CmaCh17G000170 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATTTCTGCAGAAGCAAATCCGATGGCCACAGCGACAAACCGGAAGATAATTATGGTAACTTCGATAGCGATGAAGAAGAAAAGGGCTACTCTCCCACGCCGTTCTTGAAGGGGGGCAAGCATTTCGACATCCAAGCATACGCAAGCAACTACCACCGCAGTACCAAAATCCTCCGCCTCATATTCATCGCCGATCGCTTCGGCAACGCCAATGAAAGGCGGCGGAGTATGCAACTGGAGGCACTCCGAATCGCGTACGATATAGCCAAAAAGGGCAAGGACGTGAATGTGTTCATCAAAATCGTGCGAAAAATTGACGGGAGATTGGGCCCTAATTACGACATGGATGAAAATTGGTGCAACTCGGTGATTGAGGGGAGGCGTGTGATGAGCGAAATGCTACAGAGATGCGCGAAGAATTGTGAGGTATGAATTGAATCAGTAAATCAAATTCTGTAGTGATTATTGAATTATCTCGATATATATACACCTCATTGGTGGTTTTGTGATAGAAATCTTACACGGAAAGAACCATATGTGCGGAGGACGCAAGAAACGTGTTCAATTCGATAGCAGTTTTCTACGAGGACCACGGCGCTCTTACGAGGGCTTATGCGTTTTACAAGAAGAGCGTACATTTCTGCAGGAGCGATAAGAATTACTCAGAATTGCTAAGGCGTTTGATTGTGGTGGTGATTGAGTTGGGGCAGTTTGAAGCTTCTGCGGAGATTGCGGAAAAAGGAATGCAATATCCAAATCTTAATCCTATTACAATGGAGACTCTGCGCTGTGCTCTGGGATTGGCTCGCTTCAAGTCACATTGCTATAAAGACGCTGCTCATCAGGTTTGGCTTAGCCAATCCATCATCATTTCCATGTCAATAAATTCTTCCGTAACTCATATTCTTAGGAGTATACATGCAGCTCTTGGGAGTAAGTAAAGAATTGGGAAACCGATTTTCAAAAGTCATGGCTGCTCATGATATTGCTACCTTTGGCGCCCTATGTGCACTCGCAACTTTTGATCCAATAGAGTTCAAGGCACCAATTTTTCCATTTTTCTTTTCTAATTCTCCATTTACTTTGCACAGAATTTTATTTAGTCACTGGTTTTTTACATCCCCAGACTTCAGTTATGGATAATCAGAACTTTCATTTCTACTTGGATTCAGCTCTGGAAGTGAAGGAGCTCGTCAGGGATTTTTACTTGAGGTATCCTAGTGAACTTTGATTCATCTTTTCTCAACCAAACTTCACGTTCAGATTCTTAGTGTATGATGATCTATTGGCAGGCGTTATTGTTCGTGCTTCAGACACCTTGATAACTTGAGAGAATGGCTGTTGGCTGACATATATTTCTTCAATCACTACGAGACACTGTATAATAAAATCAGAAACAGAGCACTTATTGTCTACACCGAGCCCTTTGTGGCAGTTGGTTTGCAGAGAGTGGCTGTTGTTTTTGGTACAAACATTGAAGCTATTGAGAAGCAGCTCCTGGCTTTAATAAACACAAACCAAATTCAGGTCTTCGTAGCTCCCATTTTTCAAAGTTTGGTCATGTAATTCTTTACTAATAACCTCTCCTTTGTGTGTACTAGGCCGATGTTGACTCCATCAATAAAGTTGTACATTTCCCAAGACATGAAGGAAATGGAAGTTTCCCACAGGGTTTGCAGAGTAGTGTGGCTGAATTTGATCAGGTACATTCTGTTGTTAAACACATACTTTATTCGTAATGGAACTTGTATTATAGTATATCATAAACAAGAAACGCTATATGTTCTTTACTATACATCTGATGGGTAAGGCTGTTAATTCTTTTTCAACAAACGACTAAGACACAAACACAATATTGAAGGGTTGAGATAATAAGTATTCTACATTATCAAAAACAAGAGACTCATTGAGTACAAGTTGGGAGGTAGCGTTGTGGTTTAAGGTGGTAATAGGGTATGAAGGATGAAGGGAGAGGGGAATAGGGTAGGAGGAGGAGGAGGAGCAGCAGAGGGTGCGTGGATCCTCCATGTCTTTGGCCGCACCTATAAATGAGGCTGCCCTCCCTCCCTCCCTCCCAAACTCCATGCTGGCTGCTGGCTGGAATGTGTGGGGATCCACCTACACCCTACACCCCTACCGACCCCAAATTCATCCTCCACTGTTTTCTATTTATTTTCCGCTCATGTGGACCATTGCCATTCCATCTTCCCCCCCATTTAATTATAACTTCCTTACCCCATCCTTTAATAAATATTTTTCTTACTAATCATATATTTTTGTATTTGTATTTTGGGGGAATGATATGATATCCTCCATTTTATTTCACAAGAGCTGCCCGACTTATAGATTGAAAAGGGTTTTATGTCTTAATGAAAGTCATGCCATTGCCAACCCTCACCTCTCTTTTCTCCTCCTTCCTTCATTTTCAAGCTTTCTTAAAAGGCATGACATGAGATTAGTAGAAGAGTGTTTCCCTTTATCAATTGAGTTATGTTCATATTAACGTTTATTTTTTCTTTTTAGAAGAAATGATCGAGCCATAGTATTAGACAAAAACATGGGAATAAATGATCTCATTCACCATGTGCCTCTGTTTCACATTTCCATTTACATCTCTCTATAACCATTATTTTGTGTAAAAGAGAGAAGAATAATAATAGACCTTAAAAACTGTATATGCTTTGGATGTGCATTATTGAGTTTGTGATGAAGTTCCAATTTTTGACGCTACCTTCGCCCACTCAACTTCCTTCCTGCATCATGCATCATTCAAGGTGTGGGATACCCGACAATAACCATATATTTCATTTCTTCGTACATTTTATCTCATATTTAATAGATTTTAGACTAAATTGCTAGAATATTGATGTCTCGTTACCTTTGGTCATCTTGATCTATAAATATTTGTATTTTCGTGTGATAGTCATTAATTTATATAATCACTAACTAACTATATAAATTTTCAAGTCTTTGATTTAATTACATATTGATGGAACTATAATGGTAATAAACGTTACATTTTTTAGATTAAAAAAATTTGAAAGTGGGAGATTTTTTTTTTACTACGTTTGTAATTATTTTTAAGTTGCTATTTTTATGTAATATAATAATTCATTTACGTTATATTAGAAATTTGGTTTTAAAGCTTAAAACATACGAAACTAATAAAATACTTGGGCTTTAATTTTAGTTTAGTCAATATGGTTGAGACAATAAATATAATGAGAAGAATTTAAAGTAATAGTATGGGGTGGTAAATGATAGTAAAAAGATAAAAAGTTGAATTTAATTACCTCATAATGAGGTATATTAAAGCAGCACTTTCTTTTTTCTTAAAGTGGAAAAGATTATATTTAAATTAATTGCCCCAAATTAAACAAATATTTATAGTGCCATTTATTACTCACATTTAGCTTCATAACCATGTTATGTGCCTACTTTCACCTTTCTCTTTTTTTTTTGTTTTCTAATTTGTTCTTAAAATTAGCTTTCCAACTTATAATAATCCAAACTTCAAACCTACAACTAATAAATCTAGAGTTACTAAACCCAACCAGCCTTCGATACACTTGAGACATGACGAAACTACCCTTTGGAGTAGGATTGAGTATGCTTGCATTGCAAACCAAAAACACTAAATGAAAAAGAAAAAAAAAATGAAAGGGGAAAGGAAGAAGGGTGCAAAAAATTAATAGGAGAGAGAGAATGGGGAATTGGGGAAAGGCATGAATGAATGCATAAGGTTACCAAAGGCCCTATACTCTCTCTATGCATAGACTAAAGTGAGAAGCAAGCCAAAGAAAACAACATTTTGTATGACTCATAAAAGGCCACCATAACTCAACTCCTTCCCCCTTCTACCTAATTTTTGTGGTCCTGTCTCTAACACAAAGGGCTTAGGGTTCACCCAAGATTTGGTTTAACAAGTTCTTTAGCATTTATAAAAACTTTGTCAATTTGTTAAATAATGTCATTTTTGTGAAAAATATCCCATCATCCTATTACTCAATCTCTCTCTAATCATTCTCTGTCTTTCTTTTCTCTCGTGGTTTACAAATTAATTTTTTAAAATAATCATAACAAAAATCTAAAATATGATATTACACACTCACAAATTCATTAATAACTAATAATGGCATGTATGAAGCTTTGTAATATATTATCAAAACATTTTTAAAGAACAGGTTAAATTATAATAATTTTAAAAAATGAAATTGAGTATATATTGAATTCCAAAATTTGTGAAAGAGTTGCATAATTTAGGGAAGAGATTGGTACAAAAATTTGGAGTTTCCGAAGTCAGAGACCCATAGAAGGGAATAGGTTATTTATTTAAGCTTCTTCTTCTTCTTCCTCTTCTTCCTCTTCTTCCTCACCACTGTAACTGTAAGTGTATGATGCCATTTTCAGAGGGTTTGGGAACGGGCGATTGAGAGTCAACCGCACCCCCTTTTACCCTTTTGTTGTACCTTCGTATTTCTAAGGCTTCCAATACTCCACATATTGCGTTTTATCCTCTCTCTCCCCTTCTTCTCTCTGCACAAATCTTTAAAATAACAATACAAAACGTCCATTCTTCCATTTCTCTTTCTCTCTCTCTCTCTCCTCTTTTTTCTTTTTTCTTTTTTCGATTCTCCAAGTTTTCTGCTGCCTTGAAAGGGGTTCTTCTTCTTTTTTTTTTTAAAAACATGCAGCGAGGCTCAAGTAGCCCCCATTAACTAGGGTTCTTCAGCTTCTTCTTTTCTGGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAAAGTGAGGGAGGGAGGGAGGGAGGAAGAAATAGCACAAGGGGTTTTTCCATTTCACTCTCTCTCTCTTCTTCTTATTGCTTTTTGGTTTTGGGGGTTTTGTGGGTCTTGTGGGTCTGTTATTTCTTCTGGGTTTCTGTGGAACGCCTTCATTTCATTGATTTCTCTAGCAATGGGCTAAGTTCTTCGTTAATTTTGTAAGCACCCCAAAAACATTAGCGAGTGGAAGAAATAAATAA ATGCATTTCTGCAGAAGCAAATCCGATGGCCACAGCGACAAACCGGAAGATAATTATGGTAACTTCGATAGCGATGAAGAAGAAAAGGGCTACTCTCCCACGCCGTTCTTGAAGGGGGGCAAGCATTTCGACATCCAAGCATACGCAAGCAACTACCACCGCAGTACCAAAATCCTCCGCCTCATATTCATCGCCGATCGCTTCGGCAACGCCAATGAAAGGCGGCGGAGTATGCAACTGGAGGCACTCCGAATCGCGTACGATATAGCCAAAAAGGGCAAGGACGTGAATGTGTTCATCAAAATCGTGCGAAAAATTGACGGGAGATTGGGCCCTAATTACGACATGGATGAAAATTGGTGCAACTCGGTGATTGAGGGGAGGCGTGTGATGAGCGAAATGCTACAGAGATGCGCGAAGAATTGTGAGAAATCTTACACGGAAAGAACCATATGTGCGGAGGACGCAAGAAACGTGTTCAATTCGATAGCAGTTTTCTACGAGGACCACGGCGCTCTTACGAGGGCTTATGCGTTTTACAAGAAGAGCGTACATTTCTGCAGGAGCGATAAGAATTACTCAGAATTGCTAAGGCGTTTGATTGTGGTGGTGATTGAGTTGGGGCAGTTTGAAGCTTCTGCGGAGATTGCGGAAAAAGGAATGCAATATCCAAATCTTAATCCTATTACAATGGAGACTCTGCGCTGTGCTCTGGGATTGGCTCGCTTCAAGTCACATTGCTATAAAGACGCTGCTCATCAGACTTCAGTTATGGATAATCAGAACTTTCATTTCTACTTGGATTCAGCTCTGGAAGTGAAGGAGCTCGTCAGGGATTTTTACTTGAGGCGTTATTGTTCGTGCTTCAGACACCTTGATAACTTGAGAGAATGGCTGTTGGCTGACATATATTTCTTCAATCACTACGAGACACTGTATAATAAAATCAGAAACAGAGCACTTATTGTCTACACCGAGCCCTTTGTGGCAGTTGGTTTGCAGAGAGTGGCTGTTGTTTTTGGTACAAACATTGAAGCTATTGAGAAGCAGCTCCTGGCTTTAATAAACACAAACCAAATTCAGGCCGATGTTGACTCCATCAATAAAGTTGTACATTTCCCAAGACATGAAGGAAATGGAAGTTTCCCACAGGGTTTGCAGAGTAGTGTGGCTGAATTTGATCAGCAATGGGCTAAGTTCTTCGTTAATTTTGTAAGCACCCCAAAAACATTAGCGAGTGGAAGAAATAAATAA ATGCATTTCTGCAGAAGCAAATCCGATGGCCACAGCGACAAACCGGAAGATAATTATGGTAACTTCGATAGCGATGAAGAAGAAAAGGGCTACTCTCCCACGCCGTTCTTGAAGGGGGGCAAGCATTTCGACATCCAAGCATACGCAAGCAACTACCACCGCAGTACCAAAATCCTCCGCCTCATATTCATCGCCGATCGCTTCGGCAACGCCAATGAAAGGCGGCGGAGTATGCAACTGGAGGCACTCCGAATCGCGTACGATATAGCCAAAAAGGGCAAGGACGTGAATGTGTTCATCAAAATCGTGCGAAAAATTGACGGGAGATTGGGCCCTAATTACGACATGGATGAAAATTGGTGCAACTCGGTGATTGAGGGGAGGCGTGTGATGAGCGAAATGCTACAGAGATGCGCGAAGAATTGTGAGAAATCTTACACGGAAAGAACCATATGTGCGGAGGACGCAAGAAACGTGTTCAATTCGATAGCAGTTTTCTACGAGGACCACGGCGCTCTTACGAGGGCTTATGCGTTTTACAAGAAGAGCGTACATTTCTGCAGGAGCGATAAGAATTACTCAGAATTGCTAAGGCGTTTGATTGTGGTGGTGATTGAGTTGGGGCAGTTTGAAGCTTCTGCGGAGATTGCGGAAAAAGGAATGCAATATCCAAATCTTAATCCTATTACAATGGAGACTCTGCGCTGTGCTCTGGGATTGGCTCGCTTCAAGTCACATTGCTATAAAGACGCTGCTCATCAGACTTCAGTTATGGATAATCAGAACTTTCATTTCTACTTGGATTCAGCTCTGGAAGTGAAGGAGCTCGTCAGGGATTTTTACTTGAGGCGTTATTGTTCGTGCTTCAGACACCTTGATAACTTGAGAGAATGGCTGTTGGCTGACATATATTTCTTCAATCACTACGAGACACTGTATAATAAAATCAGAAACAGAGCACTTATTGTCTACACCGAGCCCTTTGTGGCAGTTGGTTTGCAGAGAGTGGCTGTTGTTTTTGGTACAAACATTGAAGCTATTGAGAAGCAGCTCCTGGCTTTAATAAACACAAACCAAATTCAGGCCGATGTTGACTCCATCAATAAAGTTGTACATTTCCCAAGACATGAAGGAAATGGAAGTTTCCCACAGGGTTTGCAGAGTAGTGTGGCTGAATTTGATCAGCAATGGGCTAAGTTCTTCGTTAATTTTGTAAGCACCCCAAAAACATTAGCGAGTGGAAGAAATAAATAA MHFCRSKSDGHSDKPEDNYGNFDSDEEEKGYSPTPFLKGGKHFDIQAYASNYHRSTKILRLIFIADRFGNANERRRSMQLEALRIAYDIAKKGKDVNVFIKIVRKIDGRLGPNYDMDENWCNSVIEGRRVMSEMLQRCAKNCEKSYTERTICAEDARNVFNSIAVFYEDHGALTRAYAFYKKSVHFCRSDKNYSELLRRLIVVVIELGQFEASAEIAEKGMQYPNLNPITMETLRCALGLARFKSHCYKDAAHQTSVMDNQNFHFYLDSALEVKELVRDFYLRRYCSCFRHLDNLREWLLADIYFFNHYETLYNKIRNRALIVYTEPFVAVGLQRVAVVFGTNIEAIEKQLLALINTNQIQADVDSINKVVHFPRHEGNGSFPQGLQSSVAEFDQQWAKFFVNFVSTPKTLASGRNK
BLAST of CmaCh17G000170 vs. Swiss-Prot
Match: CSN1_XENLA (COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 3.4e-28 Identity = 102/413 (24.70%), Postives = 183/413 (44.31%), Query Frame = 1
BLAST of CmaCh17G000170 vs. Swiss-Prot
Match: CSN1_MOUSE (COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 3.2e-26 Identity = 99/412 (24.03%), Postives = 179/412 (43.45%), Query Frame = 1
BLAST of CmaCh17G000170 vs. Swiss-Prot
Match: CSN1_ARATH (COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1 PE=1 SV=2) HSP 1 Score: 120.2 bits (300), Expect = 5.5e-26 Identity = 79/216 (36.57%), Postives = 112/216 (51.85%), Query Frame = 1
BLAST of CmaCh17G000170 vs. Swiss-Prot
Match: CSN1_RAT (COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1 PE=1 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 7.2e-26 Identity = 98/412 (23.79%), Postives = 179/412 (43.45%), Query Frame = 1
BLAST of CmaCh17G000170 vs. Swiss-Prot
Match: CSN1_HUMAN (COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1 SV=4) HSP 1 Score: 110.9 bits (276), Expect = 3.3e-23 Identity = 96/409 (23.47%), Postives = 168/409 (41.08%), Query Frame = 1
BLAST of CmaCh17G000170 vs. TrEMBL
Match: A0A0B2R546_GLYSO (COP9 signalosome complex subunit 1 OS=Glycine soja GN=glysoja_034637 PE=4 SV=1) HSP 1 Score: 262.7 bits (670), Expect = 7.6e-67 Identity = 154/383 (40.21%), Postives = 223/383 (58.22%), Query Frame = 1
BLAST of CmaCh17G000170 vs. TrEMBL
Match: A0A0B0MIS6_GOSAR (COP9 signalosome complex subunit 1-like protein OS=Gossypium arboreum GN=F383_25151 PE=4 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 1.3e-61 Identity = 159/420 (37.86%), Postives = 227/420 (54.05%), Query Frame = 1
BLAST of CmaCh17G000170 vs. TrEMBL
Match: A0A0B0NYC0_GOSAR (COP9 signalosome complex subunit 1-like protein OS=Gossypium arboreum GN=F383_22356 PE=4 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59 Identity = 147/380 (38.68%), Postives = 214/380 (56.32%), Query Frame = 1
BLAST of CmaCh17G000170 vs. TrEMBL
Match: A0A0C9S8Z7_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_2421_1638 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 4.5e-59 Identity = 148/406 (36.45%), Postives = 221/406 (54.43%), Query Frame = 1
BLAST of CmaCh17G000170 vs. TrEMBL
Match: S8DVW8_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_10712 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 8.5e-58 Identity = 154/430 (35.81%), Postives = 223/430 (51.86%), Query Frame = 1
BLAST of CmaCh17G000170 vs. TAIR10
Match: AT3G61140.1 (AT3G61140.1 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain) HSP 1 Score: 120.2 bits (300), Expect = 3.1e-27 Identity = 79/216 (36.57%), Postives = 112/216 (51.85%), Query Frame = 1
BLAST of CmaCh17G000170 vs. TAIR10
Match: AT3G12850.1 (AT3G12850.1 COP9 signalosome complex-related / CSN complex-related) HSP 1 Score: 59.7 bits (143), Expect = 5.0e-09 Identity = 64/299 (21.40%), Postives = 115/299 (38.46%), Query Frame = 1
BLAST of CmaCh17G000170 vs. NCBI nr
Match: gi|734391644|gb|KHN27284.1| (COP9 signalosome complex subunit 1 [Glycine soja]) HSP 1 Score: 262.7 bits (670), Expect = 1.1e-66 Identity = 154/383 (40.21%), Postives = 223/383 (58.22%), Query Frame = 1
BLAST of CmaCh17G000170 vs. NCBI nr
Match: gi|728816175|gb|KHG02078.1| (COP9 signalosome complex subunit 1 -like protein [Gossypium arboreum]) HSP 1 Score: 245.4 bits (625), Expect = 1.8e-61 Identity = 159/420 (37.86%), Postives = 227/420 (54.05%), Query Frame = 1
BLAST of CmaCh17G000170 vs. NCBI nr
Match: gi|728837396|gb|KHG16839.1| (COP9 signalosome complex subunit 1 -like protein [Gossypium arboreum]) HSP 1 Score: 238.8 bits (608), Expect = 1.7e-59 Identity = 147/380 (38.68%), Postives = 214/380 (56.32%), Query Frame = 1
BLAST of CmaCh17G000170 vs. NCBI nr
Match: gi|527194448|gb|EPS64067.1| (hypothetical protein M569_10712, partial [Genlisea aurea]) HSP 1 Score: 232.6 bits (592), Expect = 1.2e-57 Identity = 154/430 (35.81%), Postives = 223/430 (51.86%), Query Frame = 1
BLAST of CmaCh17G000170 vs. NCBI nr
Match: gi|828299192|ref|XP_012569149.1| (PREDICTED: COP9 signalosome complex subunit 1-like [Cicer arietinum]) HSP 1 Score: 227.3 bits (578), Expect = 5.1e-56 Identity = 148/415 (35.66%), Postives = 212/415 (51.08%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |