CmaCh17G002140 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G002140
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 1103968 .. 1105948 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATATCTCTGTTTTGTGATCGTTGGAGGGTTATGCCTTCCAGCGCTGTTCTTCCTCAATCTGCGATGGCTAATGATTTCGATGGCCCATTGTTCCTCTTCTCTCACCCATTTCCGGTTAGTTTTTCCCCTTTCTGGTATTTTCATGGCTGTTCTTTCTAGGGTTACTTAAGATTTTTCATTTCTTTTCTTGTACACCTTTTTATTCTGTGGCTTTTTCTGAAATGGATTGGTAACTTTTTTTGAGAACTTGATTGGAAAGGACAGAGTGTTTGTTCTTGTTTTGATTGAATTGATAATGGCTGAAAATGTCTGCAAGGAAGTGAACTATGGATGAGAAACCTGTAAAGATTCTAGTAATGGGAGTTTCTTGTTTGAATGTGATAGCAGTTCTGGGTGGAAGCAGGCTCTTTCTGATCATGATGATGGTGACTTTTCCAAGTTTCTCCCCTGCATTAGACCCAAATGTAAGATTCCTTTCTCTTTCTATATCTCCTACGAAGCTTTTCTGTGAAAAATAGCTGGGTTTTTAGCCATAGTTGCTATTTCATCTGCTTGCTGCAATCCATAGCTGTTTGATTCTGCCAAATGGGACTTGTTTTTGTTTGATGAATGTATTTGCCAAAAGTTACTGCAGAGGTGGCTGGTAAGATGTAGATTTAGGCCGTCACAATTGCATTTTCGCGATTGTGCGGCACTCACTCTATGGACTGAGTGAGTCAAGCCAACTTAGGATTGTGTCACCTATGGTCGGGCAATGTATGCTCAGGTCTTTGGCCCCATTTTGAGAAAACGGGCAGAGAGATTTTGAAAAAGAGTTTGAAAAGCAAAATTGAGTGAAAAATTGAAAACAATGTTACATGACTACCAGCAAAATATAATACCATGGCTTAAATAACATATAACTTTCTGGGTAGGGAGAATTTGACACCTAGTAGCATCCCCCTATATTACATTTTGAGGCAATTCAGGTCGGGTAGGCTTAGACGTGATTTTGCTTAACGGTCATACAAAATCTAGGTGGAAGGAGTTGATGACTGTCGCATTTCCCTGTAGTACATTTTAGGGTATTTCATGTCTACCAAGTGTAGATATGATTATGACGAAACGTCATTCACTTAGAAAAGACAAGAAGGAAATTATACTTCATGATAGGAAGCTAGAATTTTGGCATTCAACGAGCATGTGGCCATAGGCAACACACCTTGGACAAACATGACCGTGACACTGTGATTTCAGATTCATATTCATGTGAAAGAAAAAAGTACTAAATTTTTATGAATTCTAATGTTAGACTACCCATTTCAAAATTGGTATTACGTGATGGTCTGACAAGATTTTGGTTAAAGGCGACACATAAATTTAATGGTAAAGTTGGCCGAAGATATGAAACACATCAACAATGCTTATAGCTAAGGTTGCAGCTAAGAACAAAGATGTCTTCGAAACTCCATGTGCAGATGATAAAGGCCCTGTTGGATTTAACTTATTTGGATGAGTACATATTCATCATATTCAAGGTTCTATGGGTCTTGATCTTGATTATTATGATCATATATCTGATGGTACTAGAATTGAACATCTCACTGCTTTGAACAATGCTGATAGGCATTAGATTTTTACCGTTGATGCCACGTAATCTAACTTGCCCGGTACTTTTCGACCCCTCCATTGGGCGTACAGACCAAACTAAGAACTAATGAATCGATATTCGTTTGTAATGACCAATCCTATGTTTTTGGTGAATATGAAAGCTTATTTACTTGATGTCTTTCTTGTTGCTGTATAGCTTGTCGATGGGTCGACTGTGAAGGCGGTTCGTGCAACAAGACGTCGTGGTTGGCATACAAATGTGGTTGTTTGAAGGGCTAACACTGCCTTTCCATGCTTATTCTGAGTTGTGTTTGATACTCAATTTGAAGGCTCAATGAGTATGGATTCCAAGGACCCTTCTGCTACAAATAACAATAATGGCTAG

mRNA sequence

ATGGCCATATCTCTGTTTTGTGATCGTTGGAGGGTTATGCCTTCCAGCGCTGTTCTTCCTCAATCTGCGATGGCTAATGATTTCGATGGCCCATTGTTCCTCTTCTCTCACCCATTTCCGGTTAGTTTTTCCCCTTTCTGTTCTGGGTGGAAGCAGGCTCTTTCTGATCATGATGATGGTGACTTTTCCAAGTTTCTCCCCTGCATTAGACCCAAATGCTCAATGAGTATGGATTCCAAGGACCCTTCTGCTACAAATAACAATAATGGCTAG

Coding sequence (CDS)

ATGGCCATATCTCTGTTTTGTGATCGTTGGAGGGTTATGCCTTCCAGCGCTGTTCTTCCTCAATCTGCGATGGCTAATGATTTCGATGGCCCATTGTTCCTCTTCTCTCACCCATTTCCGGTTAGTTTTTCCCCTTTCTGTTCTGGGTGGAAGCAGGCTCTTTCTGATCATGATGATGGTGACTTTTCCAAGTTTCTCCCCTGCATTAGACCCAAATGCTCAATGAGTATGGATTCCAAGGACCCTTCTGCTACAAATAACAATAATGGCTAG

Protein sequence

MAISLFCDRWRVMPSSAVLPQSAMANDFDGPLFLFSHPFPVSFSPFCSGWKQALSDHDDGDFSKFLPCIRPKCSMSMDSKDPSATNNNNG
Homology
[Close]
BLAST of CmaCh17G002140 vs. TrEMBL
Match: A0A0A0LKT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G222120 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.1e-06
Identity = 44/111 (39.64%), Postives = 50/111 (45.05%), Query Frame = 1 

Query: 1   MAISLFCDRWRVMPSSAV-LP-----QSAMANDFDGPLFLFSHPFPVSFSPFC------- 60
           MAISLFCDRWRVM S  + LP     QSA A+D +  L     P    F   C       
Sbjct: 1   MAISLFCDRWRVMASIVLALPLLLVFQSAKADDLNDLLSPLLSPI---FENVCKEVNCGK 60

Query: 61  ------------------SGWKQALSDHDDGD----FSKFLPCIRPKCSMS 77
                             SGWKQ L D DD D      KFLPCI PKC+++
Sbjct: 61  GTCKTSGNGSFSFECDCDSGWKQTLFDDDDTDDDSNHFKFLPCIIPKCNLT 108

[Close]
BLAST of CmaCh17G002140 vs. NCBI nr
Match: gi|659096852|ref|XP_008449322.1| (PREDICTED: protein jagged-1 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 8.0e-07
Identity = 44/109 (40.37%), Postives = 51/109 (46.79%), Query Frame = 1 

Query: 1   MAISLFCDRWRVMPSSAV------LPQSAMANDFDGPLFLFSHPFPVSFSPFC------- 60
           MAISLFCDRWRVM S  V      + QSA A+DF+  L     P    F   C       
Sbjct: 36  MAISLFCDRWRVMASIVVALALLLVFQSAKADDFNDLLSPLLSPI---FENVCKEVNCGK 95

Query: 61  ------------------SGWKQALSDHDDGDFS--KFLPCIRPKCSMS 77
                             SGWKQ L D DD D +  KFLPCI PKC+++
Sbjct: 96  GTCKTSGNGSFSFECDCESGWKQTLFDDDDDDRNHFKFLPCIIPKCNLT 141

The following BLAST results are available for this feature:
BLAST of CmaCh17G002140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G002140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKT4_CUCSA8.1e-0639.64Uncharacterized protein OS=Cucumis sativus GN=Csa_2G222120 PE=4 SV=1[more]
BLAST of CmaCh17G002140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G002140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096852|ref|XP_008449322.1|8.0e-0740.37PREDICTED: protein jagged-1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G002140.1CmaCh17G002140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G002140Cucumber (Gy14) v1cgycmaB0714
CmaCh17G002140Cucumber (Gy14) v1cgycmaB1074
CmaCh17G002140Cucurbita moschata (Rifu)cmacmoB350
CmaCh17G002140Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G002140Cucurbita moschata (Rifu)cmacmoB362
CmaCh17G002140Cucurbita moschata (Rifu)cmacmoB365
CmaCh17G002140Wild cucumber (PI 183967)cmacpiB354
CmaCh17G002140Wild cucumber (PI 183967)cmacpiB359
CmaCh17G002140Cucumber (Chinese Long) v2cmacuB350
CmaCh17G002140Cucumber (Chinese Long) v2cmacuB355
CmaCh17G002140Melon (DHL92) v3.5.1cmameB339
CmaCh17G002140Melon (DHL92) v3.5.1cmameB342
CmaCh17G002140Watermelon (Charleston Gray)cmawcgB312
CmaCh17G002140Watermelon (Charleston Gray)cmawcgB319
CmaCh17G002140Watermelon (Charleston Gray)cmawcgB328
CmaCh17G002140Watermelon (Charleston Gray)cmawcgB334
CmaCh17G002140Watermelon (97103) v1cmawmB333
CmaCh17G002140Watermelon (97103) v1cmawmB341
CmaCh17G002140Watermelon (97103) v1cmawmB344
CmaCh17G002140Watermelon (97103) v1cmawmB358
CmaCh17G002140Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G002140Cucurbita pepo (Zucchini)cmacpeB373
CmaCh17G002140Cucurbita pepo (Zucchini)cmacpeB388
CmaCh17G002140Cucurbita pepo (Zucchini)cmacpeB402
CmaCh17G002140Cucurbita pepo (Zucchini)cmacpeB411
CmaCh17G002140Bottle gourd (USVL1VR-Ls)cmalsiB331
CmaCh17G002140Bottle gourd (USVL1VR-Ls)cmalsiB347
CmaCh17G002140Bottle gourd (USVL1VR-Ls)cmalsiB356
CmaCh17G002140Bottle gourd (USVL1VR-Ls)cmalsiB357
CmaCh17G002140Cucumber (Gy14) v2cgybcmaB193
CmaCh17G002140Cucumber (Gy14) v2cgybcmaB345
CmaCh17G002140Melon (DHL92) v3.6.1cmamedB393
CmaCh17G002140Melon (DHL92) v3.6.1cmamedB395
CmaCh17G002140Melon (DHL92) v3.6.1cmamedB398
CmaCh17G002140Silver-seed gourdcarcmaB0314
CmaCh17G002140Silver-seed gourdcarcmaB0455
CmaCh17G002140Silver-seed gourdcarcmaB1047
CmaCh17G002140Silver-seed gourdcarcmaB1175
CmaCh17G002140Silver-seed gourdcarcmaB1321
CmaCh17G002140Cucumber (Chinese Long) v3cmacucB0418
CmaCh17G002140Cucumber (Chinese Long) v3cmacucB0425
CmaCh17G002140Watermelon (97103) v2cmawmbB366
CmaCh17G002140Watermelon (97103) v2cmawmbB377
CmaCh17G002140Watermelon (97103) v2cmawmbB383
CmaCh17G002140Watermelon (97103) v2cmawmbB392
CmaCh17G002140Wax gourdcmawgoB0459
CmaCh17G002140Wax gourdcmawgoB0473
CmaCh17G002140Wax gourdcmawgoB0480
CmaCh17G002140Wax gourdcmawgoB0497
CmaCh17G002140Cucurbita maxima (Rimu)cmacmaB249
CmaCh17G002140Cucurbita maxima (Rimu)cmacmaB373
CmaCh17G002140Cucurbita maxima (Rimu)cmacmaB361
CmaCh17G002140Cucurbita maxima (Rimu)cmacmaB369