CmaCh17G003610 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G003610
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description60S ribosomal protein L29-1
LocationCma_Chr17 : 1999818 .. 2001658 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCTCGATTTTAATGTAGAAGATGTACTTCATGGTAAAATAAATAAAATTTTGACAATTATGAATAATAAATATTCTAATTGCATTCGACTATTATATTCTCGAATAAAACTTGTATATATCGAAGTAATTTTTGTTTTAAACAAATATTTTTCAAGAACACGCGACTTCAAATTTGCAACAACGATGACATAGATAGATGAGGTTGAAGGAGATTGAAGGAGATGAAGGTCCTTGTCTACACAAAAAGCAAGGTGTGGAATGTTTTGGGAGTCTTAAGTTTCTCAATTTGTTCGGGTTGGATGTCTACACAAAAAGCATGGTGTAGAATGTTTTGGGAGTCTTAAGTTTCTCAATTTGTTCGGGTTGGATGTCTACACAAAAAGCAAGGTGTAGAATGTTTTGGGAGTCTTAAGTTTCTCAATTTGTTCGGGTTGGATGTCTACACAAAAAGCAAGGTGTGGAATGTTTTGAGAGTCTTAAGTTTCTCATTTTTTTCGGGTTGGAAGATTAAATGCTCACGAATCAATATATACTGATATATACACAAATATGTATACATGTTGTAGCGATAAATATTTACATAATATAATTTATTATGGGCACCCTTTTTATCAATTTTATACAATGTCTTGTGACCATTTTAGTTGTAGAGTTTACATATTATTGAAGAATCTCTTGATGTTTAAGCATTTTCATAAAATATAAACATTTTTTTGGACAATTTAATATTATTTCTTTGGGCCCATTTGGCCCAAAATCAGGCCCATTATAATTTGGAGGCAAGCCCAAGTTGAGCTGCCCATAACACTAAATTAGGGCAACACGATTAACAGTACGACGGAAGCCATAGCATTTGCCGCTACCACAGAGTAAGGTTTGTTCAAACTCTCTCCTTCTATCGATTTCTTGGCATATCAGTTTTCTGATTTCACCTTCTTTTTCGTTCAGAGATGGCGAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGCAAAGCCCATAGGAACGGCATCAAGAAGCCAAGGAAGCATCGTCACACTTCCACCAAAGGAGTATGAGATTTACTGATGGAATCATTTCTGTTCTTGTTCAATGGATTGTTTTGCTTTATTGAATGCTTCTGCAGAATAGTTTTAATTCGTTATCTCGTTGATCTGTGTTTAGATGGATCCGAAGTTCCTTAGAAACCAGAGGTACGCGAAGAAACACAACAATAAGAGCGGTGAAACCGGCAGTGAGGAAGAGTAAAGTAGAACGCCATGAAGCCGGCAAGTTTAGGGTTTTTATGATATAAGTTTGCTTCTATTGAATCTTTTGTTTTTGCTCTTCTTTTGTTCACTAGTCTTGTAATTCTGACCTGGTTGCAGCGAATTCCATTTCAATGTGGAAAGCGCTGCTTCTGATGCCTGATTGCGACAATTCATTATCAGATTTGCATTTCTAAGGCTGCATCTTCATACATAATCAATTTGTGCCATCGACATTATCTTCTTTCTGGGTTTAATGGTTTCTATTATCTTATGCTGTCAATCTTGCTGGAAAGCATTTGACTTATAGATTTAGATTACTGGGCCTCAATCCCTGCCTCTGTTCATTAAAAACCAGCTTCACAAATTTAGACATGAAGTCTCTTATGATTCAATGCTATTAGAGCTGTCTTTTGAGATGTTTTCTTGGGATATTCTTTTTCCAAGTTCATTTGCCTCGATTGTTCTCTTTTTTCTGTTTTTTCTCTTCTTTTTGTATGCTACATAACTTGGATTGAATGTTCTTGGCCTTCTTTGATTCTCATTCGAATCGAAATGTGAGATCATAGTTATGAACCGCCATCTTCG

mRNA sequence

ATGTGGCTCGATTTTAATGTAGAAGATGTACTTCATGAGATGGCGAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGCAAAGCCCATAGGAACGGCATCAAGAAGCCAAGGAAGCATCGTCACACTTCCACCAAAGGAATGGATCCGAAGTTCCTTAGAAACCAGAGGTACGCGAAGAAACACAACAATAAGAGCGGTGAAACCGGCAGTGAGGAAGAGTAAAGTAGAACGCCATGAAGCCGGCAAGTTTAGGGTTTTTATGATATAAGTTTGCTTCTATTGAATCTTTTGTTTTTGCTCTTCTTTTGTTCACTAGTCTTGTAATTCTGACCTGGTTGCAGCGAATTCCATTTCAATGTGGAAAGCGCTGCTTCTGATGCCTGATTGCGACAATTCATTATCAGATTTGCATTTCTAAGGCTGCATCTTCATACATAATCAATTTGTGCCATCGACATTATCTTCTTTCTGGGTTTAATGGTTTCTATTATCTTATGCTGTCAATCTTGCTGGAAAGCATTTGACTTATAGATTTAGATTACTGGGCCTCAATCCCTGCCTCTGTTCATTAAAAACCAGCTTCACAAATTTAGACATGAAGTCTCTTATGATTCAATGCTATTAGAGCTGTCTTTTGAGATGTTTTCTTGGGATATTCTTTTTCCAAGTTCATTTGCCTCGATTGTTCTCTTTTTTCTGTTTTTTCTCTTCTTTTTGTATGCTACATAACTTGGATTGAATGTTCTTGGCCTTCTTTGATTCTCATTCGAATCGAAATGTGAGATCATAGTTATGAACCGCCATCTTCG

Coding sequence (CDS)

ATGTGGCTCGATTTTAATGTAGAAGATGTACTTCATGAGATGGCGAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGCAAAGCCCATAGGAACGGCATCAAGAAGCCAAGGAAGCATCGTCACACTTCCACCAAAGGAATGGATCCGAAGTTCCTTAGAAACCAGAGGTACGCGAAGAAACACAACAATAAGAGCGGTGAAACCGGCAGTGAGGAAGAGTAA

Protein sequence

MWLDFNVEDVLHEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
Homology
[Close]
BLAST of CmaCh17G003610 vs. Swiss-Prot
Match: RL291_ARATH (60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-21
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 73
          MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE  S E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 74 E 75
          E
Sbjct: 61 E 61

[Close]
BLAST of CmaCh17G003610 vs. Swiss-Prot
Match: RL292_ARATH (60S ribosomal protein L29-2 OS=Arabidopsis thaliana GN=RPL29B PE=2 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-20
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 73
          MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGE    E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60

Query: 74 E 75
          E
Sbjct: 61 E 61

[Close]
BLAST of CmaCh17G003610 vs. Swiss-Prot
Match: RL29_BOVIN (60S ribosomal protein L29 OS=Bos taurus GN=RPL29 PE=2 SV=3)

HSP 1 Score: 82.0 bits (201), Expect = 2.9e-15
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK 66
          MAKSKNHT HNQSRK HRNGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52

[Close]
BLAST of CmaCh17G003610 vs. Swiss-Prot
Match: RL29_HUMAN (60S ribosomal protein L29 OS=Homo sapiens GN=RPL29 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 2.9e-15
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK 66
          MAKSKNHT HNQSRK HRNGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52

[Close]
BLAST of CmaCh17G003610 vs. Swiss-Prot
Match: RL29_MACFA (60S ribosomal protein L29 OS=Macaca fascicularis GN=RPL29 PE=2 SV=3)

HSP 1 Score: 82.0 bits (201), Expect = 2.9e-15
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK 66
          MAKSKNHT HNQSRK HRNGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52

[Close]
BLAST of CmaCh17G003610 vs. TrEMBL
Match: A0A103XGF8_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_007767 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-22
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 1 

Query: 3   LDFNVEDVLHEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKH 62
           +DF  + V  EMAKSKNHTAHNQS KAHRNGIKKPRKHRHTSTKGMDPKF RNQRYA+KH
Sbjct: 71  IDFYQQFVKEEMAKSKNHTAHNQSHKAHRNGIKKPRKHRHTSTKGMDPKFSRNQRYARKH 130

Query: 63  NNKSGETGSEE 74
           N +SGE+ SEE
Sbjct: 131 NKQSGESASEE 141

[Close]
BLAST of CmaCh17G003610 vs. TrEMBL
Match: V9HZW1_IPOBA (Putative 60S ribosomal protein L29 OS=Ipomoea batatas GN=RPL29 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.1e-22
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 73
          MAKSKNHTAHNQS KAH+NGIKKPRKHRHTSTKGMDPKFLRNQRYA+KHNNKSGE GS E
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNNKSGEAGSGE 60

Query: 74 E 75
          E
Sbjct: 61 E 61

[Close]
BLAST of CmaCh17G003610 vs. TrEMBL
Match: Q9MAW5_PANGI (Ribosomal protein L29 OS=Panax ginseng GN=RPL29 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.6e-22
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 73
          MAKSKNHTAHNQS KAHRNGIKKPRKHRHTST+GMDPKFLRNQRYA+KHNNK+GE+ +EE
Sbjct: 1  MAKSKNHTAHNQSHKAHRNGIKKPRKHRHTSTRGMDPKFLRNQRYARKHNNKTGESATEE 60

Query: 74 E 75
          E
Sbjct: 61 E 61

[Close]
BLAST of CmaCh17G003610 vs. TrEMBL
Match: A0A118JZE1_CYNCS (Ribosomal protein L29e OS=Cynara cardunculus var. scolymus GN=Ccrd_021908 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-21
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 73
          MAKSKNHTAHNQS KAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYA+KHNN+SGE+ +EE
Sbjct: 1  MAKSKNHTAHNQSHKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNNQSGESAAEE 60

[Close]
BLAST of CmaCh17G003610 vs. TrEMBL
Match: V7B091_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G112200g PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-21
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 73
          MAKSKNHTAHNQS KAH+NGIKKP++HRHTSTKGMDPKFLRNQRYA+KHN KSGET SEE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKSGETASEE 60

Query: 74 E 75
          E
Sbjct: 61 E 61

[Close]
BLAST of CmaCh17G003610 vs. TAIR10
Match: AT3G06680.1 (AT3G06680.1 Ribosomal L29e protein family)

HSP 1 Score: 103.2 bits (256), Expect = 7.0e-23
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 10 VLHEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGET 69
          V+ EMAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGE 
Sbjct: 19 VVTEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGEN 78

Query: 70 GSEEE 75
             EE
Sbjct: 79 AGVEE 83

[Close]
BLAST of CmaCh17G003610 vs. TAIR10
Match: AT3G06700.1 (AT3G06700.1 Ribosomal L29e protein family)

HSP 1 Score: 100.9 bits (250), Expect = 3.5e-22
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 73
          MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE  S E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 74 E 75
          E
Sbjct: 61 E 61

[Close]
BLAST of CmaCh17G003610 vs. NCBI nr
Match: gi|976902249|gb|KVH90203.1| (hypothetical protein Ccrd_007767 [Cynara cardunculus var. scolymus])

HSP 1 Score: 112.5 bits (280), Expect = 3.3e-22
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 1 

Query: 3   LDFNVEDVLHEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKH 62
           +DF  + V  EMAKSKNHTAHNQS KAHRNGIKKPRKHRHTSTKGMDPKF RNQRYA+KH
Sbjct: 71  IDFYQQFVKEEMAKSKNHTAHNQSHKAHRNGIKKPRKHRHTSTKGMDPKFSRNQRYARKH 130

Query: 63  NNKSGETGSEE 74
           N +SGE+ SEE
Sbjct: 131 NKQSGESASEE 141

[Close]
BLAST of CmaCh17G003610 vs. NCBI nr
Match: gi|317134435|gb|ADV02780.1| (putative 60S ribosomal protein L29 [Ipomoea batatas])

HSP 1 Score: 111.3 bits (277), Expect = 7.2e-22
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 73
          MAKSKNHTAHNQS KAH+NGIKKPRKHRHTSTKGMDPKFLRNQRYA+KHNNKSGE GS E
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNNKSGEAGSGE 60

Query: 74 E 75
          E
Sbjct: 61 E 61

[Close]
BLAST of CmaCh17G003610 vs. NCBI nr
Match: gi|7959366|dbj|BAA96072.1| (ribosomal protein L29 [Panax ginseng])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 73
          MAKSKNHTAHNQS KAHRNGIKKPRKHRHTST+GMDPKFLRNQRYA+KHNNK+GE+ +EE
Sbjct: 1  MAKSKNHTAHNQSHKAHRNGIKKPRKHRHTSTRGMDPKFLRNQRYARKHNNKTGESATEE 60

Query: 74 E 75
          E
Sbjct: 61 E 61

[Close]
BLAST of CmaCh17G003610 vs. NCBI nr
Match: gi|659117000|ref|XP_008458371.1| (PREDICTED: 60S ribosomal protein L29-1-like [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-21
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 73
          MAKSKNHTAHNQS KAH+NGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE  S E
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60

Query: 74 E 75
          E
Sbjct: 61 E 61

[Close]
BLAST of CmaCh17G003610 vs. NCBI nr
Match: gi|976913598|gb|KVH99849.1| (Ribosomal protein L29e [Cynara cardunculus var. scolymus])

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-21
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 14 MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 73
          MAKSKNHTAHNQS KAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYA+KHNN+SGE+ +EE
Sbjct: 1  MAKSKNHTAHNQSHKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNNQSGESAAEE 60

The following BLAST results are available for this feature:
BLAST of CmaCh17G003610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL291_ARATH6.1e-2181.9760S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1[more]
RL292_ARATH1.0e-2081.9760S ribosomal protein L29-2 OS=Arabidopsis thaliana GN=RPL29B PE=2 SV=2[more]
RL29_BOVIN2.9e-1578.8560S ribosomal protein L29 OS=Bos taurus GN=RPL29 PE=2 SV=3[more]
RL29_HUMAN2.9e-1578.8560S ribosomal protein L29 OS=Homo sapiens GN=RPL29 PE=1 SV=2[more]
RL29_MACFA2.9e-1578.8560S ribosomal protein L29 OS=Macaca fascicularis GN=RPL29 PE=2 SV=3[more]
BLAST of CmaCh17G003610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A103XGF8_CYNCS2.3e-2280.28Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_007767 PE=4 ... [more]
V9HZW1_IPOBA5.1e-2291.80Putative 60S ribosomal protein L29 OS=Ipomoea batatas GN=RPL29 PE=2 SV=1[more]
Q9MAW5_PANGI8.6e-2288.52Ribosomal protein L29 OS=Panax ginseng GN=RPL29 PE=2 SV=1[more]
A0A118JZE1_CYNCS1.5e-2190.00Ribosomal protein L29e OS=Cynara cardunculus var. scolymus GN=Ccrd_021908 PE=4 S... [more]
V7B091_PHAVU2.5e-2188.52Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G112200g PE=4 SV=1[more]
BLAST of CmaCh17G003610 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06680.17.0e-2380.00 Ribosomal L29e protein family[more]
AT3G06700.13.5e-2281.97 Ribosomal L29e protein family[more]
BLAST of CmaCh17G003610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|976902249|gb|KVH90203.1|3.3e-2280.28hypothetical protein Ccrd_007767 [Cynara cardunculus var. scolymus][more]
gi|317134435|gb|ADV02780.1|7.2e-2291.80putative 60S ribosomal protein L29 [Ipomoea batatas][more]
gi|7959366|dbj|BAA96072.1|1.2e-2188.52ribosomal protein L29 [Panax ginseng][more]
gi|659117000|ref|XP_008458371.1|1.6e-2191.80PREDICTED: 60S ribosomal protein L29-1-like [Cucumis melo][more]
gi|976913598|gb|KVH99849.1|2.1e-2190.00Ribosomal protein L29e [Cynara cardunculus var. scolymus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002673Ribosomal_L29e
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G003610.1CmaCh17G003610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002673Ribosomal protein L29ePRODOMPD010314coord: 14..65
score: 7.0
IPR002673Ribosomal protein L29ePANTHERPTHR1288460S RIBOSOMAL PROTEIN L29coord: 15..74
score: 3.6
IPR002673Ribosomal protein L29ePFAMPF01779Ribosomal_L29ecoord: 16..55
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G003610Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G003610Cucurbita pepo (Zucchini)cmacpeB377
CmaCh17G003610Cucurbita pepo (Zucchini)cmacpeB403
CmaCh17G003610Cucurbita pepo (Zucchini)cmacpeB412
CmaCh17G003610Bottle gourd (USVL1VR-Ls)cmalsiB331
CmaCh17G003610Bottle gourd (USVL1VR-Ls)cmalsiB344
CmaCh17G003610Bottle gourd (USVL1VR-Ls)cmalsiB350
CmaCh17G003610Bottle gourd (USVL1VR-Ls)cmalsiB353
CmaCh17G003610Cucumber (Gy14) v2cgybcmaB345
CmaCh17G003610Cucumber (Gy14) v2cgybcmaB762
CmaCh17G003610Melon (DHL92) v3.6.1cmamedB365
CmaCh17G003610Melon (DHL92) v3.6.1cmamedB398
CmaCh17G003610Silver-seed gourdcarcmaB0091
CmaCh17G003610Silver-seed gourdcarcmaB0392
CmaCh17G003610Silver-seed gourdcarcmaB0985
CmaCh17G003610Cucumber (Chinese Long) v3cmacucB0421
CmaCh17G003610Cucumber (Chinese Long) v3cmacucB0425
CmaCh17G003610Cucumber (Chinese Long) v3cmacucB0450
CmaCh17G003610Watermelon (97103) v2cmawmbB359
CmaCh17G003610Watermelon (97103) v2cmawmbB363
CmaCh17G003610Watermelon (97103) v2cmawmbB366
CmaCh17G003610Watermelon (97103) v2cmawmbB377
CmaCh17G003610Wax gourdcmawgoB0453
CmaCh17G003610Wax gourdcmawgoB0458
CmaCh17G003610Wax gourdcmawgoB0470
CmaCh17G003610Wax gourdcmawgoB0473
CmaCh17G003610Cucurbita maxima (Rimu)cmacmaB246
CmaCh17G003610Cucurbita maxima (Rimu)cmacmaB249
CmaCh17G003610Cucurbita maxima (Rimu)cmacmaB373
CmaCh17G003610Cucurbita maxima (Rimu)cmacmaB367
CmaCh17G003610Cucurbita maxima (Rimu)cmacmaB369
CmaCh17G003610Cucumber (Gy14) v1cgycmaB0183
CmaCh17G003610Cucumber (Gy14) v1cgycmaB0714
CmaCh17G003610Cucurbita moschata (Rifu)cmacmoB350
CmaCh17G003610Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G003610Cucurbita moschata (Rifu)cmacmoB363
CmaCh17G003610Cucurbita moschata (Rifu)cmacmoB365
CmaCh17G003610Wild cucumber (PI 183967)cmacpiB357
CmaCh17G003610Wild cucumber (PI 183967)cmacpiB359
CmaCh17G003610Wild cucumber (PI 183967)cmacpiB382
CmaCh17G003610Cucumber (Chinese Long) v2cmacuB353
CmaCh17G003610Cucumber (Chinese Long) v2cmacuB355
CmaCh17G003610Cucumber (Chinese Long) v2cmacuB378
CmaCh17G003610Melon (DHL92) v3.5.1cmameB313
CmaCh17G003610Melon (DHL92) v3.5.1cmameB342
CmaCh17G003610Watermelon (Charleston Gray)cmawcgB320
CmaCh17G003610Watermelon (Charleston Gray)cmawcgB313
CmaCh17G003610Watermelon (Charleston Gray)cmawcgB317
CmaCh17G003610Watermelon (Charleston Gray)cmawcgB328
CmaCh17G003610Watermelon (97103) v1cmawmB335
CmaCh17G003610Watermelon (97103) v1cmawmB344
CmaCh17G003610Watermelon (97103) v1cmawmB348
CmaCh17G003610Watermelon (97103) v1cmawmB358