CmaCh17G005130 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G005130
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Kinesin light chain
Location	Cma_Chr17 : 3473190 .. 3474403 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTATCATCAAAATGGCAACACCCCATCTTCGCATTCAAGTCCCATCCATAGACGACGATCACAAGACCACCACATCACCATGGCTCGACAACCCGGACCACGGTCCATATCTACTAAAGCTAGCTTGGGACACTATAATTTCGGGCGAGAGTCCAACCAAGGCTTTGGACTATGCAGTCCGAGCTGCCAAGCGTTCGAGAGATTTCCGAGTCCCGGCGTCGAGCTGCCCATGAGCTTGCACATGGTCACTGCCATTTACTGCCGGCTCGGGCAGTTAGACGAGGCCATTCCCGTTCTCGAGCTGTCCATCGAGGTTGTGGAACGTAGAAACGACCCGGACCATGCTTTGGCAAAATATTCCGGGTACATGCAGCTTGGGGATACTTATTCTATGTTGGGGCAGTTGGATCAGTCCATTTCTTGTTATGAAACTGGCTTGATGATCCAGACTCATGGGTTACCTGACTCTGACCCTAAAGTTGGTGAGACTTGCAGGTCCACCTTGCTTACTTGCTTACTAATGGAAACATGATCCCATGTCAGTTAGAGAGGAGGAGGCGGTTAGACTGTTTCAAAAGGCCAGGGTGGTGCTGGTGGAGCACTATGGTGTCTATCATTCTGATACTCCTGCTGTTTCTAGCAATCTTGCTGGTGCTTATGATGCCATGGGGAGGTATGCAACATTATAAGTATAGTGATCACGTTATACCGGTTTGATCGATGAACGTTGTTTCAAAAAGTGTGTTGATAGGTTCTAAACTTTCGATTTTGTATTGAATTTGAAAATAATTTGGTTGATAATATATGCAGGGTGGAAGAAGGCATTGAGATATTAGAAGACATCCTTAAAGTGAGGGAAGAGATGCTTGGAACTGCAAATCCAGAGGTAGATGAGGAAAAAAGAAGGCTGCAGGAACAGTTAAAAGAGGCTGGAAGGGCTTTACAGAATGTGCTTGCCTCCCAATCCTTGAGGATGAAGAAACAGGTAGCATCAAAGATATGGTCTGGTGGGTTCAGTTTTAGAGCCTGACAAGCTCTATGAGCGTAGTTTAGTGATAATTGAATTATGGTCGAACATTTAACTTTTCAAACTGCACATTTGTTGTACTAAAAGATATTGATATTAACAGAGGGTATTACAAGAATTACGCTTTTCACGATACCTTAGCTAAGCATCATAAATGGTTGGGGCAGATTTTTTTTGGGTGAGG

mRNA sequence

TTTGTATCATCAAAATGGCAACACCCCATCTTCGCATTCAAGTCCCATCCATAGACGACGATCACAAGACCACCACATCACCATGGCTCGACAACCCGGACCACGGTCCATATCTACTAAAGCTAGCTTGGGACACTATAATTTCGGGCGAGAGTCCAACCAAGGCTTTGGACTATGCAGTCCGAGCTGCCAAGCGTTCGAGAGATTTCCGAGTCCCGGCGTCGAGCTGCCCATGAGCTTGCACATGGTCACTGCCATTTACTGCCGGCTCGGGCAGTTAGACGAGGCCATTCCCGTTCTCGAGCTGTCCATCGAGGTTGTGGAACGTAGAAACGACCCGGACCATGCTTTGGCAAAATATTCCGGGTACATGCAGCTTGGGGATACTTATTCTATGTTGGGGCAGTTGGATCAGTCCATTTCTTGTTATGAAACTGGCTTGATGATCCAGACTCATGGGTTACCTGACTCTGACCCTAAAGTTGGTGAGACTTGCAGGTCCACCTTGCTTACTTGCTTACTAATGGAAACATGATCCCATGTCAGTTAGAGAGGAGGAGGCGGTTAGACTGTTTCAAAAGGCCAGGGTGGTGCTGGTGGAGCACTATGGTGTCTATCATTCTGATACTCCTGCTGTTTCTAGCAATCTTGCTGGTGCTTATGATGCCATGGGGAGGGTGGAAGAAGGCATTGAGATATTAGAAGACATCCTTAAAGTGAGGGAAGAGATGCTTGGAACTGCAAATCCAGAGGTAGATGAGGAAAAAAGAAGGCTGCAGGAACAGTTAAAAGAGGCTGGAAGGGCTTTACAGAATGTGCTTGCCTCCCAATCCTTGAGGATGAAGAAACAGGTAGCATCAAAGATATGGTCTGGTGGGTTCAGTTTTAGAGCCTGACAAGCTCTATGAGCGTAGTTTAGTGATAATTGAATTATGGTCGAACATTTAACTTTTCAAACTGCACATTTGTTGTACTAAAAGATATTGATATTAACAGAGGGTATTACAAGAATTACGCTTTTCACGATACCTTAGCTAAGCATCATAAATGGTTGGGGCAGATTTTTTTTGGGTGAGG

Coding sequence (CDS)

ATGTCAGTTAGAGAGGAGGAGGCGGTTAGACTGTTTCAAAAGGCCAGGGTGGTGCTGGTGGAGCACTATGGTGTCTATCATTCTGATACTCCTGCTGTTTCTAGCAATCTTGCTGGTGCTTATGATGCCATGGGGAGGGTGGAAGAAGGCATTGAGATATTAGAAGACATCCTTAAAGTGAGGGAAGAGATGCTTGGAACTGCAAATCCAGAGGTAGATGAGGAAAAAAGAAGGCTGCAGGAACAGTTAAAAGAGGCTGGAAGGGCTTTACAGAATGTGCTTGCCTCCCAATCCTTGAGGATGAAGAAACAGGTAGCATCAAAGATATGGTCTGGTGGGTTCAGTTTTAGAGCCTGA

Protein sequence

MSVREEEAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEMLGTANPEVDEEKRRLQEQLKEAGRALQNVLASQSLRMKKQVASKIWSGGFSFRA

Homology

[Close]

BLAST of CmaCh17G005130 vs. TrEMBL
Match: A0A0A0KCI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106760 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.1e-38
Identity = 94/118 (79.66%), Postives = 101/118 (85.59%), Query Frame = 1


Query: 7   EAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEMLG 66
           EAVRLFQ+A+VVL EHYGVYHSDT AVSSNLA AYDAMGRVEE IEILE+ILKVREEMLG
Sbjct: 359 EAVRLFQEAKVVLEEHYGVYHSDTLAVSSNLAAAYDAMGRVEEAIEILEEILKVREEMLG 418

Query: 67  TANPEVDEEKRRLQEQLKEAGRA-------LQNVLASQSLRMKKQVASKIWSGGFSFR 118
           TANPEVDEEKRRL+E LKEAGRA       LQ +L S SLRMKK+VA K W+GGFSFR
Sbjct: 419 TANPEVDEEKRRLEELLKEAGRARNKKAKSLQILLGSNSLRMKKEVA-KRWTGGFSFR 475

[Close]

BLAST of CmaCh17G005130 vs. TrEMBL
Match: E5GCM7_CUCME (Kinesin light chain OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-36
Identity = 91/118 (77.12%), Postives = 99/118 (83.90%), Query Frame = 1


Query: 7   EAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEMLG 66
           EAVRLFQ+A+VVL E YGVYHSDT AVSSNLA AYDAMG VEE IEILE+ILKVREEMLG
Sbjct: 431 EAVRLFQEAKVVLEEQYGVYHSDTLAVSSNLAAAYDAMGSVEEAIEILEEILKVREEMLG 490

Query: 67  TANPEVDEEKRRLQEQLKEAGRA-------LQNVLASQSLRMKKQVASKIWSGGFSFR 118
           TANPEVDEE+RRL+E LKEAGRA       LQ +L S SLRMKK+VA K W+GGFSFR
Sbjct: 491 TANPEVDEERRRLEELLKEAGRARNKKAKSLQILLGSNSLRMKKEVA-KRWTGGFSFR 547

[Close]

BLAST of CmaCh17G005130 vs. TrEMBL
Match: A0A151SIH4_CAJCA (Nephrocystin-3 OS=Cajanus cajan GN=KK1_000831 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.6e-24
Identity = 67/112 (59.82%), Postives = 83/112 (74.11%), Query Frame = 1


Query: 7   EAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEMLG 66
           +A + F++AR +L   YG YHSDT  V SNLA  YDAMGRVEE IEILE ILK+REE LG
Sbjct: 390 DAAKHFEEAREILEREYGTYHSDTLGVYSNLAATYDAMGRVEEAIEILEYILKMREEKLG 449

Query: 67  TANPEVDEEKRRLQEQLKEAGR-------ALQNVLASQSLRMKKQVASKIWS 112
           TANP+VD+EK+RL E LKEAGR       +L+N++ S SL+MKK+  S+ WS
Sbjct: 450 TANPDVDDEKKRLFELLKEAGRVRNRKGKSLENLIDSNSLKMKKEGKSR-WS 500

[Close]

BLAST of CmaCh17G005130 vs. TrEMBL
Match: A0A072TN22_MEDTR (Kinesin light chain OS=Medicago truncatula GN=MTR_8g027385 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-23
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = 1


Query: 6   EEAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEML 65
           EEA   F++AR +L   YG YH DT  V SNLA  YDA+GRVE+ I+ILE ILK+REE L
Sbjct: 455 EEAATHFEEARDILEREYGTYHLDTLGVYSNLAATYDALGRVEDAIQILEYILKMREEKL 514

Query: 66  GTANPEVDEEKRRLQEQLKEAGR-------ALQNVLASQSLRMKKQVASKIWSGGFSFR 118
           GTANP+VD+EK+RL E LKEAGR       +L+N++ S SL+MKK+   K   G F FR
Sbjct: 515 GTANPDVDDEKKRLFELLKEAGRVRSRKGTSLENLIDSNSLKMKKEARRK--RGAFGFR 571

[Close]

BLAST of CmaCh17G005130 vs. TrEMBL
Match: C0PIL1_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-23
Identity = 68/120 (56.67%), Postives = 84/120 (70.00%), Query Frame = 1


Query: 6   EEAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEML 65
           +EA +LF++AR VL +  G  H DT  V SNLA  YDAMGRVE+ IEILE +LKVREE L
Sbjct: 429 DEAAQLFEEARAVLEQECGASHPDTLGVYSNLAAIYDAMGRVEDAIEILEHVLKVREEKL 488

Query: 66  GTANPEVDEEKRRLQEQLKEAGR-------ALQNVLASQSLRMKKQVASKIWSGGFSFRA 119
           GTANP+VD+EK+RL E LKEAGR       +LQN+  + S R KK+ A + WS  F FR+
Sbjct: 489 GTANPDVDDEKKRLAELLKEAGRSRNRKQKSLQNLFGTNSQRAKKE-AGRRWS-NFGFRS 546

[Close]

BLAST of CmaCh17G005130 vs. TAIR10
Match: AT4G10840.1 (AT4G10840.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 102.1 bits (253), Expect = 2.5e-22
Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = 1


Query: 6   EEAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEML 65
           +EA  LF++AR +L +  G    DT  V SNLA  YDAMGR+E+ IEILE +LK+REE L
Sbjct: 491 DEAGELFEEARGILEQERGPCDQDTLGVYSNLAATYDAMGRIEDAIEILEQVLKLREEKL 550

Query: 66  GTANPEVDEEKRRLQEQLKEAGR-------ALQNVLASQSLRMKKQVASKIW-SGGFSF 117
           GTANP+ ++EK+RL E LKEAGR       +LQN++   +   KK+ ++K W S GF F
Sbjct: 551 GTANPDFEDEKKRLAELLKEAGRSRNYKAKSLQNLIDPNARPPKKESSAKKWPSLGFKF 609

[Close]

BLAST of CmaCh17G005130 vs. TAIR10
Match: AT3G27960.1 (AT3G27960.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 97.1 bits (240), Expect = 8.0e-21
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 7   EAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEMLG 66
           EA  LF++A+ +L +  G YH DT AV SNLAG YDAMGR+++ IEILE ++  REE LG
Sbjct: 555 EAADLFEEAKTILEKECGPYHPDTLAVYSNLAGTYDAMGRLDDAIEILEYVVGTREEKLG 614

Query: 67  TANPEVDEEKRRLQEQLKEAGR 89
           TANPEV++EK+RL   LKEAGR
Sbjct: 615 TANPEVEDEKQRLAALLKEAGR 636

[Close]

BLAST of CmaCh17G005130 vs. TAIR10
Match: AT1G27500.1 (AT1G27500.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-19
Identity = 50/106 (47.17%), Postives = 73/106 (68.87%), Query Frame = 1


Query: 6   EEAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEML 65
           EEAV LF++A+ +L +  G YH +T  + SNLAGAYDA+GR+++ I++L  ++ VREE L
Sbjct: 544 EEAVELFEEAKCILEQECGPYHPETLGLYSNLAGAYDAIGRLDDAIKLLGHVVGVREEKL 603

Query: 66  GTANPEVDEEKRRLQEQLKEAGRALQNVLASQSLRMKKQVASKIWS 112
           GTANP  ++EKRRL + LKEAG    NV   ++  +K  + S + S
Sbjct: 604 GTANPVTEDEKRRLAQLLKEAG----NVTGRKAKSLKTLIDSDLTS 645

[Close]

BLAST of CmaCh17G005130 vs. NCBI nr
Match: gi|778722077|ref|XP_004140507.2| (PREDICTED: kinesin light chain 1-like, partial [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 3.0e-38
Identity = 94/118 (79.66%), Postives = 101/118 (85.59%), Query Frame = 1


Query: 7   EAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEMLG 66
           EAVRLFQ+A+VVL EHYGVYHSDT AVSSNLA AYDAMGRVEE IEILE+ILKVREEMLG
Sbjct: 424 EAVRLFQEAKVVLEEHYGVYHSDTLAVSSNLAAAYDAMGRVEEAIEILEEILKVREEMLG 483

Query: 67  TANPEVDEEKRRLQEQLKEAGRA-------LQNVLASQSLRMKKQVASKIWSGGFSFR 118
           TANPEVDEEKRRL+E LKEAGRA       LQ +L S SLRMKK+VA K W+GGFSFR
Sbjct: 484 TANPEVDEEKRRLEELLKEAGRARNKKAKSLQILLGSNSLRMKKEVA-KRWTGGFSFR 540

[Close]

BLAST of CmaCh17G005130 vs. NCBI nr
Match: gi|700191320|gb|KGN46524.1| (hypothetical protein Csa_6G106760 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 3.0e-38
Identity = 94/118 (79.66%), Postives = 101/118 (85.59%), Query Frame = 1


Query: 7   EAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEMLG 66
           EAVRLFQ+A+VVL EHYGVYHSDT AVSSNLA AYDAMGRVEE IEILE+ILKVREEMLG
Sbjct: 359 EAVRLFQEAKVVLEEHYGVYHSDTLAVSSNLAAAYDAMGRVEEAIEILEEILKVREEMLG 418

Query: 67  TANPEVDEEKRRLQEQLKEAGRA-------LQNVLASQSLRMKKQVASKIWSGGFSFR 118
           TANPEVDEEKRRL+E LKEAGRA       LQ +L S SLRMKK+VA K W+GGFSFR
Sbjct: 419 TANPEVDEEKRRLEELLKEAGRARNKKAKSLQILLGSNSLRMKKEVA-KRWTGGFSFR 475

[Close]

BLAST of CmaCh17G005130 vs. NCBI nr
Match: gi|659119634|ref|XP_008459760.1| (PREDICTED: nephrocystin-3-like [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 2.8e-36
Identity = 91/118 (77.12%), Postives = 99/118 (83.90%), Query Frame = 1


Query: 7   EAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEMLG 66
           EAVRLFQ+A+VVL E YGVYHSDT AVSSNLA AYDAMG VEE IEILE+ILKVREEMLG
Sbjct: 431 EAVRLFQEAKVVLEEQYGVYHSDTLAVSSNLAAAYDAMGSVEEAIEILEEILKVREEMLG 490

Query: 67  TANPEVDEEKRRLQEQLKEAGRA-------LQNVLASQSLRMKKQVASKIWSGGFSFR 118
           TANPEVDEE+RRL+E LKEAGRA       LQ +L S SLRMKK+VA K W+GGFSFR
Sbjct: 491 TANPEVDEERRRLEELLKEAGRARNKKAKSLQILLGSNSLRMKKEVA-KRWTGGFSFR 547

[Close]

BLAST of CmaCh17G005130 vs. NCBI nr
Match: gi|720037008|ref|XP_010267540.1| (PREDICTED: uncharacterized protein LOC104604745 [Nelumbo nucifera])

HSP 1 Score: 119.8 bits (299), Expect = 3.2e-24
Identity = 70/116 (60.34%), Postives = 82/116 (70.69%), Query Frame = 1


Query: 6   EEAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEML 65
           +EA  LFQ+AR +L +  G YH DT  V SNLA  YDAMGRVE+ IEILE ILK REE L
Sbjct: 484 DEAAELFQEARRILEQECGPYHPDTLGVYSNLAATYDAMGRVEDAIEILEYILKAREEKL 543

Query: 66  GTANPEVDEEKRRLQEQLKEAGRA-------LQNVLASQSLRMKKQVASKIWSGGF 115
           GTANP+VD+EK+RL E LKEAGRA       L+N+L S S RMKK+V  +  S GF
Sbjct: 544 GTANPDVDDEKKRLAELLKEAGRARNRKAKSLENLLDSNSQRMKKEVTKRWPSLGF 599

[Close]

BLAST of CmaCh17G005130 vs. NCBI nr
Match: gi|1012343444|gb|KYP54636.1| (Nephrocystin-3 [Cajanus cajan])

HSP 1 Score: 118.2 bits (295), Expect = 9.5e-24
Identity = 67/112 (59.82%), Postives = 83/112 (74.11%), Query Frame = 1


Query: 7   EAVRLFQKARVVLVEHYGVYHSDTPAVSSNLAGAYDAMGRVEEGIEILEDILKVREEMLG 66
           +A + F++AR +L   YG YHSDT  V SNLA  YDAMGRVEE IEILE ILK+REE LG
Sbjct: 390 DAAKHFEEAREILEREYGTYHSDTLGVYSNLAATYDAMGRVEEAIEILEYILKMREEKLG 449

Query: 67  TANPEVDEEKRRLQEQLKEAGR-------ALQNVLASQSLRMKKQVASKIWS 112
           TANP+VD+EK+RL E LKEAGR       +L+N++ S SL+MKK+  S+ WS
Sbjct: 450 TANPDVDDEKKRLFELLKEAGRVRNRKGKSLENLIDSNSLKMKKEGKSR-WS 500

The following BLAST results are available for this feature:

BLAST of CmaCh17G005130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G005130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCI9_CUCSA	2.1e-38	79.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106760 PE=4 SV=1	[more]
E5GCM7_CUCME	2.0e-36	77.12	Kinesin light chain OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A151SIH4_CAJCA	6.6e-24	59.82	Nephrocystin-3 OS=Cajanus cajan GN=KK1_000831 PE=4 SV=1	[more]
A0A072TN22_MEDTR	1.9e-23	56.30	Kinesin light chain OS=Medicago truncatula GN=MTR_8g027385 PE=4 SV=1	[more]
C0PIL1_MAIZE	4.3e-23	56.67	Uncharacterized protein OS=Zea mays PE=2 SV=1	[more]

BLAST of CmaCh17G005130 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10840.1	2.5e-22	50.42	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G27960.1	8.0e-21	60.98	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G27500.1	3.3e-19	47.17	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CmaCh17G005130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722077\|ref\|XP_004140507.2\|	3.0e-38	79.66	PREDICTED: kinesin light chain 1-like, partial [Cucumis sativus]	[more]
gi\|700191320\|gb\|KGN46524.1\|	3.0e-38	79.66	hypothetical protein Csa_6G106760 [Cucumis sativus]	[more]
gi\|659119634\|ref\|XP_008459760.1\|	2.8e-36	77.12	PREDICTED: nephrocystin-3-like [Cucumis melo]	[more]
gi\|720037008\|ref\|XP_010267540.1\|	3.2e-24	60.34	PREDICTED: uncharacterized protein LOC104604745 [Nelumbo nucifera]	[more]
gi\|1012343444\|gb\|KYP54636.1\|	9.5e-24	59.82	Nephrocystin-3 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G005130.1	CmaCh17G005130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 6..63 score: 3.
IPR011990	Tetratricopeptide-like helical domain	PFAM	PF13374	TPR_10	coord: 35..71 score: 2.
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 6..60 score: 3.
None	No IPR available	unknown	Coil	Coil	coord: 69..96 scor
None	No IPR available	PANTHER	PTHR19959	KINESIN LIGHT CHAIN	coord: 6..88 score: 9.2
None	No IPR available	PANTHER	PTHR19959:SF156	SUBFAMILY NOT NAMED	coord: 6..88 score: 9.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G005130	Cucsa.120960	Cucumber (Gy14) v1	cgycmaB0295
CmaCh17G005130	Cla006704	Watermelon (97103) v1	cmawmB351
CmaCh17G005130	Csa6G106760	Cucumber (Chinese Long) v2	cmacuB379
CmaCh17G005130	CSPI06G08410	Wild cucumber (PI 183967)	cmacpiB383
CmaCh17G005130	CmoCh17G004850	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G005130	Lsi09G016730	Bottle gourd (USVL1VR-Ls)	cmalsiB331
CmaCh17G005130	Cp4.1LG12g04430	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G005130	MELO3C022262.2	Melon (DHL92) v3.6.1	cmamedB365
CmaCh17G005130	CsaV3_6G008780	Cucumber (Chinese Long) v3	cmacucB0451
CmaCh17G005130	Cla97C06G112000	Watermelon (97103) v2	cmawmbB377
CmaCh17G005130	Bhi12G001965	Wax gourd	cmawgoB0457
CmaCh17G005130	CsGy6G008490	Cucumber (Gy14) v2	cgybcmaB763
CmaCh17G005130	Carg26739	Silver-seed gourd	carcmaB0180

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G005130	Cucurbita moschata (Rifu)	cmacmoB368
CmaCh17G005130	Melon (DHL92) v3.5.1	cmameB313
CmaCh17G005130	Watermelon (Charleston Gray)	cmawcgB328
CmaCh17G005130	Cucurbita pepo (Zucchini)	cmacpeB381
CmaCh17G005130	Silver-seed gourd	carcmaB0105
CmaCh17G005130	Cucurbita maxima (Rimu)	cmacmaB375