CmaCh17G005090 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G005090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr17 : 3413699 .. 3414597 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAAGAAGCTAGCACACTTGGAGCAATGGTGGTCCTTTTGTTAGCAGTCAATTTGCAGGGCTTTATTGGAGTTACAAGGGCAGATGATGACTACAATTCACCGATATGGGACAGGTGGCTAGACGAAGATAGAGCTTACTATTTAAGACCGTGCTTGAATCTAATGAAGAGTGCGAAATGTCAAGTGCAACTCTATAATAATTACTTCAATCTTAGTAAAGAGGAATTGGACTTGAATTGTTGCGTTTTCGTCAAAGTCATGGGAAAGAAGTGTACTCTTAACTTTGTGGGTTGGTTTGACTATCCAATTTTTGAAATTTATAAGCCTAACCCTATGAAGCTCTACAAAAGATGTATTGCAAGGCTTTCTTCGTCCATTCCACCTGTGCCACTATAATCTTGAAATGATAGATTAATTCTTATGATTTATTAATAATAAACTTGATAACCTTAAAAGTTTCTATCTTTTTAATTTTTCAATTTAATCTCTTGTTTTTATTTATATTTAAATAGAATATGATCTCAATCTTACTCACGGAAGATAAAATTAAAATCTTAAATAACAACGTTTAACCACTTTAGATGCTTATATTGGTAAATTTAATGAATTTTCAAACATGTTGTAACGGTTAGAAATTATAGATCTCCACACTAATGCTATGATATTGTCCATTCCGAACATAAATTCTCATGGCTTTGCTTTGGGTTCCCCAAAAGGCTTCATTGGGGTCCTTAAGATTGTCCAAACCCCTAATGAACTCCTCTATTTGGTCCACCTCAGCCGGCGACGGAATCCCGAAGTTCATAAACTCGTTTTTGTCATCCCTCCACGCGTTCACAAGCATCAACGTGGCAACTCCGAACGGCGAAATGCAGTTGACACGTATACCATAG

mRNA sequence

ATGGCAAAAGAAGCTAGCACACTTGGAGCAATGGTGGTCCTTTTGTTAGCAGTCAATTTGCAGGGCTTTATTGGAGTTACAAGGGCAGATGATGACTACAATTCACCGATATGGGACAGGTGGCTAGACGAAGATAGAGCTTACTATTTAAGACCGTGCTTGAATCTAATGAAGAGTGCGAAATGTCAAGTGCAACTCTATAATAATTACTTCAATCTTAGTAAAGAGGAATTGGACTTGAATTGTTGCGTTTTCGTCAAAGTCATGGGAAAGAAGTGTACTCTTAACTTTGTGGCCGGCGACGGAATCCCGAAGTTCATAAACTCGTTTTTGTCATCCCTCCACGCGTTCACAAGCATCAACGTGGCAACTCCGAACGGCGAAATGCAGTTGACACGTATACCATAG

Coding sequence (CDS)

ATGGCAAAAGAAGCTAGCACACTTGGAGCAATGGTGGTCCTTTTGTTAGCAGTCAATTTGCAGGGCTTTATTGGAGTTACAAGGGCAGATGATGACTACAATTCACCGATATGGGACAGGTGGCTAGACGAAGATAGAGCTTACTATTTAAGACCGTGCTTGAATCTAATGAAGAGTGCGAAATGTCAAGTGCAACTCTATAATAATTACTTCAATCTTAGTAAAGAGGAATTGGACTTGAATTGTTGCGTTTTCGTCAAAGTCATGGGAAAGAAGTGTACTCTTAACTTTGTGGCCGGCGACGGAATCCCGAAGTTCATAAACTCGTTTTTGTCATCCCTCCACGCGTTCACAAGCATCAACGTGGCAACTCCGAACGGCGAAATGCAGTTGACACGTATACCATAG

Protein sequence

MAKEASTLGAMVVLLLAVNLQGFIGVTRADDDYNSPIWDRWLDEDRAYYLRPCLNLMKSAKCQVQLYNNYFNLSKEELDLNCCVFVKVMGKKCTLNFVAGDGIPKFINSFLSSLHAFTSINVATPNGEMQLTRIP

Homology

[Close]

BLAST of CmaCh17G005090 vs. TrEMBL
Match: A0A0A0KEB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 62/97 (63.92%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 1  MAKEASTLGAMVVLLLAVNLQGFIGVTRADDDYNSPIWDRWLDEDRAYYLRPCLNLMKSA 60
          MA + + + AMV+LL A+NL   +  +  D+DYNS IW+ WLDEDRA+ LRPCL+ M+SA
Sbjct: 1  MANKTNAMRAMVILLSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSA 60

Query: 61 KCQVQLYNNYFNLSKEELDLNCCVFVKVMGKKCTLNF 98
          KCQV+LYN YFN+SK+ELDLNCCVFVKVMGKKC   F
Sbjct: 61 KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAF 97

[Close]

BLAST of CmaCh17G005090 vs. TrEMBL
Match: A0A0A0KQ41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 1


Query: 8  LGAMVVLLLAVNLQGFIGVTRADDDYNSPIWDRWLDEDRAYYLRPCLNLMKSAKCQVQLY 67
          L  +++ LL V+    +  +  DD+  S IW  WLDEDRA  L PCL++M+S KCQV+LY
Sbjct: 9  LVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKCQVELY 68

Query: 68 NNYFNLSKEELDLNCCVFVKVMGKKCTLNF 98
          N YFN+SK+ELDL+CCV+V  MGKKC   F
Sbjct: 69 NYYFNISKKELDLSCCVYVNYMGKKCAAAF 98

[Close]

BLAST of CmaCh17G005090 vs. TrEMBL
Match: A0A0A0L535_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.2e-17
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 1


Query: 1   MAKEASTLGAMVVL----LLAVNLQGFIGVTRADDDYNSPIWDRWLDEDRAYYLRPCLNL 60
           M K +++ GA++++    LL V+    +  +  DD+  S IW  W+D+DRA  L  CL L
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSAKCQVQLYNNYFNLSKEELDLNCCVFVKVMGKKCTLNF 98
           MKS KCQV+LYN YFN SK+E+DL+CCV+V  +G++C  +F
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASF 101

[Close]

BLAST of CmaCh17G005090 vs. NCBI nr
Match: gi|700190907|gb|KGN46111.1| (hypothetical protein Csa_6G054340 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-29
Identity = 62/97 (63.92%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 1  MAKEASTLGAMVVLLLAVNLQGFIGVTRADDDYNSPIWDRWLDEDRAYYLRPCLNLMKSA 60
          MA + + + AMV+LL A+NL   +  +  D+DYNS IW+ WLDEDRA+ LRPCL+ M+SA
Sbjct: 1  MANKTNAMRAMVILLSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSA 60

Query: 61 KCQVQLYNNYFNLSKEELDLNCCVFVKVMGKKCTLNF 98
          KCQV+LYN YFN+SK+ELDLNCCVFVKVMGKKC   F
Sbjct: 61 KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAF 97

[Close]

BLAST of CmaCh17G005090 vs. NCBI nr
Match: gi|700195802|gb|KGN50979.1| (hypothetical protein Csa_5G381840 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 1


Query: 8  LGAMVVLLLAVNLQGFIGVTRADDDYNSPIWDRWLDEDRAYYLRPCLNLMKSAKCQVQLY 67
          L  +++ LL V+    +  +  DD+  S IW  WLDEDRA  L PCL++M+S KCQV+LY
Sbjct: 9  LVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKCQVELY 68

Query: 68 NNYFNLSKEELDLNCCVFVKVMGKKCTLNF 98
          N YFN+SK+ELDL+CCV+V  MGKKC   F
Sbjct: 69 NYYFNISKKELDLSCCVYVNYMGKKCAAAF 98

[Close]

BLAST of CmaCh17G005090 vs. NCBI nr
Match: gi|700200589|gb|KGN55722.1| (hypothetical protein Csa_3G008300 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 7.5e-17
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 1


Query: 1   MAKEASTLGAMVVL----LLAVNLQGFIGVTRADDDYNSPIWDRWLDEDRAYYLRPCLNL 60
           M K +++ GA++++    LL V+    +  +  DD+  S IW  W+D+DRA  L  CL L
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSAKCQVQLYNNYFNLSKEELDLNCCVFVKVMGKKCTLNF 98
           MKS KCQV+LYN YFN SK+E+DL+CCV+V  +G++C  +F
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASF 101

The following BLAST results are available for this feature:

BLAST of CmaCh17G005090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G005090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEB8_CUCSA	1.6e-29	63.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G054340 PE=4 SV=1	[more]
A0A0A0KQ41_CUCSA	1.5e-19	53.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381840 PE=4 SV=1	[more]
A0A0A0L535_CUCSA	5.2e-17	45.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008300 PE=4 SV=1	[more]

BLAST of CmaCh17G005090 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh17G005090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190907\|gb\|KGN46111.1\|	2.3e-29	63.92	hypothetical protein Csa_6G054340 [Cucumis sativus]	[more]
gi\|700195802\|gb\|KGN50979.1\|	2.1e-19	53.33	hypothetical protein Csa_5G381840 [Cucumis sativus]	[more]
gi\|700200589\|gb\|KGN55722.1\|	7.5e-17	45.54	hypothetical protein Csa_3G008300 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008502	Prolamin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G005090.1	CmaCh17G005090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 53..103 score: 1.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G005090	Cucumber (Chinese Long) v3	cmacucB0451
CmaCh17G005090	Watermelon (97103) v2	cmawmbB377
CmaCh17G005090	Wax gourd	cmawgoB0457
CmaCh17G005090	Cucumber (Gy14) v1	cgycmaB0295
CmaCh17G005090	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G005090	Wild cucumber (PI 183967)	cmacpiB383
CmaCh17G005090	Cucumber (Chinese Long) v2	cmacuB379
CmaCh17G005090	Melon (DHL92) v3.5.1	cmameB313
CmaCh17G005090	Watermelon (Charleston Gray)	cmawcgB328
CmaCh17G005090	Watermelon (97103) v1	cmawmB351
CmaCh17G005090	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G005090	Bottle gourd (USVL1VR-Ls)	cmalsiB331
CmaCh17G005090	Cucumber (Gy14) v2	cgybcmaB763
CmaCh17G005090	Melon (DHL92) v3.6.1	cmamedB365