CmaCh16G011640 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G011640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Glycine-rich protein-1
Location	Cma_Chr16 : 8923079 .. 8923846 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATCACTAGAGCGTTCTGCCTTAGCTTTCTTCTCCTTGTAGGGTTGGGTTTAACTTCCGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACAATCGCCCTAACCCTAGAGAAGGGTATGATTCGGGGCATCGTGACGAATCCTATGATAATGTATATGGAGGAAGATCGGGTGGAGAATATGGAGTCGGAGGGTCGGCTCTGGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCGGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGGTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGACGGTGGGTATGGAAGGGGAGACGGAGTAGGAGGCCATGCAGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGTTCTGGAATTGGGGCCGGCGGTGCTTACGGCAGTGGAGGAGGTCATGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCACAAACTCCATCTCAAACAAGAATTGA

mRNA sequence

ATGGCTATCACTAGAGCGTTCTGCCTTAGCTTTCTTCTCCTTGTAGGGTTGGGTTTAACTTCCGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACAATCGCCCTAACCCTAGAGAAGGGTATGATTCGGGGCATCGTGACGAATCCTATGATAATGTATATGGAGGAAGATCGGGTGGAGAATATGGAGTCGGAGGGTCGGCTCTGGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCGGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGGTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGACGGTGGGTATGGAAGGGGAGACGGAGTAGGAGGCCATGCAGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGTTCTGGAATTGGGGCCGGCGGTGCTTACGGCAGTGGAGGAGGTCATGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCACAAACTCCATCTCAAACAAGAATTGA

Coding sequence (CDS)

ATGGCTATCACTAGAGCGTTCTGCCTTAGCTTTCTTCTCCTTGTAGGGTTGGGTTTAACTTCCGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACAATCGCCCTAACCCTAGAGAAGGGTATGATTCGGGGCATCGTGACGAATCCTATGATAATGTATATGGAGGAAGATCGGGTGGAGAATATGGAGTCGGAGGGTCGGCTCTGGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCGGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGGTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGACGGTGGGTATGGAAGGGGAGACGGAGTAGGAGGCCATGCAGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGTTCTGGAATTGGGGCCGGCGGTGCTTACGGCAGTGGAGGAGGTCATGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCACAAACTCCATCTCAAACAAGAATTGA

Protein sequence

MAITRAFCLSFLLLVGLGLTSAARTLLDYDPRTRHYGYNRPNPREGYDSGHRDESYDNVYGGRSGGEYGVGGSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYGGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGGYDGGYALTNSISNKN

Homology

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BLAST of CmaCh16G011640 vs. Swiss-Prot
Match: GRP2_PHAVU (Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.9e-09
Identity = 105/227 (46.26%), Postives = 115/227 (50.66%), Query Frame = 1


Query: 47  YDSGHRDESYDNVYGGRSGGEYGVGGS------------ALGGSGYGSGGVRGSGYGNGG 106
           Y  G     Y    GG +GG YG GG             A GG GY +GG +G GYG GG
Sbjct: 110 YGGGGERGGYGGGQGGGAGGGYGAGGEHGIGYGGGGGSGAGGGGGYNAGGAQGGGYGTGG 169

Query: 107 GNAYGGGVSSGVGG-------AGYGSGSRYGGGEDHGVGYGGGRSGGYENGGNGGYGQGR 166
           G   GGG     GG       AG G+G  YGGG +HG G GGG+ G    G  GGYG G 
Sbjct: 170 GAGGGGGGGGDHGGGYGGGQGAGGGAGGGYGGGGEHGGGGGGGQGG----GAGGGYGAGG 229

Query: 167 DHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGVGG-HAGGSGIGAGGGYGG 226
           +H  G G   G G G G G G  HG G GGG  GG G G G GG H GG+G G GGG GG
Sbjct: 230 EHGGGAGGGQGGGAGGGYGAGGEHGGGAGGGQGGGAGGGYGAGGEHGGGAGGGQGGGAGG 289

Query: 227 -------HAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGGYDGGYA 247
                  H GG+G G GG  G G G GGEH    G G+ GG  GGYA
Sbjct: 290 GYGAGGEHGGGAGGGQGGGAGGGYGAGGEHGGGGGGGQGGGAGGGYA 332

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BLAST of CmaCh16G011640 vs. TrEMBL
Match: A0A0A0L1V3_CUCSA (Glycine-rich protein-1 OS=Cucumis sativus GN=Csa_3G011070 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.6e-29
Identity = 136/255 (53.33%), Postives = 149/255 (58.43%), Query Frame = 1


Query: 1   MAITRAFCLSFLLLVGLGLTSAARTLLDYDPRTRHYGYNRPNPREGYDSGHRDESYDNVY 60
           MAI RA CL+FLL V LGL SA RTLLDYDPRT  YGY+RP+PR GYD GH DESYD  Y
Sbjct: 1   MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60

Query: 61  GGRSGGEYGVGGSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG S   +G+G SALGGSGY  GG    GYG+   +        GVG   YG G  YGG 
Sbjct: 61  GGSSSRGHGIGDSALGGSGYEGGGRHDYGYGDRHND-------RGVGYGNYGGG--YGGV 120

Query: 121 EDHGVGYGGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
             HG GYG        N G G YG      +G       G G+GNGY D H  GNG   D
Sbjct: 121 GGHGDGYG--------NNGGGSYGDRYGPSLGGSGYGSGGKGSGNGY-DDHSRGNGAR-D 180

Query: 181 GGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGG 240
             YG   G GG    SG G+GG           G  G YG+GG HGGE+DNSKGSGEEGG
Sbjct: 181 NSYGDSHGHGGR--DSGYGSGG-----------GVTGGYGNGGVHGGEYDNSKGSGEEGG 223

Query: 241 YDGGYALTNSISNKN 256
           YDGGYA+ NSIS  N
Sbjct: 241 YDGGYAVKNSISKGN 223

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BLAST of CmaCh16G011640 vs. TrEMBL
Match: A0A0A0L1U7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009540 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-21
Identity = 141/279 (50.54%), Postives = 160/279 (57.35%), Query Frame = 1


Query: 1   MAITRAFCLSFLLLVGLGLTSAARTLLDYD---PRTRHYGYNRP--NPREGYDSGHRDES 60
           MAI++     FLLLV LGL SAAR+LL YD    R+ +  Y+ P  NP+ GY+   RD  
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDGY 60

Query: 61  Y------DNVYGGRSGGEYGVG---GSALGGSGYGSGGVRGSGYG----------NGGGN 120
           Y      D  YGG +GG YG G   GS+LGGSGYGSGG  GSGYG          +GGG 
Sbjct: 61  YHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGGSGYGGVGNHEVGYGSGGGG 120

Query: 121 AYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYGGGRSGGYENGGNG--GYGQGRDHDIGYG 180
            YG GV S +GG+GYGSG   GGG   G G  GGR  GY +GG G  GYG   DH +GYG
Sbjct: 121 GYGAGVGSDLGGSGYGSGG--GGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGYG 180

Query: 181 SRNGNGNGNGNG-------YGDSHGYGNGGGVDGGYGRGDGVGGHAGGSGIGAGGGYGGH 240
           S  G G G+G G       +G  +G G GGG   GYG   G  G+ GGSG G G GYGG 
Sbjct: 181 SGGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYG---GSKGYGGGSGGGGGAGYGGG 240

Query: 241 AGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGGYDGGYA 247
           A GSG      YGSGGG         GSGEEGGYDGGYA
Sbjct: 241 AHGSG------YGSGGG--------AGSGEEGGYDGGYA 260

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BLAST of CmaCh16G011640 vs. TrEMBL
Match: Q9ZWM2_CUCSA (Glycine-rich protein-2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 141/279 (50.54%), Postives = 160/279 (57.35%), Query Frame = 1


Query: 1   MAITRAFCLSFLLLVGLGLTSAARTLLDYD---PRTRHYGYNRP--NPREGYDSGHRDES 60
           MAI++     FLLLV LGL SAAR+LL YD    R+ +  Y+ P  NP+ GY+   RD  
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDGY 60

Query: 61  Y------DNVYGGRSGGEYGVG---GSALGGSGYGSGGVRGSGYG----------NGGGN 120
           Y      D  YGG +GG YG G   GS+LGGSGYGSGG  GSGYG          +GGG 
Sbjct: 61  YHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGGSGYGGVGNHEVGYGSGGGG 120

Query: 121 AYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYGGGRSGGYENGGNG--GYGQGRDHDIGYG 180
            YG GV S +GG+GYGSG   GGG   G G  GGR  GY +GG G  GYG   DH +GYG
Sbjct: 121 GYGAGVGSDLGGSGYGSGG--GGGTGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGYG 180

Query: 181 SRNGNGNGNGNG-------YGDSHGYGNGGGVDGGYGRGDGVGGHAGGSGIGAGGGYGGH 240
           S  G G G+G G       +G  +G G GGG   GYG   G  G+ GGSG G G GYGG 
Sbjct: 181 SGGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYG---GSKGYGGGSGGGGGAGYGGG 240

Query: 241 AGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGGYDGGYA 247
           A GSG      YGSGGG         GSGEEGGYDGGYA
Sbjct: 241 AHGSG------YGSGGG--------AGSGEEGGYDGGYA 260

[Close]

BLAST of CmaCh16G011640 vs. TrEMBL
Match: A0A0A0L190_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010050 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-17
Identity = 55/85 (64.71%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 1  MAITRAFCLSFLLLVGLGLTSAARTLLDYDPRTRHYGYNRPNPREGYDSGHRDESYDNVY 60
          MAI+R  C+ FLL VGLGL SA RTLLDYDPR R Y Y+RP PR GYD  HRD+SYDNVY
Sbjct: 1  MAISRVLCIGFLLFVGLGLASATRTLLDYDPRARRYDYDRPTPRVGYDPSHRDQSYDNVY 60

Query: 61 GGRSGGEYGVGGSALGGSGYGSGGV 86
          GG S   YG G SALG       GV
Sbjct: 61 GGSSSRGYGAGDSALGAKEVEKKGV 85

[Close]

BLAST of CmaCh16G011640 vs. TrEMBL
Match: A0A0A0L3Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009550 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-14
Identity = 126/272 (46.32%), Postives = 141/272 (51.84%), Query Frame = 1


Query: 1   MAITRAFCLSFLLLVGLGLTSAARTLLDYDPRTRHYGYNRPNPREGYDSGHRDESYDNVY 60
           MAI R F   FLLLV LGL SA R+LL YDP   H  Y+  N + GY   H D+ Y    
Sbjct: 10  MAIFRTFSFGFLLLVSLGLASATRSLLTYDP-PHHSVYDDHNTKVGYGRDHHDQPYGGGV 69

Query: 61  GGRSGGEYGVG-GSALGGSGY------GSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGS 120
           G   G  YG G GS  GG GY      G        YG   G  YG G  S +GG+GYG+
Sbjct: 70  GASGG--YGAGAGSGYGGVGYEHDHHDGYERDHDRSYGGSAGGGYGVGAGSSLGGSGYGN 129

Query: 121 GSRYGGGEDHGVGYGGGRSGGYENGGNGGYGQGRDHDI---GYGSRNGNGNGNGNG--YG 180
                   DHGV        GY NGG+GGYG G   D+   GYGS NG  +G+GNG   G
Sbjct: 130 -------VDHGV--------GYSNGGSGGYGAGVGSDLGGSGYGSGNGGASGSGNGDLGG 189

Query: 181 DSHGYGNGGGVDGGY-GRGD-------------GVGGHAGGSGIGAGGGYGGHAGGSGIG 240
              GYG GG    GY GRGD             G  G+ GGSG+G G GY G A GSG G
Sbjct: 190 RGKGYGRGGVGGNGYGGRGDHGRVVGHDDVVYGGSKGYGGGSGVGGGAGYSGGASGSGYG 249

Query: 241 AGGAYGSGGGHGGEHDNSKGSGEEGGYDGGYA 247
           +GG  GSG G+G       GSGEEGGYDGGYA
Sbjct: 250 SGGGAGSGSGYG-------GSGEEGGYDGGYA 256

[Close]

BLAST of CmaCh16G011640 vs. TAIR10
Match: AT2G36120.1 (AT2G36120.1 Glycine-rich protein family)

HSP 1 Score: 52.0 bits (123), Expect = 6.3e-07
Identity = 110/250 (44.00%), Postives = 121/250 (48.40%), Query Frame = 1


Query: 14  LVGLGLTSAARTLL---DYDPRTRHYGYN-------------RPNPREGYDSGHRDESYD 73
           L+GLGL SA R LL   + +     YG N              P    GY  G  +    
Sbjct: 13  LIGLGLCSARRALLSSSESEAEVAAYGVNSGLSAGLGVGIGGGPGGGSGYGGGSGEGGGA 72

Query: 74  NVYGGR---SGGEYGVGGSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGS- 133
             +G      GG  G GG A GG G G GG  G G G GGG  YGGG + G GG G G  
Sbjct: 73  GGHGEGHIGGGGGGGHGGGAGGGGGGGPGGGYGGGSGEGGGAGYGGGEAGGHGGGGGGGA 132

Query: 134 -GSRYGGGEDHGVGYGGGRS----GGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYG 193
            G   GGG  HG GYGGG+     GGY  GG GG+G G       G  NG G G G+G G
Sbjct: 133 GGGGGGGGGAHGGGYGGGQGAGAGGGYGGGGAGGHGGGG------GGGNGGGGGGGSGEG 192

Query: 194 DSHG--YGNGGGVDGGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHG 237
            +HG  YG GGG   GYG G G GGH GG     GGG GG  GG G G G A  SG GHG
Sbjct: 193 GAHGGGYGAGGGAGEGYGGGAGAGGHGGG-----GGGGGGSGGGGGGGGGYAAASGYGHG 251

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BLAST of CmaCh16G011640 vs. NCBI nr
Match: gi|659096568|ref|XP_008449165.1| (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36
Identity = 142/255 (55.69%), Postives = 156/255 (61.18%), Query Frame = 1


Query: 1   MAITRAFCLSFLLLVGLGLTSAARTLLDYDPRTRHYGYNRPNPREGYDSGHRDESYDNVY 60
           MAI RA CL+FLL VGLGL SA RTLLDYDPRTRHYGY+RP+PR GYD GHRDESYDN Y
Sbjct: 1   MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 61  GGRSGGEYGVGGSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG S   +G+G SALGGSGY  GG R  GYG+   N           G GYG+G  YGG 
Sbjct: 61  GGSSSRGHGIGDSALGGSGYEGGGRRDYGYGDRNDNR----------GVGYGNGGGYGGV 120

Query: 121 EDHGVGYGGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
             HG GYG        N G GGYG      +G       G G+ NGY D H +G GG  D
Sbjct: 121 GGHGDGYG--------NNGGGGYGDRYGPSLGGSGYGSGGKGSDNGYDDRHSHGYGGR-D 180

Query: 181 GGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGG 240
            GY  GD  G     SG G+GG           G  G YG+GG HGGE+DNSKGSGEEGG
Sbjct: 181 NGY--GDSHGHEGRDSGYGSGG-----------GVSGGYGNGGVHGGEYDNSKGSGEEGG 223

Query: 241 YDGGYALTNSISNKN 256
           YDGGYA+ NSIS  N
Sbjct: 241 YDGGYAVKNSISKGN 223

[Close]

BLAST of CmaCh16G011640 vs. NCBI nr
Match: gi|659095616|ref|XP_008448676.1| (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 3.5e-31
Identity = 156/271 (57.56%), Postives = 175/271 (64.58%), Query Frame = 1


Query: 1   MAITRAFCLSFLLLVGLGLTSAARTLLDYDPRTRHYGYNRPNPREGYDSGHRDESYDNVY 60
           MA+ R   LSFLLLVGLGL SAARTLLDYDPRTR+YGY+RP PR GYD  HRDESYDNVY
Sbjct: 1   MAVHRGLYLSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNVY 60

Query: 61  GGRSGGEYGVGGSALGGSGYGSG-----GVR----GSGYGNGGGNAYGGGVSSGVGGAGY 120
           GG S   +G+G SALGGS +  G     G R    G GYGNGGG  YG      VGG G 
Sbjct: 61  GGSSSKGHGIGDSALGGSEHEGGRHYQYGGRNDDHGVGYGNGGG--YGS-----VGGHGD 120

Query: 121 GSGSRYGGGEDHGVGYGGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNG---NGNGYG 180
           G G+  GGG  HG GYG    GGY + G  G G G +   GYGS  G+G+G   NG GYG
Sbjct: 121 GYGNNGGGG--HGDGYGNN-GGGYGSVGGHGDGYGNNGG-GYGSVGGHGDGYGNNGGGYG 180

Query: 181 DSHGYGNGGGVDGGYGRGDGVGGHAGGSGIGAGGGYGGHAG----GSGIGAGGAYGSGGG 240
              G+G+G G +GG G GD  G   GGSG G+ GG G   G      G G+GG YG+GG 
Sbjct: 181 SVGGHGDGYGNNGGGGYGDRYGPSLGGSGYGSSGGKGSGNGYGDSSHGYGSGG-YGNGGV 240

Query: 241 HGGEHDNSKGSGEEGGYDGGYALTNSISNKN 256
           H GE+ NSKGSGEEGGYDGGYA  NSIS +N
Sbjct: 241 HEGEYGNSKGSGEEGGYDGGYAAKNSISKEN 259

[Close]

BLAST of CmaCh16G011640 vs. NCBI nr
Match: gi|778688294|ref|XP_011652712.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 9.5e-29
Identity = 136/255 (53.33%), Postives = 149/255 (58.43%), Query Frame = 1


Query: 1   MAITRAFCLSFLLLVGLGLTSAARTLLDYDPRTRHYGYNRPNPREGYDSGHRDESYDNVY 60
           MAI RA CL+FLL V LGL SA RTLLDYDPRT  YGY+RP+PR GYD GH DESYD  Y
Sbjct: 1   MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60

Query: 61  GGRSGGEYGVGGSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG S   +G+G SALGGSGY  GG    GYG+   +        GVG   YG G  YGG 
Sbjct: 61  GGSSSRGHGIGDSALGGSGYEGGGRHDYGYGDRHND-------RGVGYGNYGGG--YGGV 120

Query: 121 EDHGVGYGGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
             HG GYG        N G G YG      +G       G G+GNGY D H  GNG   D
Sbjct: 121 GGHGDGYG--------NNGGGSYGDRYGPSLGGSGYGSGGKGSGNGY-DDHSRGNGAR-D 180

Query: 181 GGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGG 240
             YG   G GG    SG G+GG           G  G YG+GG HGGE+DNSKGSGEEGG
Sbjct: 181 NSYGDSHGHGGR--DSGYGSGG-----------GVTGGYGNGGVHGGEYDNSKGSGEEGG 223

Query: 241 YDGGYALTNSISNKN 256
           YDGGYA+ NSIS  N
Sbjct: 241 YDGGYAVKNSISKGN 223

[Close]

BLAST of CmaCh16G011640 vs. NCBI nr
Match: gi|659096566|ref|XP_008449164.1| (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 2.7e-23
Identity = 150/299 (50.17%), Postives = 168/299 (56.19%), Query Frame = 1


Query: 1   MAITRAFCLSFLLLVGLGLTSAARTLLDYDPRTRHYGYNRPNPREGYDSGHRDESYDNVY 60
           MAI+RA C+SFLL V LGL SAARTLLDYDPRTR Y Y+ P PR GYD  HRD+SYDN Y
Sbjct: 1   MAISRALCISFLLFVCLGLASAARTLLDYDPRTRRYDYDHPTPRVGYDPSHRDQSYDNAY 60

Query: 61  GGRSGGEYGVGGSALGGSGYGSGGVRGSGYGNGGGN---AYGGGVSSGVGGAGYGSGSRY 120
           GG S   YGVG SALGGSG   GG  G  YG GG N     G G  +   GAGYG+G  Y
Sbjct: 61  GGSSNRGYGVGDSALGGSGRYEGG-GGHDYGYGGRNDDRGVGYGGRNDDHGAGYGAG--Y 120

Query: 121 GG-GEDHGVGYGG---GRSGGY----ENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGD 180
           GG  +D G GYGG    R  GY    ++ G G  G+  D   GYG RN +    G GYG+
Sbjct: 121 GGRNDDRGAGYGGRNDDRGAGYGRRNDDHGAGYGGRNDDRGAGYGGRNDD---RGVGYGN 180

Query: 181 SHGYGNGGGVDGGYGR------GDGVGGHAGGSGIGAGG-----GYGGHA---GGSGIGA 240
             GYG  GG   GYG       GD      GGSG G GG     GY  H+   GG   G 
Sbjct: 181 GGGYGGVGGHGDGYGNNVGGGYGDRYSPSLGGSGYGNGGKGSGNGYDDHSRGYGGHDNGY 240

Query: 241 GGAYGSGGG-------------------HGGEHDNSKGSGEEGGYDGGYALTNSISNKN 256
           G ++G GG                    HGGE+DNSKGSGE GG DGGYA+ NSIS +N
Sbjct: 241 GDSHGHGGRDSGYGSGGGVSGGYGNGGVHGGEYDNSKGSGEGGGNDGGYAVKNSISKEN 293

[Close]

BLAST of CmaCh16G011640 vs. NCBI nr
Match: gi|778675041|ref|XP_011650342.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21
Identity = 141/279 (50.54%), Postives = 160/279 (57.35%), Query Frame = 1


Query: 1   MAITRAFCLSFLLLVGLGLTSAARTLLDYD---PRTRHYGYNRP--NPREGYDSGHRDES 60
           MAI++     FLLLV LGL SAAR+LL YD    R+ +  Y+ P  NP+ GY+   RD  
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDGY 60

Query: 61  Y------DNVYGGRSGGEYGVG---GSALGGSGYGSGGVRGSGYG----------NGGGN 120
           Y      D  YGG +GG YG G   GS+LGGSGYGSGG  GSGYG          +GGG 
Sbjct: 61  YHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGGSGYGGVGNHEVGYGSGGGG 120

Query: 121 AYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYGGGRSGGYENGGNG--GYGQGRDHDIGYG 180
            YG GV S +GG+GYGSG   GGG   G G  GGR  GY +GG G  GYG   DH +GYG
Sbjct: 121 GYGAGVGSDLGGSGYGSGG--GGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGYG 180

Query: 181 SRNGNGNGNGNG-------YGDSHGYGNGGGVDGGYGRGDGVGGHAGGSGIGAGGGYGGH 240
           S  G G G+G G       +G  +G G GGG   GYG   G  G+ GGSG G G GYGG 
Sbjct: 181 SGGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYG---GSKGYGGGSGGGGGAGYGGG 240

Query: 241 AGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGGYDGGYA 247
           A GSG      YGSGGG         GSGEEGGYDGGYA
Sbjct: 241 AHGSG------YGSGGG--------AGSGEEGGYDGGYA 260

The following BLAST results are available for this feature:

BLAST of CmaCh16G011640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRP2_PHAVU	4.9e-09	46.26	Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris PE=2 SV=1	[more]

BLAST of CmaCh16G011640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1V3_CUCSA	6.6e-29	53.33	Glycine-rich protein-1 OS=Cucumis sativus GN=Csa_3G011070 PE=4 SV=1	[more]
A0A0A0L1U7_CUCSA	1.3e-21	50.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009540 PE=4 SV=1	[more]
Q9ZWM2_CUCSA	1.7e-21	50.54	Glycine-rich protein-2 (Fragment) OS=Cucumis sativus PE=2 SV=1	[more]
A0A0A0L190_CUCSA	2.6e-17	64.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010050 PE=4 SV=1	[more]
A0A0A0L3Y0_CUCSA	2.7e-14	46.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009550 PE=4 SV=1	[more]

BLAST of CmaCh16G011640 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G36120.1	6.3e-07	44.00	Glycine-rich protein family	[more]

BLAST of CmaCh16G011640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096568\|ref\|XP_008449165.1\|	1.2e-36	55.69	PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo]	[more]
gi\|659095616\|ref\|XP_008448676.1\|	3.5e-31	57.56	PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis ...	[more]
gi\|778688294\|ref\|XP_011652712.1\|	9.5e-29	53.33	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus]	[more]
gi\|659096566\|ref\|XP_008449164.1\|	2.7e-23	50.17	PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo]	[more]
gi\|778675041\|ref\|XP_011650342.1\|	1.9e-21	50.54	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011640.1	CmaCh16G011640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 201..219 score: 3.6E-8coord: 126..141 score: 3.6E-8coord: 6..22 score: 3.6E-8coord: 156..166 score: 3.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G011640	Cucurbita pepo (Zucchini)	cmacpeB345
CmaCh16G011640	Cucurbita pepo (Zucchini)	cmacpeB349
CmaCh16G011640	Cucurbita pepo (Zucchini)	cmacpeB360
CmaCh16G011640	Cucurbita pepo (Zucchini)	cmacpeB363
CmaCh16G011640	Bottle gourd (USVL1VR-Ls)	cmalsiB297
CmaCh16G011640	Bottle gourd (USVL1VR-Ls)	cmalsiB324
CmaCh16G011640	Cucumber (Gy14) v2	cgybcmaB339
CmaCh16G011640	Cucumber (Gy14) v2	cgybcmaB344
CmaCh16G011640	Melon (DHL92) v3.6.1	cmamedB333
CmaCh16G011640	Melon (DHL92) v3.6.1	cmamedB342
CmaCh16G011640	Silver-seed gourd	carcmaB0697
CmaCh16G011640	Silver-seed gourd	carcmaB1077
CmaCh16G011640	Silver-seed gourd	carcmaB1338
CmaCh16G011640	Silver-seed gourd	carcmaB1329
CmaCh16G011640	Cucumber (Chinese Long) v3	cmacucB0380
CmaCh16G011640	Cucumber (Chinese Long) v3	cmacucB0385
CmaCh16G011640	Watermelon (97103) v2	cmawmbB337
CmaCh16G011640	Watermelon (97103) v2	cmawmbB357
CmaCh16G011640	Wax gourd	cmawgoB0424
CmaCh16G011640	Wax gourd	cmawgoB0444
CmaCh16G011640	Cucurbita maxima (Rimu)	cmacmaB343
CmaCh16G011640	Cucurbita maxima (Rimu)	cmacmaB344
CmaCh16G011640	Cucurbita maxima (Rimu)	cmacmaB357
CmaCh16G011640	Cucumber (Gy14) v1	cgycmaB0862
CmaCh16G011640	Cucumber (Gy14) v1	cgycmaB0887
CmaCh16G011640	Cucurbita moschata (Rifu)	cmacmoB323
CmaCh16G011640	Cucurbita moschata (Rifu)	cmacmoB331
CmaCh16G011640	Cucurbita moschata (Rifu)	cmacmoB332
CmaCh16G011640	Cucurbita moschata (Rifu)	cmacmoB344
CmaCh16G011640	Wild cucumber (PI 183967)	cmacpiB332
CmaCh16G011640	Wild cucumber (PI 183967)	cmacpiB336
CmaCh16G011640	Cucumber (Chinese Long) v2	cmacuB326
CmaCh16G011640	Cucumber (Chinese Long) v2	cmacuB330
CmaCh16G011640	Melon (DHL92) v3.5.1	cmameB288
CmaCh16G011640	Melon (DHL92) v3.5.1	cmameB291
CmaCh16G011640	Watermelon (Charleston Gray)	cmawcgB279
CmaCh16G011640	Watermelon (Charleston Gray)	cmawcgB284
CmaCh16G011640	Watermelon (97103) v1	cmawmB291
CmaCh16G011640	Watermelon (97103) v1	cmawmB292