CmaCh17G001090 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G001090
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 529756 .. 535895 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAATTTGAAGATCATTATTTCTCGACATCCTTAACTACTTCAACCAAGTCTCAAGCTTGCTTCTTCCTCTTCCTCCTCGTTCTTCTCCTCCTCGTCGTTCCTTATCGATTCTCAACTGGGCCGAGCTCCATGGCTTCAACTAGTAATCCATCCCGTCCTCCTTCGTCTAAGGCCATGGCAGAACAAGCCTTCTCTAGACCTCAGTTTGAAGCATCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAAGATTGAAATAAAAATGAAAGAGGGTCATATTAATAGATGATTAATTATTATTATTATGAAATATTTCTATATATATAATTCCTTTGATTAATGTTTATATAATATTAAACTTAGTTTTGTGAAGTACAAATTTTATGAGCCTTTTGTGTGGGGATTTGCTGTTTTTTTTTTTTTTAAGGTTATGATAAATGTGATGATTTTATATGGAGCTTATTAAAAATTATTTTTTTTTATTTCAAATTTTTCCTAAAATTTTAAAAGAAATTAATTTTTTTTAACATGTCACGCCCACGAGAAAATGTAATTCCTAAAATATTAAAAAAAATAAAAAAAATAAAAACTATTCCTGAATTGGCCCAATTCACGGCCCAGTCTCATGGCCCTTATGTAACATTTGCGGAACTACGACTCTCCATAATATACCATAAAGCCGCCTCTCTTAAGGTCTCTTTCTCTGGAGCCCTTGAACAGCCTTCCCTTAATCGAGACTCAACTCTTTCTTGAGAGCCCTCGAACAAAATACTCTTTTTGTTTGCACCTTCGAGACTCACAACTTATAGTTGTTAGATACTTGAGTATTCTATTGACATGACTAAGTTAGAAGTATGACTCTCATACAATGTTAAAAATCACGAGCCTCCACAATGATATAATATTGTCCACTTTGAGCATAAGGTCTCGTGGTTTTACTTTTTGTTTCCTTAAAAGTTCTCGTACCAATAGAGATAGTATTGTAAGATTCCTCTAGATAATCATTCATCATATTTGAATTTAAAATCCTAGTATTCTCCTACCTTGAGTGTTACAAAAACATTTCAACGAGATAATTCTCCTATGTTATTATCTTTTTTATTTATTTTTAAAAATTACGAACGGAACTTTTAAAAATCTTTGAATATAAATTATATAAAATATTGTATATATGCTGACGTTTGACAAATTTGGTATAATTTAACCCTTTCTTTTTCCCTTAGGTTTGAAAAATGAGATATTAAAAGAAAGGAATAATTTATGCTGACGTTTGGTAAATATTTGGGATTGGTGAAAGATTAAATAAATGCACGTGATTACTCACGTGCGGTGGCGCCGATTTAACGCCACTTTTTACAGACGTTGGCGCCTCGGATTCCCTCTGTTTTCCTTTCATTCCATGTTCACTCGCCTTCCTTGCGCGTGAATCTCACCCTCCATTTATTTCATTCGTCTAATTAAATTAAATATTAATTTTTGATATTATCAATAGTACAAATAAAAAATATATTATTTAAAATTTAATAATATGATAACTAAATTATAAATTGTTACATTGTTTTATTTTATTTTGTTATATCTAATAAGTCTAGAAAACAATTTTATAATTTTTAAATCAACTATTTTTTTTATGAATGTTTAAATATTAAAAATATTTCAAATTTATAATTTAAGATTAAGATTTAGGGTTTATAAAAAAAAGAATAATATAGAGACTAAATGGTAAATTGTTACATTGTTTTTACTTTATTTTGTTTTGTTAAAACTCCTATTAGAATAAAAATTATTTAGAATTTAATTAATAATATTATTAAAAAACAACTATTTATCATTCTTAAATATTTTACTTTTAAGTTCCAACTTAAAAAGCAATGACTAAATTAATTATTAAAAAAAAAAAAAGAATTGGCGGTCCGATTCAAGTATTCAACCTCGGGCCAGCCCAACGGTCAAGAATTTAGGTCGGAAGTCAAAGTTTACGGCTTGTCGTGTAATGGGGTTGCGTGAGGTTCACGCACTTAATATGAGAGACCTTTGGAAAGCGCGTGGTAAGCCTGCTGAAGACAAAGGAATCCTTCAAAAAGAGCGGGAACTATTATCATTGGTCCACGTCTGCATTTAATGCCGCTGTTTTGTTTTCTACGCTTCCAAAAATTAATATATTTAGGCGTGATTATCGACGCGTTTGATCCCTTCTTTTTGTAAACAAAATTAATTATGGAAATGAAAATACTAAAAATTAAACCATTTTGTTAATTTATACCTAATTTTAATAAAAAGTGACTTAATAGAATATTGGTAAAAATTCAAATCCACTCCTAGTAAATATTCTCTGTTTTGACTTATTACGTATAGCTATCAACCTTATGATTTTAAAACGCAAATGTTAGAGAGAGGAGGTTTCCACTCTTATAAAAAATGTTTCGTATCCCCTCCAACCGATGACAATATCAACTAGCTGTGGGGTTTGGCTGTTGCAAATGGTATAAGAGTTAGGCACAGGGCAGTGTGCCAACAAGAACGTTGGGACCCCAAAGTGGGTGGATTGTGAATTGTGTGAAAACTTCTTTCTAAAAGATGCATTTTAAAACATTGAGGAGAAACTCACTTGAGAAAGTTCAAAGAGGACAATATCCGTTAACAGTGGGCTTGGGCTTTTACAATATTTCTCCATACAGTTTGAACTAATAATTATTTCGACCAATGAGAAAATTCTAACCCCCGAACTTCATGTAGCTAATTTTTTTACTTAGGTCCAGAGTTACTCACAATATCAGGCTTGTAAAAGTAAAAAGTCCATATATCTCGTGTCATACAAACATGATATTTCTTTTTAGTTTATTTTAATCCTTTAAATTCAAGGAGGGAGGAAGGCTTTATAAAAGCAGCTTTTGACGAGCTCTCAACGTTAATATAAATAATCATATTTTAATACTTGTCCCAACTTTAATCACTACAAAAGTATAGATACTCTTATTTATTGTCTATCCCGTCAATATTATTTTAAAAATGATTCAATTTATTAATATTAAAAAAATAGTTATAAAATAATAACCATAATTTTTACAACTTTTCCCTTTTGCAAATGAGTTGTAACTTGCAAGTAATTATTATAATCAAGTAAATAATAAAAAGGGTGGGGATAAAGTTGGAAAGAAAAGTATCAATTACGTCACAAGTCAAAATAAAGAAATTCCCCCTCTTTGTGGTTTTCATTGGGCCCCCACCTCGTCATGGATTAACTTGCTTTTCAAGGCGCGTGGCGAGCAAACAAAACGGTTCGTGTGACATTCGCTCATTCTCTATTTTAACGCGCGTGGTTTCCACGTTCTTCTTTGTTTTAGTTATATAAAAATTTATATTTATAACTAAAATTGGATGAAACTCAAATATTCATCCATCAAAATAAACACTGATATCAGTTACAAATGTGAAATATTCGATCTTTATAATAATATTAGAAGTAGGATTGAGTTAGATTACAATCCTATTTTTGAGCGGGTCAAGTTAACCCAACTCAAAAAATGTAAACCCACGACCCGAACCCAAAATTTTCAACTTTTCAAAAACTAAACTTAACCTAAATCTAACACAACCCAACTTTTATAGTTTGAGCTAAGTGATTTGGGTCGGTCAGGCTGGAATGTCTTGTTATTTATCTTTTTCCTAATGACGTGGTCATTTAAGCACGGTAAAAAGAATACGTCAAATTTTCATGCTCGTTTTATTTACGAATTTGAAAGTTAGGTAGGTAGTTGTTTCAATATTTGCCTTAAAAAGTTAAATTATAATTCAAACCCGAATTCTAATAATGTGTTTTTGTTGTAGGGTGAAAAGACATCAAAAGTTTCATAATTTTGGTTACAATTTCCCCACTTTCATTGTGAAGCTATTAAGGAATAAAGTGGCCAAACATGGGAATGGGCTAAGCTTTTAGAAGGATAGAGAATTTAATTCTAAGGCACCATATACGAAGTTTGCCAAACATAAGACAATACTAGTGTGTGGGTTTGAAGAACTTTTAATGACTTCCAAATTTGAGACACAAGTTTTTGTCTCTAAAATAACAAAAACAGCCGCCATTTTGTCCCCTCAAAACTTAGAGTCGAGATACGAGATACGGGTTTTTGCTCATTTCGAGTCGAGAATGATTCGAGTGATGTAGAGGTGTGCTAGGGTTAGGTTTGATTGGTTCGGAAAATCTTTTGGACCAACCCAAATTTCGAGTTGGTTAAGTTAGTGAATCGAGTAACCCGAATAAAGTTCACAACTTAATCCAACCCAACCATTTTAATGTCGAGTTCACAACCTAAACAATGATTATAGCATTAACTAAAAATCTCATGACAATGAATTAAAGTTTAATAAAGAAAAAGAGAAGGAAAATGGGAGCCATAAATTTAGTGACGTAAGGCTCTACCAAAAAATTAAATGACTTTCCCATTCGATCAACTGTCAAAAAAAGCAGTTTAAGTACCACAAACGACGACGTCTTGAAATAGTAGGCCAACACGTAGTAACATACAGGTATTTTAGTGTGATTTTCAAGCTTAGCGTCTTAGTAAGAAAATAATAATTAATTAAATGAAAAAAATGTAGAAAAAGTTTCCTTGTAGTCTCTTCATTATTAGATCGGTTCGGCCATAAAAAGTGCATATCCAATCTCGGTTCAAGTCCAAGTCGAACGGGTTTACAGTACTATATTGTAGAGATGTTTAAATGACTCGATAATTTGTACTATCCCTCCAAATAGTAAAAATTGGGTTAGATTAAATTTTGATCCCGAAATCAATTGGGTGTGTACTTTATTCGACTTGACTAATCTGAAATTTTGAACTCCTAAATTTCTTTATCTTGATTCGACCCGTGTACACCACTAACTATTTAGGTTGAATAGAGCTAATCCAACTTTAACAAGATTTTGACCCAATCCTTAGACGAACGTGATTTTTAAAATGGTGATCTATATCCAATCTAATGAATAAATGAAATGGACCATTCGAGTTTGGACTAAGCGTGTGCCGACCTTTAAACTTCGAGGTCGATGATGAAGCTGACAAAGGGAATCCAATGACTTTGTCTCTATTTTCTCCCCCAAAATCTCTTTAAAATCTCATTTTCTCACGAAATTTTGCTCTCTCTCTCTCCATTTTACATGGATTATTTTAGTCCATTATTATATATTTCTTTTTACATATATTAGTTTTTTCCATTATTGTACATTTTAATTACTAATTATGGTGTTTAATTTAGCCTTAATGTTCAAACATTCTTTTTTTAATTCTTAATTTATAATATTTTTTAATTGATAACTTAGAGTAGAAAACAAAATTATAATTTTTCCTTTTTAATATTCCTATTCCTATTTTTTTGTCGGCTTAATATGCCATCAATTCACTAAGTATTATATTAAAAATATTTATTATCAACCCATTTTAATAATATTGAATATAAAATATTAAATATAAAGGTTAAATATATATTTAATATTTTTACCAATATTTTAGTATAATAATATGATGAGATGAGAGTTTAATACCCAAACTATATTTAAATTGATGTTATTTTATATTATATAATATAGATAATTTTTTATTATAATAATAAGTGGGAATATGAATATTTAAATTTTTAACCAATTATTATCTATTATTTAATAACATAAAAACTCTGTAACTATTTAAAATGTGATAATACTTCGGGCAAAGATGCAAATAAAAAAATCGAGAGAAATTAGAAAAGAAAAAATTATTTTAAAAAACTATTTAGTCGTGAATATATCGCGATATTTTCAAGGGAAAATGCAGAGGAAAATGACGAGATAAAGAGAAATTGAAAGTACGGTGGACCTGGGGGCTGGAATCCTCCAACCCTACCTTTTCTTCTTCAACCAGGGGCTCTATCTTTTAACATTACATATACCTTTCTCCCTCTTACCCTGAATCTCTTCGCTCTCTCTCTCCTCTTCTTTCTCTCTCTAAACTCAACAACGAAGCTCCCCCAGCTCTCTGCTTCTTCTTCTTCCTCCATTTTCCCTTCTTGGGCTCTGCAACTTTCTTCTTCAATCCCTTCTGTGTTGGGGCCATTTCCTTCGGTTTGTGTCTGGTTCGCTAACTTCATGA

mRNA sequence

ATGGCAAAATTTGAAGATCATTATTTCTCGACATCCTTAACTACTTCAACCAAGTCTCAAGCTTGCTTCTTCCTCTTCCTCCTCGTTCTTCTCCTCCTCGTCGTTCCTTATCGATTCTCAACTGGGCCGAGCTCCATGGCTTCAACTAGTAATCCATCCCGTCCTCCTTCGTCTAAGGCCATGGCAGAACAAGCCTTCTCTAGACCTCAGTTTGAAGCATCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAACTCCCCCAGCTCTCTGCTTCTTCTTCTTCCTCCATTTTCCCTTCTTGGGCTCTGCAACTTTCTTCTTCAATCCCTTCTGTGTTGGGGCCATTTCCTTCGGTTTGTGTCTGGTTCGCTAACTTCATGA

Coding sequence (CDS)

ATGGCAAAATTTGAAGATCATTATTTCTCGACATCCTTAACTACTTCAACCAAGTCTCAAGCTTGCTTCTTCCTCTTCCTCCTCGTTCTTCTCCTCCTCGTCGTTCCTTATCGATTCTCAACTGGGCCGAGCTCCATGGCTTCAACTAGTAATCCATCCCGTCCTCCTTCGTCTAAGGCCATGGCAGAACAAGCCTTCTCTAGACCTCAGTTTGAAGCATCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAACTCCCCCAGCTCTCTGCTTCTTCTTCTTCCTCCATTTTCCCTTCTTGGGCTCTGCAACTTTCTTCTTCAATCCCTTCTGTGTTGGGGCCATTTCCTTCGGTTTGTGTCTGGTTCGCTAACTTCATGA

Protein sequence

MAKFEDHYFSTSLTTSTKSQACFFLFLLVLLLLVVPYRFSTGPSSMASTSNPSRPPSSKAMAEQAFSRPQFEASMHEVPSGPNPTSNNSPSSLLLLLPPFSLLGLCNFLLQSLLCWGHFLRFVSGSLTS
Homology
[Close]
BLAST of CmaCh17G001090 vs. TrEMBL
Match: A0A0A0LNB8_CUCSA (CLAVATA3/ESR-related protein OS=Cucumis sativus GN=Csa_2G131680 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 45/70 (64.29%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 18 KSQACFFLFLLVLLLLVVPYRFSTGPSSMASTSNPSRPPSSKAMAEQAFSRPQFEASMHE 77
          KSQACFFLFLLVLLLLVVP+R ST P++      PSRPPS+            FEA+MHE
Sbjct: 10 KSQACFFLFLLVLLLLVVPHRCSTVPNT------PSRPPSN--------FMAMFEAAMHE 65

Query: 78 VPSGPNPTSN 88
          VPSGPNPTSN
Sbjct: 70 VPSGPNPTSN 65

[Close]
BLAST of CmaCh17G001090 vs. NCBI nr
Match: gi|700206342|gb|KGN61461.1| (CLAVATA3/ESR-related protein [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-10
Identity = 45/70 (64.29%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 18 KSQACFFLFLLVLLLLVVPYRFSTGPSSMASTSNPSRPPSSKAMAEQAFSRPQFEASMHE 77
          KSQACFFLFLLVLLLLVVP+R ST P++      PSRPPS+            FEA+MHE
Sbjct: 10 KSQACFFLFLLVLLLLVVPHRCSTVPNT------PSRPPSN--------FMAMFEAAMHE 65

Query: 78 VPSGPNPTSN 88
          VPSGPNPTSN
Sbjct: 70 VPSGPNPTSN 65

The following BLAST results are available for this feature:
BLAST of CmaCh17G001090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G001090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNB8_CUCSA2.0e-1064.29CLAVATA3/ESR-related protein OS=Cucumis sativus GN=Csa_2G131680 PE=4 SV=1[more]
BLAST of CmaCh17G001090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G001090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206342|gb|KGN61461.1|2.9e-1064.29CLAVATA3/ESR-related protein [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G001090.1CmaCh17G001090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G001090CmoCh17G001140Cucurbita moschata (Rifu)cmacmoB353
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G001090Watermelon (97103) v2cmawmbB366
CmaCh17G001090Watermelon (97103) v2cmawmbB377
CmaCh17G001090Wax gourdcmawgoB0455
CmaCh17G001090Cucurbita maxima (Rimu)cmacmaB249
CmaCh17G001090Cucurbita maxima (Rimu)cmacmaB373
CmaCh17G001090Cucurbita maxima (Rimu)cmacmaB362
CmaCh17G001090Cucurbita maxima (Rimu)cmacmaB365
CmaCh17G001090Cucurbita maxima (Rimu)cmacmaB369
CmaCh17G001090Cucumber (Gy14) v1cgycmaB0715
CmaCh17G001090Cucurbita moschata (Rifu)cmacmoB350
CmaCh17G001090Cucurbita moschata (Rifu)cmacmoB359
CmaCh17G001090Cucurbita moschata (Rifu)cmacmoB362
CmaCh17G001090Cucurbita moschata (Rifu)cmacmoB365
CmaCh17G001090Wild cucumber (PI 183967)cmacpiB358
CmaCh17G001090Wild cucumber (PI 183967)cmacpiB360
CmaCh17G001090Cucumber (Chinese Long) v2cmacuB354
CmaCh17G001090Cucumber (Chinese Long) v2cmacuB356
CmaCh17G001090Melon (DHL92) v3.5.1cmameB338
CmaCh17G001090Melon (DHL92) v3.5.1cmameB343
CmaCh17G001090Watermelon (Charleston Gray)cmawcgB319
CmaCh17G001090Watermelon (Charleston Gray)cmawcgB328
CmaCh17G001090Watermelon (97103) v1cmawmB344
CmaCh17G001090Watermelon (97103) v1cmawmB358
CmaCh17G001090Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G001090Cucurbita pepo (Zucchini)cmacpeB388
CmaCh17G001090Cucurbita pepo (Zucchini)cmacpeB402
CmaCh17G001090Cucurbita pepo (Zucchini)cmacpeB407
CmaCh17G001090Cucurbita pepo (Zucchini)cmacpeB411
CmaCh17G001090Bottle gourd (USVL1VR-Ls)cmalsiB331
CmaCh17G001090Bottle gourd (USVL1VR-Ls)cmalsiB356
CmaCh17G001090Cucumber (Gy14) v2cgybcmaB197
CmaCh17G001090Cucumber (Gy14) v2cgybcmaB345
CmaCh17G001090Melon (DHL92) v3.6.1cmamedB394
CmaCh17G001090Melon (DHL92) v3.6.1cmamedB398
CmaCh17G001090Silver-seed gourdcarcmaB0314
CmaCh17G001090Silver-seed gourdcarcmaB1079
CmaCh17G001090Silver-seed gourdcarcmaB1321
CmaCh17G001090Silver-seed gourdcarcmaB1489
CmaCh17G001090Cucumber (Chinese Long) v3cmacucB0424
CmaCh17G001090Cucumber (Chinese Long) v3cmacucB0425
CmaCh17G001090Cucumber (Chinese Long) v3cmacucB0434