CmaCh17G003430 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G003430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr17 : 1865398 .. 1865646 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCTCGTGCTGACCTGGCAAAGATTGGACGAGAAGGATTCGAACTAATTGACGAATACTTCGGTCGAGTACCGGCGACGAGAAGACCGGCGGCGGCGGCGAGGCCGGCTCTGCCGCAGGCGCCGTGTAAGGCGGAACAACCTCCGAGGAAGATGAGAGAAAAGCTGCCTGTGCCGGTGAACTGCAATCAGGTCGCCAGAGCCCGCGGCGGAGTTGTGATAACGACTTGGCGTGCGGCAAAATGA

mRNA sequence

ATGGCTCCTCGTGCTGACCTGGCAAAGATTGGACGAGAAGGATTCGAACTAATTGACGAATACTTCGGTCGAGTACCGGCGACGAGAAGACCGGCGGCGGCGGCGAGGCCGGCTCTGCCGCAGGCGCCGTGTAAGGCGGAACAACCTCCGAGGAAGATGAGAGAAAAGCTGCCTGTGCCGGTGAACTGCAATCAGGTCGCCAGAGCCCGCGGCGGAGTTGTGATAACGACTTGGCGTGCGGCAAAATGA

Coding sequence (CDS)

ATGGCTCCTCGTGCTGACCTGGCAAAGATTGGACGAGAAGGATTCGAACTAATTGACGAATACTTCGGTCGAGTACCGGCGACGAGAAGACCGGCGGCGGCGGCGAGGCCGGCTCTGCCGCAGGCGCCGTGTAAGGCGGAACAACCTCCGAGGAAGATGAGAGAAAAGCTGCCTGTGCCGGTGAACTGCAATCAGGTCGCCAGAGCCCGCGGCGGAGTTGTGATAACGACTTGGCGTGCGGCAAAATGA

Protein sequence

MAPRADLAKIGREGFELIDEYFGRVPATRRPAAAARPALPQAPCKAEQPPRKMREKLPVPVNCNQVARARGGVVITTWRAAK

Homology

[Close]

BLAST of CmaCh17G003430 vs. TrEMBL
Match: A0A0A0KG95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.6e-16
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1


Query: 4  RADLAKIGREGFELIDEYFGRVPAT--RRPAA-AARPALPQAPCKAEQPPRKMREKLPVP 63
          R DLAKIGREGF++IDEYFGR  +T  RR AA  ARPALPQ P KAEQPPR  +EK    
Sbjct: 13 RGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPRIRKEKPVAA 72

Query: 64 VNCNQVARARGGVVITTWR 80
          V  +QVA+  GG VITTWR
Sbjct: 73 VTSDQVAKHGGGTVITTWR 91

[Close]

BLAST of CmaCh17G003430 vs. TrEMBL
Match: A0A0A0KI19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-10
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1


Query: 5  ADLAKIGREGFELIDEYFGRVPAT--RRPAAAA--RPALPQAPCK-AEQPPRKMREKLPV 64
          A+LA+IG EGF+LID++FGR   T  RR  AA   RPA  Q P K AEQPP K +EK   
Sbjct: 13 ANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPPSKTKEKQGA 72

Query: 65 PVNCNQVARARGGVVITTWRA 81
           V  + +A+ RGG+VITTWR+
Sbjct: 73 VVTSDHLAKTRGGIVITTWRS 93

[Close]

BLAST of CmaCh17G003430 vs. NCBI nr
Match: gi|700192218|gb|KGN47422.1| (hypothetical protein Csa_6G318690 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 6.6e-16
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1


Query: 4  RADLAKIGREGFELIDEYFGRVPAT--RRPAA-AARPALPQAPCKAEQPPRKMREKLPVP 63
          R DLAKIGREGF++IDEYFGR  +T  RR AA  ARPALPQ P KAEQPPR  +EK    
Sbjct: 13 RGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPRIRKEKPVAA 72

Query: 64 VNCNQVARARGGVVITTWR 80
          V  +QVA+  GG VITTWR
Sbjct: 73 VTSDQVAKHGGGTVITTWR 91

[Close]

BLAST of CmaCh17G003430 vs. NCBI nr
Match: gi|700192217|gb|KGN47421.1| (hypothetical protein Csa_6G318680 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 5.4e-10
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1


Query: 5  ADLAKIGREGFELIDEYFGRVPAT--RRPAAAA--RPALPQAPCK-AEQPPRKMREKLPV 64
          A+LA+IG EGF+LID++FGR   T  RR  AA   RPA  Q P K AEQPP K +EK   
Sbjct: 13 ANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPPSKTKEKQGA 72

Query: 65 PVNCNQVARARGGVVITTWRA 81
           V  + +A+ RGG+VITTWR+
Sbjct: 73 VVTSDHLAKTRGGIVITTWRS 93

The following BLAST results are available for this feature:

BLAST of CmaCh17G003430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G003430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG95_CUCSA	4.6e-16	65.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318690 PE=4 SV=1	[more]
A0A0A0KI19_CUCSA	3.8e-10	54.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318680 PE=4 SV=1	[more]

BLAST of CmaCh17G003430 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh17G003430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192218\|gb\|KGN47422.1\|	6.6e-16	65.82	hypothetical protein Csa_6G318690 [Cucumis sativus]	[more]
gi\|700192217\|gb\|KGN47421.1\|	5.4e-10	54.32	hypothetical protein Csa_6G318680 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G003430.1	CmaCh17G003430.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G003430	Melon (DHL92) v3.6.1	cmamedB365
CmaCh17G003430	Melon (DHL92) v3.6.1	cmamedB397
CmaCh17G003430	Melon (DHL92) v3.6.1	cmamedB398
CmaCh17G003430	Silver-seed gourd	carcmaB0091
CmaCh17G003430	Silver-seed gourd	carcmaB0392
CmaCh17G003430	Silver-seed gourd	carcmaB0985
CmaCh17G003430	Cucumber (Chinese Long) v3	cmacucB0421
CmaCh17G003430	Cucumber (Chinese Long) v3	cmacucB0425
CmaCh17G003430	Cucumber (Chinese Long) v3	cmacucB0450
CmaCh17G003430	Watermelon (97103) v2	cmawmbB363
CmaCh17G003430	Watermelon (97103) v2	cmawmbB366
CmaCh17G003430	Watermelon (97103) v2	cmawmbB377
CmaCh17G003430	Wax gourd	cmawgoB0464
CmaCh17G003430	Wax gourd	cmawgoB0473
CmaCh17G003430	Cucurbita maxima (Rimu)	cmacmaB246
CmaCh17G003430	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh17G003430	Cucurbita maxima (Rimu)	cmacmaB373
CmaCh17G003430	Cucurbita maxima (Rimu)	cmacmaB369
CmaCh17G003430	Cucumber (Gy14) v1	cgycmaB0111
CmaCh17G003430	Cucumber (Gy14) v1	cgycmaB0183
CmaCh17G003430	Cucumber (Gy14) v1	cgycmaB0714
CmaCh17G003430	Cucurbita moschata (Rifu)	cmacmoB350
CmaCh17G003430	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G003430	Cucurbita moschata (Rifu)	cmacmoB365
CmaCh17G003430	Wild cucumber (PI 183967)	cmacpiB357
CmaCh17G003430	Wild cucumber (PI 183967)	cmacpiB359
CmaCh17G003430	Wild cucumber (PI 183967)	cmacpiB382
CmaCh17G003430	Cucumber (Chinese Long) v2	cmacuB353
CmaCh17G003430	Cucumber (Chinese Long) v2	cmacuB355
CmaCh17G003430	Cucumber (Chinese Long) v2	cmacuB378
CmaCh17G003430	Melon (DHL92) v3.5.1	cmameB313
CmaCh17G003430	Melon (DHL92) v3.5.1	cmameB341
CmaCh17G003430	Melon (DHL92) v3.5.1	cmameB342
CmaCh17G003430	Watermelon (Charleston Gray)	cmawcgB320
CmaCh17G003430	Watermelon (Charleston Gray)	cmawcgB317
CmaCh17G003430	Watermelon (Charleston Gray)	cmawcgB328
CmaCh17G003430	Watermelon (97103) v1	cmawmB344
CmaCh17G003430	Watermelon (97103) v1	cmawmB348
CmaCh17G003430	Watermelon (97103) v1	cmawmB358
CmaCh17G003430	Cucurbita pepo (Zucchini)	cmacpeB370
CmaCh17G003430	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G003430	Cucurbita pepo (Zucchini)	cmacpeB377
CmaCh17G003430	Cucurbita pepo (Zucchini)	cmacpeB403
CmaCh17G003430	Cucurbita pepo (Zucchini)	cmacpeB412
CmaCh17G003430	Bottle gourd (USVL1VR-Ls)	cmalsiB331
CmaCh17G003430	Bottle gourd (USVL1VR-Ls)	cmalsiB344
CmaCh17G003430	Bottle gourd (USVL1VR-Ls)	cmalsiB350
CmaCh17G003430	Bottle gourd (USVL1VR-Ls)	cmalsiB353
CmaCh17G003430	Cucumber (Gy14) v2	cgybcmaB345
CmaCh17G003430	Cucumber (Gy14) v2	cgybcmaB762