV37_9ROSA3.9e-3649.70Uncharacterized protein OS=Morus notabilis GN=L484_006900 PE=4 SV=1[more]
W9ST61_9ROSA9.7e-3550.00Uncharacterized protein OS=Morus notabilis GN=L484_003432 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|299474487|gb|ADJ18449.1|5.2e-5870.30gag/pol protein [Bryonia dioica][more]
gi|659113933|ref|XP_008456826.1|1.9e-5263.64PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
gi|778697615|ref|XP_011654359.1|2.9e-4872.39PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus][more]
gi|659118732|ref|XP_008459275.1|1.1e-4456.88PREDICTED: uncharacterized protein LOC103498451 [Cucumis melo][more]
gi|659086056|ref|XP_008443743.1|1.8e-4270.97PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G005260.1CmaCh17G005260.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 20..170
score: 6.1
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 20..170
score: 6.1
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 41..172
score: 3.2

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None