CmaCh17G002500 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G002500
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cyclin-T1-4
Location	Cma_Chr17 : 1284176 .. 1285907 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTAACATATATCATATGATAATGATATTATCGGCAATCTTCCAGAGATTCTTGGAAATATTCTACCTGAGTTGCTGCTTTTTAGTTGGTAAGAAAAAACAATTTACTTTTATTCATTTGAAGTGAATGCTTGAAAGTTACTTTGCTCCTACTCTTAGTTTTTATTGTTATATACAATTGTGTATTTGGAGCTGATGTATTTTTTTGTTTTGAAGTACTGTTAGACATTGCCATCCTATTTAGTAATGGACTCAGATGGTTTGTTTAACTGTTTGATGCGTTCTTCAACAAGTGATGGTGGTAGTGGCAGTTGTATGGAAGGCTGATATGTGGTTTTTTTAGGCTAAGGAGCTCACTCTGGCTTCAGTTTAAGCCCCATCAGATAGCTGCTGGAGCTGCATATCTGTCTGCCAAGCTACTGCATGTGGATTTTGCTCCTTATCAAAATATCTTGCAAGAGTTCCAAGCAACGCCTGCTATTCTCCAAGGTACCTTGAAGAACTTCTGAATATTTTCTCACGTCCTATTATGTGATTGCTTTAAAAATTAAGATAACACTAACCATTTCTTCATTTTATTTTCACTCCTAAAATCGTGTGTTCAAGTCCTAGCCACGTTTATAGAGCAAAAAGTAGGTCTTGTTTGAGATATCATCTTTTTAGTTCAATATGTTTTTATTATTGAAAGATGTTTTCTATAGTTATGATCAGAGTTCAAGATTATATTGTAGTTGGAAATGATAACTTACAAGTGGGATTTTAGTAGAGCAAATTTAATTTTGAGAATAAACATATGATCCATGGAAATAAGCTATTGAAAAGTAAGAGAAATTCTCTTAGAAAGATAAGTTACTACCCATATTTGTTGTAGAAAACAGAATATTAGTTTTGAAAACAATCTCTTGAGCCCAACCTCTGGGCATGGGCTTTGAAAGGATAGGGGTGTGTTTTTGCCAGGCTTGTTGTAAGAATTTTGTGGTTATAATTCTTGTTTTACTTACTCAGGGGCTTGTTTTAGAATCTCAATGTTTGTCTTTGAAAAGAAGCTCCCAAGTTATGACGTGGTTTGTTTTTCACTCATGCTAAAATGCAGATGTGGCCCAGCAGTTGATGGAGCTTTTCTAAAGTGAAAGCTCGATAATGATGAAGCTTTTAGTCTGGTGAAATGATGTGCAATGATGGGTAAACATAACATATTTATGATTTAACATGAATCCTGACAGTCTTAAATGGTTAAATCCTGACAGTTTCCTTAGGTTATGTAGTGACTGTTGGTAGTTTTAACATGAATGGTTCTCAATTCATTTCCATGTGCAAAACAGTGGTTTAGAAGTACCGTAGGAAGACCTGTACTCAATTGGCGAACGGATGGTTATGTTATACAAAATGGCTCGCTTCTGATCTGCTCTGCTCTCTCCTTTAAATGTCATTGCCTTTTGATTCCTTTTTTTATTTATAGTCGTTCCGTCGTACATCTATTCCATAATGTTAGAATAGTTGATCCGCAGATATTCTCTTTTTTGGGCTTTCCCTTTCAAGCTCCTTCTCATGGTTTTAAAATGTGTCTTCTAGGGAAAAGTTTTCACATCTAGAGAATGTTTTGTTTTCCTCTTCAACCGATGTAAGATCTCACAATCCACCTCTTTTGGTGCTCATAGTCCCCGTTGACATTGATACCATTTGTAACAGCTCAAACTTCACTAACTTCTTTGAGTTTTTCCTTCTAG

mRNA sequence

ATGGGGTTTAACATATATCATATGATAATGATATTATCGGCAATCTTCCAGAGATTCTTGGAAATATTCTACCTGAGTTGCTGCTTTTTAGTTGTACTGTTAGACATTGCCATCCTATTTAGTAATGGACTCAGATGGCTAAGGAGCTCACTCTGGCTTCAGTTTAAGCCCCATCAGATAGCTGCTGGAGCTGCATATCTGTCTGCCAAGCTACTGCATGTGGATTTTGCTCCTTATCAAAATATCTTGCAAGAGTTCCAAGCAACGCCTGCTATTCTCCAAGATGTGGCCCAGCAGTTGATGGAGCTTTTCTAAAGTGAAAGCTCGATAATGATGAAGCTTTTAGTCTGGTGAAATGATGTGCAATGATGGGTAAACATAACATATTTATGATTTAACATGAATCCTGACAGTCTTAAATGGTTAAATCCTGACAGTTTCCTTAGGTTATGTAGTGACTGTTGGTAGTTTTAACATGAATGGTTCTCAATTCATTTCCATGTGCAAAACAGTGGTTTAGAAGTACCGTAGGAAGACCTGTACTCAATTGGCGAACGGATGGTTATGTTATACAAAATGGCTCGCTTCTGATCTGCTCTGCTCTCTCCTTTAAATGTCATTGCCTTTTGATTCCTTTTTTTATTTATAGTCGTTCCGTCGTACATCTATTCCATAATGTTAGAATAGTTGATCCGCAGATATTCTCTTTTTTGGGCTTTCCCTTTCAAGCTCCTTCTCATGGTTTTAAAATGTGTCTTCTAGGGAAAAGTTTTCACATCTAGAGAATGTTTTGTTTTCCTCTTCAACCGATGTAAGATCTCACAATCCACCTCTTTTGGTGCTCATAGTCCCCGTTGACATTGATACCATTTGTAACAGCTCAAACTTCACTAACTTCTTTGAGTTTTTCCTTCTAG

Coding sequence (CDS)

ATGGGGTTTAACATATATCATATGATAATGATATTATCGGCAATCTTCCAGAGATTCTTGGAAATATTCTACCTGAGTTGCTGCTTTTTAGTTGTACTGTTAGACATTGCCATCCTATTTAGTAATGGACTCAGATGGCTAAGGAGCTCACTCTGGCTTCAGTTTAAGCCCCATCAGATAGCTGCTGGAGCTGCATATCTGTCTGCCAAGCTACTGCATGTGGATTTTGCTCCTTATCAAAATATCTTGCAAGAGTTCCAAGCAACGCCTGCTATTCTCCAAGATGTGGCCCAGCAGTTGATGGAGCTTTTCTAA

Protein sequence

MGFNIYHMIMILSAIFQRFLEIFYLSCCFLVVLLDIAILFSNGLRWLRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNILQEFQATPAILQDVAQQLMELF

Homology

[Close]

BLAST of CmaCh17G002500 vs. Swiss-Prot
Match: CCT12_ARATH (Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 47  LRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNIL-QEFQATPAILQDVAQQLMELF 105
           LR++L LQ++PH IAAGA  L+A+L  VD   Y+ +L QEF  TP  L+D+  Q++EL+
Sbjct: 205 LRTTLCLQYQPHHIAAGAILLAAELPTVDLQSYREVLCQEFDITPCQLEDIRGQILELY 263

[Close]

BLAST of CmaCh17G002500 vs. Swiss-Prot
Match: CCT15_ARATH (Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 4.2e-07
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1


Query: 47  LRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNIL--QEFQATPAILQDVAQQLMELF 105
           LR+SL LQFKPH IAAGA +L+AK L V        +  QEF  TP  L+DV+ Q++EL+
Sbjct: 208 LRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELY 267

[Close]

BLAST of CmaCh17G002500 vs. Swiss-Prot
Match: CCT13_ORYSJ (Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1


Query: 47  LRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNIL--QEFQATPAILQDVAQQLMELF 105
           LR+SL LQFKPH IAAGA +L+AK L V        +  QEF  TP  L++V+ Q++EL+
Sbjct: 212 LRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELY 271

[Close]

BLAST of CmaCh17G002500 vs. Swiss-Prot
Match: CCT14_ORYSJ (Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1


Query: 47  LRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNIL--QEFQATPAILQDVAQQLMELF 105
           LR+SL LQFKPH IAAGA +L+AK L V        +  QEF  TP  L++V+ Q++EL+
Sbjct: 211 LRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELY 270

[Close]

BLAST of CmaCh17G002500 vs. TrEMBL
Match: A0A0A0KEU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425065 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-22
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 33  LLDIAILFSNGLRWLRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNILQEFQATPAI 92
           +L   +LFS    WLRSSLWLQFKP QIAAGAAYLSAKLL++DFAPYQNILQEFQATPAI
Sbjct: 18  ILPELLLFS----WLRSSLWLQFKPQQIAAGAAYLSAKLLNMDFAPYQNILQEFQATPAI 77

Query: 93  LQDVAQQLMELF 105
           LQDVAQQLMELF
Sbjct: 78  LQDVAQQLMELF 85

[Close]

BLAST of CmaCh17G002500 vs. TrEMBL
Match: D7T6V0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03070 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.6e-19
Identity = 60/98 (61.22%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 8   MIMILSAIF-QRFLEIFYLSCCFLVVLLDIAILFSNGLRWLRSSLWLQFKPHQIAAGAAY 67
           ++++LSAI      +IF+L CC          +FS    WLRSSLWLQFKPH IAAGAAY
Sbjct: 5   ILVLLSAISADESWKIFHLGCC----------IFS----WLRSSLWLQFKPHHIAAGAAY 64

Query: 68  LSAKLLHVDFAPYQNILQEFQATPAILQDVAQQLMELF 105
           L+AK+L++D A YQ I QEFQ TPAILQDVAQQLMELF
Sbjct: 65  LAAKILNLDVASYQYIWQEFQTTPAILQDVAQQLMELF 88

[Close]

BLAST of CmaCh17G002500 vs. TrEMBL
Match: Q6EEW1_MEDTR (Cyclin T1 OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.8e-18
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 32  VLLDIAI-LFSNGLRWLRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNILQEFQATP 91
           VL+++A+ L S GLR   SSLWLQFKPHQIAAGAAYL+AK L++D A Y+NI QEFQATP
Sbjct: 302 VLVNMALNLVSEGLR---SSLWLQFKPHQIAAGAAYLAAKFLNMDLAAYKNIWQEFQATP 361

Query: 92  AILQDVAQQLMELF 105
           ++LQDV+QQLMELF
Sbjct: 362 SVLQDVSQQLMELF 372

[Close]

BLAST of CmaCh17G002500 vs. TrEMBL
Match: A0A072VQH2_MEDTR (Amino-terminal domain cyclin OS=Medicago truncatula GN=MTR_1g104820 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.8e-18
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 32  VLLDIAI-LFSNGLRWLRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNILQEFQATP 91
           VL+++A+ L S GLR   SSLWLQFKPHQIAAGAAYL+AK L++D A Y+NI QEFQATP
Sbjct: 302 VLVNMALNLVSEGLR---SSLWLQFKPHQIAAGAAYLAAKFLNMDLAAYKNIWQEFQATP 361

Query: 92  AILQDVAQQLMELF 105
           ++LQDV+QQLMELF
Sbjct: 362 SVLQDVSQQLMELF 372

[Close]

BLAST of CmaCh17G002500 vs. TrEMBL
Match: G7IE07_MEDTR (Amino-terminal domain cyclin OS=Medicago truncatula GN=MTR_1g104820 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.8e-18
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 32  VLLDIAI-LFSNGLRWLRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNILQEFQATP 91
           VL+++A+ L S GLR   SSLWLQFKPHQIAAGAAYL+AK L++D A Y+NI QEFQATP
Sbjct: 363 VLVNMALNLVSEGLR---SSLWLQFKPHQIAAGAAYLAAKFLNMDLAAYKNIWQEFQATP 422

Query: 92  AILQDVAQQLMELF 105
           ++LQDV+QQLMELF
Sbjct: 423 SVLQDVSQQLMELF 433

[Close]

BLAST of CmaCh17G002500 vs. TAIR10
Match: AT4G19560.1 (AT4G19560.1 Cyclin family protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 47  LRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNIL-QEFQATPAILQDVAQQLMELF 105
           LR++L LQ++PH IAAGA  L+A+L  VD   Y+ +L QEF  TP  L+D+  Q++EL+
Sbjct: 205 LRTTLCLQYQPHHIAAGAILLAAELPTVDLQSYREVLCQEFDITPCQLEDIRGQILELY 263

[Close]

BLAST of CmaCh17G002500 vs. TAIR10
Match: AT5G45190.2 (AT5G45190.2 Cyclin family protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-08
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1


Query: 47  LRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNIL--QEFQATPAILQDVAQQLMELF 105
           LR+SL LQFKPH IAAGA +L+AK L V        +  QEF  TP  L+DV+ Q++EL+
Sbjct: 219 LRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELY 278

[Close]

BLAST of CmaCh17G002500 vs. TAIR10
Match: AT4G19600.1 (AT4G19600.1 Cyclin family protein)

HSP 1 Score: 50.8 bits (120), Expect = 5.8e-07
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1


Query: 3   FNIYHMIMILSAIFQRFLEIFYLSCCFLVVLLDIAILFSNGLRWLRSSLWLQFKPHQIAA 62
           FN+YH    L    ++F             L  +A  F N    LR+SL LQFKPH IAA
Sbjct: 173 FNVYHPYKPLVEAIKKFKVAQN-------ALAQVAWNFVND--GLRTSLCLQFKPHHIAA 232

Query: 63  GAAYLSAKLLHVDFAPYQNIL--QEFQATPAILQDVAQQLMELF 105
           GA +L+AK L V        +  QEF  TP  L+DV+ Q++EL+
Sbjct: 233 GAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELY 267

[Close]

BLAST of CmaCh17G002500 vs. NCBI nr
Match: gi|700192814|gb|KGN48018.1| (hypothetical protein Csa_6G425065 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-22
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 33  LLDIAILFSNGLRWLRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNILQEFQATPAI 92
           +L   +LFS    WLRSSLWLQFKP QIAAGAAYLSAKLL++DFAPYQNILQEFQATPAI
Sbjct: 18  ILPELLLFS----WLRSSLWLQFKPQQIAAGAAYLSAKLLNMDFAPYQNILQEFQATPAI 77

Query: 93  LQDVAQQLMELF 105
           LQDVAQQLMELF
Sbjct: 78  LQDVAQQLMELF 85

[Close]

BLAST of CmaCh17G002500 vs. NCBI nr
Match: gi|449444781|ref|XP_004140152.1| (PREDICTED: cyclin-T1-5-like isoform X1 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 32  VLLDIAI-LFSNGLRWLRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNILQEFQATP 91
           +L+++A+ L S GLR   SSLWLQFKP QIAAGAAYLSAKLL++DFAPYQNILQEFQATP
Sbjct: 308 ILVNLALNLISEGLR---SSLWLQFKPQQIAAGAAYLSAKLLNMDFAPYQNILQEFQATP 367

Query: 92  AILQDVAQQLMELF 105
           AILQDVAQQLMELF
Sbjct: 368 AILQDVAQQLMELF 378

[Close]

BLAST of CmaCh17G002500 vs. NCBI nr
Match: gi|659097323|ref|XP_008449564.1| (PREDICTED: cyclin-T1-5-like [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 32  VLLDIAI-LFSNGLRWLRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNILQEFQATP 91
           +L+++A+ L S GLR   SSLWLQFKP QIAAGAAYLSAKLL++DFAPYQNILQEFQATP
Sbjct: 306 ILVNLALNLISEGLR---SSLWLQFKPQQIAAGAAYLSAKLLNMDFAPYQNILQEFQATP 365

Query: 92  AILQDVAQQLMELF 105
           AILQDVAQQLMELF
Sbjct: 366 AILQDVAQQLMELF 376

[Close]

BLAST of CmaCh17G002500 vs. NCBI nr
Match: gi|297737020|emb|CBI26221.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-18
Identity = 60/98 (61.22%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 8   MIMILSAIF-QRFLEIFYLSCCFLVVLLDIAILFSNGLRWLRSSLWLQFKPHQIAAGAAY 67
           ++++LSAI      +IF+L CC          +FS    WLRSSLWLQFKPH IAAGAAY
Sbjct: 5   ILVLLSAISADESWKIFHLGCC----------IFS----WLRSSLWLQFKPHHIAAGAAY 64

Query: 68  LSAKLLHVDFAPYQNILQEFQATPAILQDVAQQLMELF 105
           L+AK+L++D A YQ I QEFQ TPAILQDVAQQLMELF
Sbjct: 65  LAAKILNLDVASYQYIWQEFQTTPAILQDVAQQLMELF 88

[Close]

BLAST of CmaCh17G002500 vs. NCBI nr
Match: gi|922406826|ref|XP_013469858.1| (amino-terminal domain cyclin [Medicago truncatula])

HSP 1 Score: 98.6 bits (244), Expect = 6.8e-18
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 32  VLLDIAI-LFSNGLRWLRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNILQEFQATP 91
           VL+++A+ L S GLR   SSLWLQFKPHQIAAGAAYL+AK L++D A Y+NI QEFQATP
Sbjct: 302 VLVNMALNLVSEGLR---SSLWLQFKPHQIAAGAAYLAAKFLNMDLAAYKNIWQEFQATP 361

Query: 92  AILQDVAQQLMELF 105
           ++LQDV+QQLMELF
Sbjct: 362 SVLQDVSQQLMELF 372

The following BLAST results are available for this feature:

BLAST of CmaCh17G002500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCT12_ARATH	1.9e-07	49.15	Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2	[more]
CCT15_ARATH	4.2e-07	51.67	Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2	[more]
CCT13_ORYSJ	1.2e-06	50.00	Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2	[more]
CCT14_ORYSJ	1.2e-06	50.00	Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1	[more]

BLAST of CmaCh17G002500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEU6_CUCSA	2.4e-22	83.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425065 PE=4 SV=1	[more]
D7T6V0_VITVI	9.6e-19	61.22	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03070 PE=4 SV=...	[more]
Q6EEW1_MEDTR	4.8e-18	71.62	Cyclin T1 OS=Medicago truncatula PE=2 SV=1	[more]
A0A072VQH2_MEDTR	4.8e-18	71.62	Amino-terminal domain cyclin OS=Medicago truncatula GN=MTR_1g104820 PE=3 SV=1	[more]
G7IE07_MEDTR	4.8e-18	71.62	Amino-terminal domain cyclin OS=Medicago truncatula GN=MTR_1g104820 PE=3 SV=1	[more]

BLAST of CmaCh17G002500 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19560.1	1.1e-08	49.15	Cyclin family protein	[more]
AT5G45190.2	2.3e-08	51.67	Cyclin family protein	[more]
AT4G19600.1	5.8e-07	39.42	Cyclin family protein	[more]

BLAST of CmaCh17G002500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192814\|gb\|KGN48018.1\|	3.5e-22	83.33	hypothetical protein Csa_6G425065 [Cucumis sativus]	[more]
gi\|449444781\|ref\|XP_004140152.1\|	1.7e-21	81.08	PREDICTED: cyclin-T1-5-like isoform X1 [Cucumis sativus]	[more]
gi\|659097323\|ref\|XP_008449564.1\|	1.7e-21	81.08	PREDICTED: cyclin-T1-5-like [Cucumis melo]	[more]
gi\|297737020\|emb\|CBI26221.3\|	1.4e-18	61.22	unnamed protein product [Vitis vinifera]	[more]
gi\|922406826\|ref\|XP_013469858.1\|	6.8e-18	71.62	amino-terminal domain cyclin [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013763	Cyclin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:1901409	positive regulation of phosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0019901	protein kinase binding
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G002500.1	CmaCh17G002500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013763	Cyclin-like	unknown	SSF47954	Cyclin-like	coord: 33..104 score: 1.2
None	No IPR available	PANTHER	PTHR10026	CYCLIN	coord: 32..104 score: 6.2
None	No IPR available	PANTHER	PTHR10026:SF67	SUBFAMILY NOT NAMED	coord: 32..104 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G002500	ClCG06G006040	Watermelon (Charleston Gray)	cmawcgB328
CmaCh17G002500	CmoCh17G002360	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G002500	CmoCh08G011280	Cucurbita moschata (Rifu)	cmacmoB365
CmaCh17G002500	Cp4.1LG17g01380	Cucurbita pepo (Zucchini)	cmacpeB388
CmaCh17G002500	CsaV3_6G038250	Cucumber (Chinese Long) v3	cmacucB0444
CmaCh17G002500	Cla97C06G115510	Watermelon (97103) v2	cmawmbB377
CmaCh17G002500	CsGy6G022360	Cucumber (Gy14) v2	cgybcmaB755
CmaCh17G002500	Carg05429	Silver-seed gourd	carcmaB0091
CmaCh17G002500	Carg15912	Silver-seed gourd	carcmaB0455

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh17G002500	CmaCh08G011550	Cucurbita maxima (Rimu)	cmacmaB373

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G002500	Cucumber (Gy14) v2	cgybcmaB345
CmaCh17G002500	Cucumber (Gy14) v2	cgybcmaB924
CmaCh17G002500	Melon (DHL92) v3.6.1	cmamedB378
CmaCh17G002500	Melon (DHL92) v3.6.1	cmamedB396
CmaCh17G002500	Melon (DHL92) v3.6.1	cmamedB398
CmaCh17G002500	Silver-seed gourd	carcmaB1047
CmaCh17G002500	Cucumber (Chinese Long) v3	cmacucB0425
CmaCh17G002500	Cucumber (Chinese Long) v3	cmacucB0461
CmaCh17G002500	Watermelon (97103) v2	cmawmbB366
CmaCh17G002500	Watermelon (97103) v2	cmawmbB383
CmaCh17G002500	Watermelon (97103) v2	cmawmbB392
CmaCh17G002500	Wax gourd	cmawgoB0459
CmaCh17G002500	Wax gourd	cmawgoB0473
CmaCh17G002500	Wax gourd	cmawgoB0480
CmaCh17G002500	Wax gourd	cmawgoB0497
CmaCh17G002500	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh17G002500	Cucurbita maxima (Rimu)	cmacmaB361
CmaCh17G002500	Cucurbita maxima (Rimu)	cmacmaB369
CmaCh17G002500	Cucumber (Gy14) v1	cgycmaB0523
CmaCh17G002500	Cucumber (Gy14) v1	cgycmaB0714
CmaCh17G002500	Cucurbita moschata (Rifu)	cmacmoB350
CmaCh17G002500	Cucurbita moschata (Rifu)	cmacmoB362
CmaCh17G002500	Cucurbita moschata (Rifu)	cmacmoB373
CmaCh17G002500	Wild cucumber (PI 183967)	cmacpiB359
CmaCh17G002500	Wild cucumber (PI 183967)	cmacpiB375
CmaCh17G002500	Cucumber (Chinese Long) v2	cmacuB355
CmaCh17G002500	Cucumber (Chinese Long) v2	cmacuB371
CmaCh17G002500	Melon (DHL92) v3.5.1	cmameB340
CmaCh17G002500	Melon (DHL92) v3.5.1	cmameB342
CmaCh17G002500	Watermelon (Charleston Gray)	cmawcgB312
CmaCh17G002500	Watermelon (Charleston Gray)	cmawcgB334
CmaCh17G002500	Watermelon (97103) v1	cmawmB333
CmaCh17G002500	Watermelon (97103) v1	cmawmB341
CmaCh17G002500	Watermelon (97103) v1	cmawmB344
CmaCh17G002500	Watermelon (97103) v1	cmawmB358
CmaCh17G002500	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G002500	Cucurbita pepo (Zucchini)	cmacpeB373
CmaCh17G002500	Bottle gourd (USVL1VR-Ls)	cmalsiB331
CmaCh17G002500	Bottle gourd (USVL1VR-Ls)	cmalsiB347
CmaCh17G002500	Bottle gourd (USVL1VR-Ls)	cmalsiB353
CmaCh17G002500	Bottle gourd (USVL1VR-Ls)	cmalsiB357