CmaCh17G004880 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G004880
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cma_Chr17 : 3029820 .. 3031821 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTCCTAAATTTGATTAGGGATTTCGAGTTGGAGAAGATGAAGGAGTCTGAATCGGTGAAAGAGTACTCTGACAGACTTCTCAACATTGCCAACAAGGTAAGATTGTTTGGTTCTGTATTAAATGATTCCAGGATCGTTGAAAAGTTGCTAGTTACTGTTCCAGAGAAGTTTGAAGCCACCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGATTTCTCTTATAGAGCTCTTGAATGCTTTACAAGCACAAGAGCAAAGGAGGTCTATGAGGCAAGAAGGGGTGCTTGAAGGTGCCTTACTTGTTAAGCATCAAGACAGCAACAGGTATAAAAACAACAAAAAATTCAAAAACCAATCGACGAATGGAGATCCATTTACCAATTACCAGAAGACAAAAGGAGGAGGTTTCAAAAAATCCTATCCACCTTGCCGCCATTGTGAGAAGAAAGGTCATCTACCATACAAGTGTTAGAGAAGACCTGATGCCTTCTGCTCCAAATGCAATCAACTTGGACATGAAGTTGTGATCTGCAAAGCCAAAGATCAGGTGAAAGAAGTAGATGCACAGGTAGTTGATCAAGAAGAAGAAGAAGAAGATCAATTGTTTATGGTCACTTCTTCCTCAGGAAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCACATGACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACCGAAGATAAGAGAGTGAGGATTGACAATGGTGAACACTTGGAAGTCAAGGGAAAAAGCACAGTAGCTATAACAAGTTATGAAGGTACAAAATTTATTCCAGATGTTTTATTTGTACCTAAAATTGATCAAAATCTCTTAAGTGTTGGTCAGTTACTTGATAAAGGTTATAAAGTATTGTTTGAGAATAAGCAGTGCTTGATTAAAGATGCTAGTGGCAAAGACTTGTTCAATGTCAAAATGGAAGGAAAAAACTTTGCTCTAAATCAAATGACCTTTATATCCAGAGTTAGTGCCATTGAGATTTGGCACAAAAGACTTGGACACTTTCATCATCGAGGTTTGCTTCAGATGCAATCAAAGAAACTGGTAGAATAACTCACTAACATTGATGAGGACATGCCTCCTTGCCGTACTTGTAATTTTGGGAAGCAACATAGGCAACCCTTTCCTAAACAGGCATGGAGAGGCTCGAAAAAGCTGCAACTGGTTCATACTGATCTTTGTGATCCTCAGCGAACACCATCATTAAATCGTAATCTTTATTACACTGTTTTTATTGATGATCTAATAAGAATGTGTTGGATCTTCTTTATGAAGAAAAGTCAGAAGTTGCGGGTGTATTTTGGAAATTCAAGGCCAGAGTTGAGAATGAAAGTGCATGCTTGATTCAGACGGTAAGATCAGATAATGGCAAGGAGTACACTTCAGAAACTTTTAACAGGTTTGTGAAGAGGCTGGAATTGAACATCAGTTGACAGCACCATACACTCCTCAACAAAATGACGTCAGTGAAAAGAGGAATAGATTCATAATGGAGATGACGAGATGAATGCTTCATGAGAAGAATCTTCCAAAACGATTTTGGGGAAAAGCAGGAAACACTGTTGTGTGCTTGCAAAATCGAATTTCAACAAAAGTTGTGAAGTACCTCACATCATTTGAAGTTTGGTATGGTTACAAACCTTCTTTAAAGTTCCTTAGAGAATTTGGGTATCTTTGCTTCACTTACATTCCACAGGTCAAGCGTGATAAGCTTGACAAAAAGTCAGAAGTTGGCATCTTTGTTGGGAATAGCACTATATCCAAAGCTTACAGAGTTTTTCAACCACACATTAGTCGTGTTATTGTGAGCCAAGATGTTCATTTTGGTAGCATGTTAGAAGATTCTGAAGATGAACGACAAGATGCTTTGGTTGATGATGCACCTGTCAAAGGAGGAGCTTTTGGTGATCGAGGAAAAACAAAATCTGGGAGTTGGTTGGTTGACCTCTAA

mRNA sequence

ATGAAAGTCCTAAATTTGATTAGGGATTTCGAGTTGGAGAAGATGAAGGAGTCTGAATCGGTGAAAGAGTACTCTGACAGACTTCTCAACATTGCCAACAAGGTAAGATTGTTTGGTTCTGTATTAAATGATTCCAGGATCGTTGAAAAGTTGCTAGTTACTGTTCCAGAGAAGTTTGAAGCCACCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGATTTCTCTTATAGAGCTCTTGAATGCTTTACAAGCACAAGAGCAAAGGAGGTCTATGAGGCAAGAAGGGGTGCTTGAAGGTGCCTTACTTGTTAAGCATCAAGACAGCAACAGGTATAAAAACAACAAAAAATTCAAAAACCAATCGACGAATGGAGATCCATTTACCAATTACCAGAAGACAAAAGGAGGAGGTTTCAAAAAATCCTATCCACCTTGCCGCCATTGTGAGAAGAAAGTTGTGATCTGCAAAGCCAAAGATCAGGTGAAAGAAGTAGATGCACAGGTAGTTGATCAAGAAGAAGAAGAAGAAGATCAATTGTTTATGGTCACTTCTTCCTCAGGAAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCACATGACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACCGAAGATAAGAGAGTGAGGATTGACAATGGTGAACACTTGGAAGTCAAGGGAAAAAGCACAGTAGCTATAACAAGTTATGAAGAGTTAGTGCCATTGAGATTTGGCACAAAAGACTTGGACACTTTCATCATCGAGGTCAAGCGTGATAAGCTTGACAAAAAGTCAGAAGTTGGCATCTTTGTTGGGAATAGCACTATATCCAAAGCTTACAGAGTTTTTCAACCACACATTAGTCGTGTTATTGTGAGCCAAGATGTTCATTTTGGTAGCATGTTAGAAGATTCTGAAGATGAACGACAAGATGCTTTGGTTGATGATGCACCTGTCAAAGGAGGAGCTTTTGGTGATCGAGGAAAAACAAAATCTGGGAGTTGGTTGGTTGACCTCTAA

Coding sequence (CDS)

ATGAAAGTCCTAAATTTGATTAGGGATTTCGAGTTGGAGAAGATGAAGGAGTCTGAATCGGTGAAAGAGTACTCTGACAGACTTCTCAACATTGCCAACAAGGTAAGATTGTTTGGTTCTGTATTAAATGATTCCAGGATCGTTGAAAAGTTGCTAGTTACTGTTCCAGAGAAGTTTGAAGCCACCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGATTTCTCTTATAGAGCTCTTGAATGCTTTACAAGCACAAGAGCAAAGGAGGTCTATGAGGCAAGAAGGGGTGCTTGAAGGTGCCTTACTTGTTAAGCATCAAGACAGCAACAGGTATAAAAACAACAAAAAATTCAAAAACCAATCGACGAATGGAGATCCATTTACCAATTACCAGAAGACAAAAGGAGGAGGTTTCAAAAAATCCTATCCACCTTGCCGCCATTGTGAGAAGAAAGTTGTGATCTGCAAAGCCAAAGATCAGGTGAAAGAAGTAGATGCACAGGTAGTTGATCAAGAAGAAGAAGAAGAAGATCAATTGTTTATGGTCACTTCTTCCTCAGGAAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCACATGACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACCGAAGATAAGAGAGTGAGGATTGACAATGGTGAACACTTGGAAGTCAAGGGAAAAAGCACAGTAGCTATAACAAGTTATGAAGAGTTAGTGCCATTGAGATTTGGCACAAAAGACTTGGACACTTTCATCATCGAGGTCAAGCGTGATAAGCTTGACAAAAAGTCAGAAGTTGGCATCTTTGTTGGGAATAGCACTATATCCAAAGCTTACAGAGTTTTTCAACCACACATTAGTCGTGTTATTGTGAGCCAAGATGTTCATTTTGGTAGCATGTTAGAAGATTCTGAAGATGAACGACAAGATGCTTTGGTTGATGATGCACCTGTCAAAGGAGGAGCTTTTGGTGATCGAGGAAAAACAAAATCTGGGAGTTGGTTGGTTGACCTCTAA

Protein sequence

MKVLNLIRDFELEKMKESESVKEYSDRLLNIANKVRLFGSVLNDSRIVEKLLVTVPEKFEATITTLENTKDLSKISLIELLNALQAQEQRRSMRQEGVLEGALLVKHQDSNRYKNNKKFKNQSTNGDPFTNYQKTKGGGFKKSYPPCRHCEKKVVICKAKDQVKEVDAQVVDQEEEEEDQLFMVTSSSGKESSESWLIDSGCTNHMTYDKESFEELRDTEDKRVRIDNGEHLEVKGKSTVAITSYEELVPLRFGTKDLDTFIIEVKRDKLDKKSEVGIFVGNSTISKAYRVFQPHISRVIVSQDVHFGSMLEDSEDERQDALVDDAPVKGGAFGDRGKTKSGSWLVDL

Homology

[Close]

BLAST of CmaCh17G004880 vs. TrEMBL
Match: A0A151RSW3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_032849 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.1e-65
Identity = 148/268 (55.22%), Postives = 185/268 (69.03%), Query Frame = 1


Query: 1   MKVLNLIRDFELEKMKESESVKEYSDRLLNIANKVRLFGSVLNDSRIVEKLLVTVPEKFE 60
           MKVLNL+R+FEL++MKESE +KEYSD+LL IANK+RL GS   DSRIVEK+LVTVPEK+E
Sbjct: 15  MKVLNLMREFELQRMKESEKIKEYSDKLLGIANKIRLLGSNFPDSRIVEKILVTVPEKYE 74

Query: 61  ATITTLENTKDLSKISLIELLNALQAQEQRRSMRQEGVLEGALLVKHQDSNRYKNNKKFK 120
           A+I +LENT+DLSKI+  E+L+A QAQEQR  MR++  +EGALLVK Q +  YK N    
Sbjct: 75  ASIASLENTRDLSKITFAEVLHAFQAQEQRSLMREDHAVEGALLVKSQQAKNYKKNY--- 134

Query: 121 NQSTNGDPFTNYQKTKGGGFKKSYPPCRHCEK------------------------KVVI 180
                  P ++Y K KGG  KKSYPPC+HC K                        + +I
Sbjct: 135 -------PASSYDKGKGG--KKSYPPCQHCGKMGHAPFKCWQRPDAKCNKCNQMGHEAII 194

Query: 181 CKAKDQVKEVDAQVVDQEEEEEDQLFMVTSSSGKESSESWLIDSGCTNHMTYDKESFEEL 240
           CK+K+Q +E +A+  DQ  EEEDQLF+ T     ESSESWLIDSGCTNHMT++K  F +L
Sbjct: 195 CKSKNQQQEEEAKPADQ--EEEDQLFVATCFLSSESSESWLIDSGCTNHMTFNKALFRDL 254

Query: 241 RDTEDKRVRIDNGEHLEVKGKSTVAITS 245
           R T   +VRI NG+H+ VKGK T+AITS
Sbjct: 255 RPTNVTKVRIGNGDHISVKGKGTIAITS 268

[Close]

BLAST of CmaCh17G004880 vs. TrEMBL
Match: M1B1W5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013513 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 4.6e-65
Identity = 151/268 (56.34%), Postives = 185/268 (69.03%), Query Frame = 1


Query: 1   MKVLNLIRDFELEKMKESESVKEYSDRLLNIANKVRLFGSVLNDSRIVEKLLVTVPEKFE 60
           M+VLNLIRDFE++KMKE+E++K+YS+RLLNIAN+VRL GSVLNDSRIVEK+LVTVPE+FE
Sbjct: 87  MQVLNLIRDFEIQKMKETETIKDYSERLLNIANRVRLLGSVLNDSRIVEKILVTVPERFE 146

Query: 61  ATITTLENTKDLSKISLIELLNALQAQEQRRSMRQEGVLEGALLVKHQDSNRYKNNKKFK 120
           ATI TLENTKDLSKI+  ELLNALQA EQRR MR+EG  EGAL  K QD  +   NKK K
Sbjct: 147 ATINTLENTKDLSKITFAELLNALQAHEQRRVMREEGNTEGALFAKPQDGGK---NKKKK 206

Query: 121 NQSTNGDPFTNYQKTKGGGFKKSYPPCRHCEK-----------------------KVVIC 180
           N+        +  K K G  KKSYP C+H +K                       +VVIC
Sbjct: 207 NKKNGEGISASTTKGKSGHSKKSYPLCKHNKKGHPSYKCWRRPDARCSKCNQLGHEVVIC 266

Query: 181 KAKDQVKEVDAQVVDQEEEEEDQLFMVTSSSGKESSESWLIDSGCTNHMTYDKESFEELR 240
           K   Q +E +AQ+VD +EE  DQLF+ T  S + SS+ WLIDSGCTNHMT     F+EL+
Sbjct: 267 KNNGQQQEAEAQIVDGKEE--DQLFVATCFSSRSSSKYWLIDSGCTNHMTNGMSLFKELK 326

Query: 241 DTEDKRVRIDNGEHLEVKGKSTVAITSY 246
            T   +VR+ NG+HL V+GK T+AI S+
Sbjct: 327 PTTITKVRLGNGDHLPVRGKGTIAIPSH 349

[Close]

BLAST of CmaCh17G004880 vs. TrEMBL
Match: A0A151TNI1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_022187 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.0e-64
Identity = 146/268 (54.48%), Postives = 184/268 (68.66%), Query Frame = 1


Query: 1   MKVLNLIRDFELEKMKESESVKEYSDRLLNIANKVRLFGSVLNDSRIVEKLLVTVPEKFE 60
           M+VLNL+R+FEL++MKESE +KEYSD+LL IANK+RL GS   DSRIVEK+LVTVPEK+E
Sbjct: 109 MQVLNLMREFELQRMKESEKIKEYSDKLLGIANKIRLLGSNFPDSRIVEKILVTVPEKYE 168

Query: 61  ATITTLENTKDLSKISLIELLNALQAQEQRRSMRQEGVLEGALLVKHQDSNRYKNNKKFK 120
           A+I +LENT+DLSKI+  E+L+A QAQEQR  MR++  +EGALLVK Q +  YK N    
Sbjct: 169 ASIASLENTRDLSKITFAEVLHAFQAQEQRSLMREDHAVEGALLVKSQQAKNYKKNY--- 228

Query: 121 NQSTNGDPFTNYQKTKGGGFKKSYPPCRHCEK------------------------KVVI 180
                  P ++Y K KGG  KKSYPPC+HC K                        + +I
Sbjct: 229 -------PASSYDKGKGG--KKSYPPCQHCGKMGHAPFKCWQRPDAKCNKCNQMGHEAII 288

Query: 181 CKAKDQVKEVDAQVVDQEEEEEDQLFMVTSSSGKESSESWLIDSGCTNHMTYDKESFEEL 240
           CK+K+Q +E +A+  DQ  EEEDQLF+ T     ESSESWLIDS CTNHMT++K  F +L
Sbjct: 289 CKSKNQQQEEEAKPADQ--EEEDQLFVATCFLSSESSESWLIDSSCTNHMTFNKALFRDL 348

Query: 241 RDTEDKRVRIDNGEHLEVKGKSTVAITS 245
           R T   +VRI NG+H+ VKGK T+AITS
Sbjct: 349 RPTNVTKVRIGNGDHISVKGKGTIAITS 362

[Close]

BLAST of CmaCh17G004880 vs. TrEMBL
Match: A0A151SFK6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_024452 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.5e-63
Identity = 152/275 (55.27%), Postives = 194/275 (70.55%), Query Frame = 1


Query: 1   MKVLNLIRDFELEKMKESESVKEYSDRLLNIANKVRLFGSVLNDSRIVEKLLVTVPEKFE 60
           M+VLNL+R+FEL++MKESE++KEYSD+LL+IANK+RL GS   DSRIVEK+LVTVPE++E
Sbjct: 113 MQVLNLMREFELQRMKESETIKEYSDKLLSIANKIRLLGSDFADSRIVEKILVTVPERYE 172

Query: 61  ATITTLENTKDLSKISLIELLNALQAQEQRRSMRQEGVLEGALLVKHQDSNRYKNNKKFK 120
           A+IT+LEN+K+LSKI+L E+L+ALQAQEQRR MR++  +EGAL  KH  +   K N   K
Sbjct: 173 ASITSLENSKNLSKITLAEVLHALQAQEQRRLMREDHAVEGALSAKHHVAGYNKKNFFKK 232

Query: 121 NQSTNGDPFTNYQKTKGGGFKKSYPPCRHCEK---KVVICKAKDQVKEVDAQVVDQEEEE 180
           N ST+ +  TN Q  KG G KKSYPPC+HC K       C  +   K  DAQ     +E 
Sbjct: 233 NPSTSNENTTNNQ-NKGKGKKKSYPPCQHCGKMGHPPFRCWKRPDAKCTDAQ---NAQEN 292

Query: 181 EDQLFMVTSSSGKESSESWLIDSGCTNHMTYDKESFEELRDTEDKRVRIDNGEHLEVKGK 240
           EDQLF+ T  S   SSESWLIDSGCTNHMTYD+E F+ L +TE K VRI NGE + VKGK
Sbjct: 293 EDQLFVATCFSTNSSSESWLIDSGCTNHMTYDRELFKCLDNTEVKWVRIGNGEQIPVKGK 352

Query: 241 STVAITSYEELVPLRFGTKDLD--TFIIEVKRDKL 271
            ++ ITS+        GTK L    ++ E+ ++ L
Sbjct: 353 GSIVITSH-------IGTKTLSDVLYVPEINQNLL 376

[Close]

BLAST of CmaCh17G004880 vs. TrEMBL
Match: A0A151RSU4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_032829 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 4.7e-62
Identity = 143/268 (53.36%), Postives = 181/268 (67.54%), Query Frame = 1


Query: 1   MKVLNLIRDFELEKMKESESVKEYSDRLLNIANKVRLFGSVLNDSRIVEKLLVTVPEKFE 60
           MKVLNL+R+FEL++MKE E +KEYSD+LL IANK+RL GS   DS IVEK+LVTV EK+E
Sbjct: 87  MKVLNLMREFELQRMKEYEKIKEYSDKLLGIANKIRLLGSNFPDSIIVEKILVTVSEKYE 146

Query: 61  ATITTLENTKDLSKISLIELLNALQAQEQRRSMRQEGVLEGALLVKHQDSNRYKNNKKFK 120
           A+  +LENT+DLSKI+  E+L+A QAQEQR  MR++  +EGALLVK Q +  YK N    
Sbjct: 147 ASTASLENTRDLSKITFAEVLHAFQAQEQRSLMREDHAVEGALLVKSQQAKNYKKNY--- 206

Query: 121 NQSTNGDPFTNYQKTKGGGFKKSYPPCRHCEK------------------------KVVI 180
                  P ++Y K KGG  KKSYPPC+HC K                        + +I
Sbjct: 207 -------PASSYDKGKGG--KKSYPPCQHCGKMGHAPFRCWQRPDAKCNKCNQMGHEAII 266

Query: 181 CKAKDQVKEVDAQVVDQEEEEEDQLFMVTSSSGKESSESWLIDSGCTNHMTYDKESFEEL 240
           CK+K+Q +E +A+  DQ  +EEDQLF+ T     ESSESWLIDSGCTNHMT++K  F +L
Sbjct: 267 CKSKNQQQEEEAKAADQ--KEEDQLFVATCFLSSESSESWLIDSGCTNHMTFNKALFRDL 326

Query: 241 RDTEDKRVRIDNGEHLEVKGKSTVAITS 245
           R T   +VRI NG+H+ VKGK T+AITS
Sbjct: 327 RPTNVTKVRIGNGDHISVKGKGTIAITS 340

[Close]

BLAST of CmaCh17G004880 vs. NCBI nr
Match: gi|823251370|ref|XP_012458313.1| (PREDICTED: uncharacterized protein LOC105779111 [Gossypium raimondii])

HSP 1 Score: 287.7 bits (735), Expect = 2.7e-74
Identity = 175/246 (71.14%), Postives = 193/246 (78.46%), Query Frame = 1


Query: 1   MKVLNLIRDFELEKMKESESVKEYSDRLLNIANKVRLFGSVLNDSRIVEKLLVTVPEKFE 60
           MKVLNLIRDFEL+KMKESESVKEYSDRLL+IANKVRL GS LNDSRIVEKLLVTVPEKFE
Sbjct: 99  MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSELNDSRIVEKLLVTVPEKFE 158

Query: 61  ATITTLENTKDLSKISLIELLNALQAQEQRRSMRQEGVLEGALLVKHQDSNRYKNNKKFK 120
           ATITTLENT DLSKISL ELLNALQAQEQRRSMRQEGV+EGAL VKHQD+NRY      +
Sbjct: 159 ATITTLENTNDLSKISLAELLNALQAQEQRRSMRQEGVIEGALPVKHQDNNRYNLRTSQR 218

Query: 121 NQSTNGDPFTNYQKTKGGGFKKSYPPCRHCEKKVVICKAKDQVKEVDAQVVDQEEEEEDQ 180
            +  +       ++      + S  P       +V  K K QV+EVDAQV DQEEE  DQ
Sbjct: 219 VEKIHQAIIRRAKE------EVSRNPTHLVT--IVRRKVKGQVQEVDAQVADQEEE--DQ 278

Query: 181 LFMVTSSSGKESSESWLIDSGCTNHMTYDKESFEELRDTEDKRVRIDNGEHLEVKGKSTV 240
           LF++T  SG+ESSESWLI+SGCTNHMTYDK    ELR+TE KRVRI NGE+LEVKGK TV
Sbjct: 279 LFVLTCFSGRESSESWLINSGCTNHMTYDK----ELRNTEVKRVRIGNGEYLEVKGKGTV 330

Query: 241 AITSYE 247
           AITSYE
Sbjct: 339 AITSYE 330

[Close]

BLAST of CmaCh17G004880 vs. NCBI nr
Match: gi|697187607|ref|XP_009602835.1| (PREDICTED: uncharacterized protein LOC104097920 [Nicotiana tomentosiformis])

HSP 1 Score: 259.2 bits (661), Expect = 1.0e-65
Identity = 151/270 (55.93%), Postives = 188/270 (69.63%), Query Frame = 1


Query: 1   MKVLNLIRDFELEKMKESESVKEYSDRLLNIANKVRLFGSVLNDSRIVEKLLVTVPEKFE 60
           M+VLNL+R+FEL++MK+SE++KEYSDRLLNIAN+VRL GS LNDSRIVEK+LVTVPE+FE
Sbjct: 113 MQVLNLVREFELQRMKDSETIKEYSDRLLNIANRVRLLGSTLNDSRIVEKILVTVPERFE 172

Query: 61  ATITTLENTKDLSKISLIELLNALQAQEQRRSMRQEGVLEGALLVKHQDSNRYKNNKKFK 120
           ATITTLENTKD+SKI+L ELL+A QAQEQRR MRQEG +EGAL VKHQDS R +  +  K
Sbjct: 173 ATITTLENTKDMSKITLAELLSAFQAQEQRRVMRQEGAVEGALPVKHQDSRRNQKKQNKK 232

Query: 121 NQSTNGDPFTNYQKTKGGGFKKSYPPCRHCEKK------------------------VVI 180
            Q  N +   N  K K G  K ++PPC+HC KK                         VI
Sbjct: 233 TQGANNENVGNNNKIKTGSKKTNFPPCQHCGKKGHPPFKCWRRPDAKCSKCNQQGHEAVI 292

Query: 181 CKAKDQVKEVDAQVVDQEEEEEDQLFMVTSSSGKESSESWLIDSGCTNHMTYDKESFEEL 239
           CK+K Q  EV+AQVV+QEE+  DQLF+ T  + ++SSESWLIDSGCTNHMTYDK  F+E 
Sbjct: 293 CKSKIQQHEVEAQVVEQEED--DQLFVATCFTSRDSSESWLIDSGCTNHMTYDKALFKEX 352

[Close]

BLAST of CmaCh17G004880 vs. NCBI nr
Match: gi|1012334254|gb|KYP45621.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 257.7 bits (657), Expect = 2.9e-65
Identity = 148/268 (55.22%), Postives = 185/268 (69.03%), Query Frame = 1


Query: 1   MKVLNLIRDFELEKMKESESVKEYSDRLLNIANKVRLFGSVLNDSRIVEKLLVTVPEKFE 60
           MKVLNL+R+FEL++MKESE +KEYSD+LL IANK+RL GS   DSRIVEK+LVTVPEK+E
Sbjct: 15  MKVLNLMREFELQRMKESEKIKEYSDKLLGIANKIRLLGSNFPDSRIVEKILVTVPEKYE 74

Query: 61  ATITTLENTKDLSKISLIELLNALQAQEQRRSMRQEGVLEGALLVKHQDSNRYKNNKKFK 120
           A+I +LENT+DLSKI+  E+L+A QAQEQR  MR++  +EGALLVK Q +  YK N    
Sbjct: 75  ASIASLENTRDLSKITFAEVLHAFQAQEQRSLMREDHAVEGALLVKSQQAKNYKKNY--- 134

Query: 121 NQSTNGDPFTNYQKTKGGGFKKSYPPCRHCEK------------------------KVVI 180
                  P ++Y K KGG  KKSYPPC+HC K                        + +I
Sbjct: 135 -------PASSYDKGKGG--KKSYPPCQHCGKMGHAPFKCWQRPDAKCNKCNQMGHEAII 194

Query: 181 CKAKDQVKEVDAQVVDQEEEEEDQLFMVTSSSGKESSESWLIDSGCTNHMTYDKESFEEL 240
           CK+K+Q +E +A+  DQ  EEEDQLF+ T     ESSESWLIDSGCTNHMT++K  F +L
Sbjct: 195 CKSKNQQQEEEAKPADQ--EEEDQLFVATCFLSSESSESWLIDSGCTNHMTFNKALFRDL 254

Query: 241 RDTEDKRVRIDNGEHLEVKGKSTVAITS 245
           R T   +VRI NG+H+ VKGK T+AITS
Sbjct: 255 RPTNVTKVRIGNGDHISVKGKGTIAITS 268

[Close]

BLAST of CmaCh17G004880 vs. NCBI nr
Match: gi|971545142|ref|XP_015162830.1| (PREDICTED: uncharacterized protein LOC107060037 [Solanum tuberosum])

HSP 1 Score: 254.6 bits (649), Expect = 2.5e-64
Identity = 156/270 (57.78%), Postives = 187/270 (69.26%), Query Frame = 1


Query: 1   MKVLNLIRDFELEKMKESESVKEYSDRLLNIANKVRLFGSVLNDSRIVEKLLVTVPEKFE 60
           M+VLNL+R+FEL++MKESE++KEYSDRLLNIAN+VRL GS  NDSRIVEK+LVTVPEKFE
Sbjct: 113 MQVLNLVREFELQRMKESETIKEYSDRLLNIANRVRLLGSTFNDSRIVEKILVTVPEKFE 172

Query: 61  ATITTLENTKDLSKISLIELLNALQAQEQRRSMRQEGVLEGALLVKHQDSNRYKNNKKFK 120
           AT+TTLENTKDLSKI+L ELL+A QAQEQRR MRQEG++EGALLVKHQ   R   NKK  
Sbjct: 173 ATVTTLENTKDLSKITLAELLSAFQAQEQRRVMRQEGIVEGALLVKHQYDGR---NKK-- 232

Query: 121 NQSTNGDPFTNYQKTKGGGFKKSYPPCRHCEK---KVVICKAKDQVKEVDAQVVDQEEEE 180
                               K+    C  C +   + VICKAK Q  EV+AQV D+   E
Sbjct: 233 --------------------KRPDAKCSKCNQQGHEAVICKAKIQQPEVEAQVADR---E 292

Query: 181 EDQLFMVTSSSGKESSESWLIDSGCTNHMTYDKESFEELRDTEDKRVRIDNGEHLEVKGK 240
           ED LF+ T  +  +SSESWLIDSGC+NHMT DK  F+EL +TE K+VRI N E L VKGK
Sbjct: 293 EDHLFVATCFTSLDSSESWLIDSGCSNHMTSDKMLFKELWNTETKKVRIGNSECLAVKGK 352

Query: 241 STVAIT--SYEELVPLRFGTKDLDTFIIEV 266
             +AIT  S  +L+       DLD  ++ V
Sbjct: 353 GAIAITSGSRTKLIANVLYVPDLDRNLLSV 354

[Close]

BLAST of CmaCh17G004880 vs. NCBI nr
Match: gi|1012357371|gb|KYP68556.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 253.8 bits (647), Expect = 4.3e-64
Identity = 146/268 (54.48%), Postives = 184/268 (68.66%), Query Frame = 1


Query: 1   MKVLNLIRDFELEKMKESESVKEYSDRLLNIANKVRLFGSVLNDSRIVEKLLVTVPEKFE 60
           M+VLNL+R+FEL++MKESE +KEYSD+LL IANK+RL GS   DSRIVEK+LVTVPEK+E
Sbjct: 109 MQVLNLMREFELQRMKESEKIKEYSDKLLGIANKIRLLGSNFPDSRIVEKILVTVPEKYE 168

Query: 61  ATITTLENTKDLSKISLIELLNALQAQEQRRSMRQEGVLEGALLVKHQDSNRYKNNKKFK 120
           A+I +LENT+DLSKI+  E+L+A QAQEQR  MR++  +EGALLVK Q +  YK N    
Sbjct: 169 ASIASLENTRDLSKITFAEVLHAFQAQEQRSLMREDHAVEGALLVKSQQAKNYKKNY--- 228

Query: 121 NQSTNGDPFTNYQKTKGGGFKKSYPPCRHCEK------------------------KVVI 180
                  P ++Y K KGG  KKSYPPC+HC K                        + +I
Sbjct: 229 -------PASSYDKGKGG--KKSYPPCQHCGKMGHAPFKCWQRPDAKCNKCNQMGHEAII 288

Query: 181 CKAKDQVKEVDAQVVDQEEEEEDQLFMVTSSSGKESSESWLIDSGCTNHMTYDKESFEEL 240
           CK+K+Q +E +A+  DQ  EEEDQLF+ T     ESSESWLIDS CTNHMT++K  F +L
Sbjct: 289 CKSKNQQQEEEAKPADQ--EEEDQLFVATCFLSSESSESWLIDSSCTNHMTFNKALFRDL 348

Query: 241 RDTEDKRVRIDNGEHLEVKGKSTVAITS 245
           R T   +VRI NG+H+ VKGK T+AITS
Sbjct: 349 RPTNVTKVRIGNGDHISVKGKGTIAITS 362

The following BLAST results are available for this feature:

BLAST of CmaCh17G004880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G004880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151RSW3_CAJCA	2.1e-65	55.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
M1B1W5_SOLTU	4.6e-65	56.34	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013513 PE=4 SV=1	[more]
A0A151TNI1_CAJCA	3.0e-64	54.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151SFK6_CAJCA	1.5e-63	55.27	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151RSU4_CAJCA	4.7e-62	53.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CmaCh17G004880 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh17G004880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823251370\|ref\|XP_012458313.1\|	2.7e-74	71.14	PREDICTED: uncharacterized protein LOC105779111 [Gossypium raimondii]	[more]
gi\|697187607\|ref\|XP_009602835.1\|	1.0e-65	55.93	PREDICTED: uncharacterized protein LOC104097920 [Nicotiana tomentosiformis]	[more]
gi\|1012334254\|gb\|KYP45621.1\|	2.9e-65	55.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|971545142\|ref\|XP_015162830.1\|	2.5e-64	57.78	PREDICTED: uncharacterized protein LOC107060037 [Solanum tuberosum]	[more]
gi\|1012357371\|gb\|KYP68556.1\|	4.3e-64	54.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G004880.1	CmaCh17G004880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 4..305 score: 8.6
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 4..305 score: 8.6
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..93 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G004880	Cucurbita maxima (Rimu)	cmacmaB385
CmaCh17G004880	Cucumber (Gy14) v1	cgycmaB0295
CmaCh17G004880	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G004880	Cucurbita moschata (Rifu)	cmacmoB377
CmaCh17G004880	Wild cucumber (PI 183967)	cmacpiB383
CmaCh17G004880	Cucumber (Chinese Long) v2	cmacuB379
CmaCh17G004880	Melon (DHL92) v3.5.1	cmameB313
CmaCh17G004880	Watermelon (Charleston Gray)	cmawcgB328
CmaCh17G004880	Watermelon (97103) v1	cmawmB351
CmaCh17G004880	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G004880	Cucurbita pepo (Zucchini)	cmacpeB378
CmaCh17G004880	Bottle gourd (USVL1VR-Ls)	cmalsiB331
CmaCh17G004880	Cucumber (Gy14) v2	cgybcmaB763
CmaCh17G004880	Melon (DHL92) v3.6.1	cmamedB365
CmaCh17G004880	Silver-seed gourd	carcmaB0841
CmaCh17G004880	Cucumber (Chinese Long) v3	cmacucB0451
CmaCh17G004880	Watermelon (97103) v2	cmawmbB377
CmaCh17G004880	Wax gourd	cmawgoB0457