CmaCh16G011040 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G011040
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLil3 family protein
LocationCma_Chr16 : 8495173 .. 8498340 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGAAAAGTCCCCGAAGACGCTGCCACCGGCGAAAGGGATGAGAAAATTAGTGGAAAGCTGCGCCGTTCTCAGAGAGGAGGAGGACAATGACAACGTCCGGTTCGATTATCAATGGCGATATTCTGTTGGAAAGCGCGAAGCTGGAGGCAGTGGTGGCGACCTCCATGGCTATAAAACCTTGAAGAAGCAGAACGATAACCAAGCTGGAGGAGCGAAAATGGGAGATTTGTGGGCTTTTGAAGGTAATGGCTTAGGCCCAGCCCAAATCATTTTTTTTTCAAATATAGATTTTGTACCTATAAAAAAATTTAGACTTAAAAATAAATAAATTAATATCTAAATGAACCTAGCTTACATTTGAATGGAACCGATCTTAAGGAAAAGATTAAAATAACGGAAAGTTTCTATTTATACCAACAAGGTACACCGGTTCAATCACAGAAACTTCATGATTAAACGTACTCAGACCAATTCTATATTAAGTGATCTCTTATGAGTTTTTTAAAGATGTATGTGAGTGATGACAAAACATACTAGAAGAATTCGTGTTAATTGTGGGAATAGTTTTCCCTTCAGGGTATTATTAAAAAACTTTAAAATTCTAGAAAAAAGTTTATAAGGGTATTTTATTATTTTACACAAAATTAAACAATTTAGCTTCATCTTAATAATCATTACATATGAATTAAAAAAACATATTAAACAAGCTTGTGTTTAACCTTTTAATATAAAATTTAAAGAATTTAATAATATATTCCTTTCCACTTATTAATTTTAAAAAATATTTATATTATATTGTTTAAAATAAAAATTATTATTAGATTAAAATATCATTTTAATTTTTATAGATATCTAATTTTAGTTAAATAAATCTAAATTCAGTTTTATTTGATTTTTTTAGTAAAAAAAGTTCTTTATTTAACATTTTTTTTTAAATATATTCACCTAAGTATTTTAAGACTATTATTATTATTTAATAAATTTTGAAATACTAGATTTATTAGAATTAAATTTAATAATATTATTATTTAATCAACTTTATATATATATATTTATTTATTTATTTTTTAAGCAAGCACATTTATTATGGGCGAAAGTGCAAAGCTTCCCTATCCATCATAATTACAAGGCTGAGGATAGAGCTTTGAAGAGGAGGAGCTCTCTCTTCTTCTTCCTTCCACACCAAAACAATGTCTTCCATGGCTTTGTTTTCTCCTCCCTCCCGTCTTTCCTCTCTCTCTCCTTCTTCACATCACCGAACCCACTTCCCCTCCAGACCCTTTTCCTCTCTCAGGTCCAGAAACCCTTCTTCTTGGGTCGCTGCTGACAATGGCGCCGGAATTTCAGGTGGTTCCGTCGCTGTAGAACCCGCCGTCGTACAGAAGGATCCGGAGCCGGCGGTGGAAAAGAAAGAGAGCCTTGCTGAAACCAATGGGTCGGTGGCGGCTGTGGAAGAAGTGGTGGTGGTTAGCAAATTTGAAGACCCTAAATGGGTTAATGGGACTTGGGATTTGAATCAGTTCCGGAAAGATGGAAGTACTGATTGGGATGCTGTTATTGATGCTGGTAATCTTCGTAAACCCTACATTTTCTGTTGATTTTGCTTCTAATTGCATTACGAAATCTGGATGTACATAGATACATGCAATGTCTGAGAAGCTTTTTTGGGGAAATCTTGATCTGCAAGTTTTGATGATGTTTAGATTGTAATGGATTTCTTGGCGATGTTTGAGCAATTACTTGATGTTTGAATCAGAGGCTAGGAGGAGGAAATGGCTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGCTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTGCCAGAGGCTGAGATTCTCAATGGTATAAAACATGTTTCTATGATTGCTTATCTTGTTTTCTTAAAGCTTGTCTGTGTGAAATAATGGCTAAATGTGAATGTTTGAAAATCGTGTTTAGAAGTGTAAAATTGAATATTAATTTGATTTTGAATGTTTAAACACATGTTCTTGAGTGATTATGAACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAACGTATTTCTTGTTCTTTCGTTCATGTCTGTGAATCATGATTTCTACATGTTCATTGTATTGGCTTCTCTGTATGAAAATCATGTTTAAAAGTGTAAAATCATACATGGAAGTTGATTTTGAATGTTTAAACACATGTTCTTGAGTGATTTTGAGCATGTTCTTGAGTGATTTTGAACGTGAAGGACCGATTTTAACCATTTGAAAATCACTCGATCGTATTTTTTGTTCTTTCTTTCACGTCTGTGGATCATGATTTCTACTTGTTCATAACATTGGCTTCTCCATATGAAAATCACGTTTAAAAGCGTAAAATCATACATTAAGATGATTTTGAATGTTCAAACGCATGTTCTTGACGTGAATGACTGATTTTAACCATTTGAAAATCACTCAAACGTATTTTTTGATGATTTTGAATGTTCAAACGCATGTTCTTGAGTGATTTTGAACGTGAATGACTGATTTTAACCATTTGAAAATCACTCGATCATACTTTGTTCTTGAGTATTTCTACGTATAACGTTGGCTTCTCTGTAACTTACAAGTAATATTGTGTCAAGTAAAGTATTGAATCTACTATAACATTGAAGTAAATTTGAGCGGTGCAATGGTTTCGATGCAGGCCGTGCAGCCATGGTGGGGTTTTTCATGGCTTACTTCGTCGATAGCTTGACGGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACTTTGTTATTTGTTGCAGTGGTGGGAGTTCTTTTGATCAGAAAGAATGAAGATATAGAGACTCTAAAGAAGTTGATTGATGAGACGACATTTTATGATAAACAATGGCAAGCAACTTGGCAGGATGAAACCAAAGGCTCAGGCAAAGTGTAATGTGGCAAAGTTGCCTGTGTTCTTGTTTTGCTTTAATTATGTTTGCATCTCATAAGATTTGGGCTTAGTAGAGAAGGATAATGTGAGCTCTGAAAGATATTGAACGTTTAGGCCTCAGTTTGTTAATGTTTCTTGAAGTTGTTGAGGGTTTCAATGAAAAATCTCTCTCTAAAAGGTTGGGTTTTCTGAAAAAAAAAA

mRNA sequence

ATGCCGGAAAAGTCCCCGAAGACGCTGCCACCGGCGAAAGGGATGAGAAAATTAGTGGAAAGCTGCGCCGTTCTCAGAGAGGAGGAGGACAATGACAACGTCCGGTTCGATTATCAATGGCGATATTCTGTTGGAAAGCGCGAAGCTGGAGGCAGTGGTGGCGACCTCCATGGCTATAAAACCTTGAAGAAGCAGAACGATAACCAAGCTGGAGGAGCGAAAATGGGAGATTTGTGGGCTTTTGAAGGAGGAGCTCTCTCTTCTTCTTCCTTCCACACCAAAACAATGTCTTCCATGGCTTTGTTTTCTCCTCCCTCCCGTCTTTCCTCTCTCTCTCCTTCTTCACATCACCGAACCCACTTCCCCTCCAGACCCTTTTCCTCTCTCAGGTCCAGAAACCCTTCTTCTTGGGTCGCTGCTGACAATGGCGCCGGAATTTCAGGTGGTTCCGTCGCTGTAGAACCCGCCGTCGTACAGAAGGATCCGGAGCCGGCGGTGGAAAAGAAAGAGAGCCTTGCTGAAACCAATGGGTCGGTGGCGGCTGTGGAAGAAGTGGTGGTGGTTAGCAAATTTGAAGACCCTAAATGGGTTAATGGGACTTGGGATTTGAATCAGTTCCGGAAAGATGGAAGTACTGATTGGGATGCTGTTATTGATGCTGAGGCTAGGAGGAGGAAATGGCTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGCTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTGCCAGAGGCTGAGATTCTCAATGGCCGTGCAGCCATGGTGGGGTTTTTCATGGCTTACTTCGTCGATAGCTTGACGGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACTTTGTTATTTGTTGCAGTGGTGGGAGTTCTTTTGATCAGAAAGAATGAAGATATAGAGACTCTAAAGAAGTTGATTGATGAGACGACATTTTATGATAAACAATGGCAAGCAACTTGGCAGGATGAAACCAAAGGCTCAGGCAAAGTGTAATGTGGCAAAGTTGCCTGTGTTCTTGTTTTGCTTTAATTATGTTTGCATCTCATAAGATTTGGGCTTAGTAGAGAAGGATAATGTGAGCTCTGAAAGATATTGAACGTTTAGGCCTCAGTTTGTTAATGTTTCTTGAAGTTGTTGAGGGTTTCAATGAAAAATCTCTCTCTAAAAGGTTGGGTTTTCTGAAAAAAAAAA

Coding sequence (CDS)

ATGCCGGAAAAGTCCCCGAAGACGCTGCCACCGGCGAAAGGGATGAGAAAATTAGTGGAAAGCTGCGCCGTTCTCAGAGAGGAGGAGGACAATGACAACGTCCGGTTCGATTATCAATGGCGATATTCTGTTGGAAAGCGCGAAGCTGGAGGCAGTGGTGGCGACCTCCATGGCTATAAAACCTTGAAGAAGCAGAACGATAACCAAGCTGGAGGAGCGAAAATGGGAGATTTGTGGGCTTTTGAAGGAGGAGCTCTCTCTTCTTCTTCCTTCCACACCAAAACAATGTCTTCCATGGCTTTGTTTTCTCCTCCCTCCCGTCTTTCCTCTCTCTCTCCTTCTTCACATCACCGAACCCACTTCCCCTCCAGACCCTTTTCCTCTCTCAGGTCCAGAAACCCTTCTTCTTGGGTCGCTGCTGACAATGGCGCCGGAATTTCAGGTGGTTCCGTCGCTGTAGAACCCGCCGTCGTACAGAAGGATCCGGAGCCGGCGGTGGAAAAGAAAGAGAGCCTTGCTGAAACCAATGGGTCGGTGGCGGCTGTGGAAGAAGTGGTGGTGGTTAGCAAATTTGAAGACCCTAAATGGGTTAATGGGACTTGGGATTTGAATCAGTTCCGGAAAGATGGAAGTACTGATTGGGATGCTGTTATTGATGCTGAGGCTAGGAGGAGGAAATGGCTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGCTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTGCCAGAGGCTGAGATTCTCAATGGCCGTGCAGCCATGGTGGGGTTTTTCATGGCTTACTTCGTCGATAGCTTGACGGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACTTTGTTATTTGTTGCAGTGGTGGGAGTTCTTTTGATCAGAAAGAATGAAGATATAGAGACTCTAAAGAAGTTGATTGATGAGACGACATTTTATGATAAACAATGGCAAGCAACTTGGCAGGATGAAACCAAAGGCTCAGGCAAAGTGTAA

Protein sequence

MPEKSPKTLPPAKGMRKLVESCAVLREEEDNDNVRFDYQWRYSVGKREAGGSGGDLHGYKTLKKQNDNQAGGAKMGDLWAFEGGALSSSSFHTKTMSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAVEPAVVQKDPEPAVEKKESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQATWQDETKGSGKV
Homology
[Close]
BLAST of CmaCh16G011040 vs. TrEMBL
Match: A0A0A0L5D8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017160 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 1.1e-116
Identity = 226/267 (84.64%), Postives = 236/267 (88.39%), Query Frame = 1 

Query: 96  MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSW--------VAADNGAGIS 155
           MSSMALFSP S LS+ SPS HH THF  RPFSSLR+RNPSS           ADNGAGIS
Sbjct: 1   MSSMALFSPSSHLSTFSPS-HHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGIS 60

Query: 156 GGS--VAVEPAVVQKDPEPAV---EKKESLAETNGSVAAVEEVV-VVSKFEDPKWVNGTW 215
           GGS  V+VE  V QKDPEPA    E++ESLA TNGSVAA EEVV VVSKFEDPKWVNGTW
Sbjct: 61  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 120

Query: 216 DLNQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPE 275
           DLNQF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPE
Sbjct: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180

Query: 276 AEILNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 335
           AE+LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK
Sbjct: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240

Query: 336 KLIDETTFYDKQWQATWQDETKGSGKV 349
           KLIDETTFYDKQWQATWQDET GSGK+
Sbjct: 241 KLIDETTFYDKQWQATWQDETSGSGKM 266

[Close]
BLAST of CmaCh16G011040 vs. TrEMBL
Match: W9SG48_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023403 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 1.2e-92
Identity = 179/255 (70.20%), Postives = 201/255 (78.82%), Query Frame = 1 

Query: 96  MSSMALFSPPSRLSSLSPSSH-HRTHFPSRPFSSLRSRNPSSW---VAADNGAGISGGSV 155
           MSSMALFSPP+   +LSPSS   +T F  +P    R + P  +    +ADNGAG  G + 
Sbjct: 1   MSSMALFSPPTHFPTLSPSSSLSKTQFSHKPHLLFRPKYPLLFRLKASADNGAGAPGSAA 60

Query: 156 AV---EPAVVQKDPEPAVEKKESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRK 215
           A    +P    K PEP+    ES    NG V    EV V+SKFEDPKWVNGTWDL QF+K
Sbjct: 61  ATAVEDPKAPPKVPEPS----ESSDGANGLVPPAPEVGVLSKFEDPKWVNGTWDLTQFQK 120

Query: 216 DGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGR 275
           DG TDWDAVIDAEARRRKW E+NPESSSNE+P++FDTSI+PWWAWIKRYHLPEAE+LNGR
Sbjct: 121 DGKTDWDAVIDAEARRRKWFEDNPESSSNENPIVFDTSIIPWWAWIKRYHLPEAELLNGR 180

Query: 276 AAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETT 335
           AAMVGFFMAYFVDSLTGVGLV QMGNFFCKTLLF+AV GVLLIRKNEDIET+KKL++ETT
Sbjct: 181 AAMVGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFIAVAGVLLIRKNEDIETIKKLLEETT 240

Query: 336 FYDKQWQATWQDETK 344
           FYDKQWQATWQDE K
Sbjct: 241 FYDKQWQATWQDENK 251

[Close]
BLAST of CmaCh16G011040 vs. TrEMBL
Match: M5WA97_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010089mg PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 5.4e-90
Identity = 179/256 (69.92%), Postives = 203/256 (79.30%), Query Frame = 1 

Query: 98  SMALFSPPSRLSSLSPSSHH-RTHFPSRPFSSLRSRNP--SSWVAADNGAG-ISGGSVAV 157
           SMALFSP + + +LSPSS + + +   +P+ SLR +NP  ++  +A+NGAG ++  + AV
Sbjct: 4   SMALFSPTTHIPTLSPSSSYSKPNLIHKPYLSLRPKNPLFTARASAENGAGALASAATAV 63

Query: 158 EPAVVQKDPEPAVE---KKESLAETNGSVAA-VEEVVVVSKFEDPKWVNGTWDLNQFRKD 217
           +     K PEP      K ES A  NGS AA  EEV VV  FED +WVNGTWDL QF K 
Sbjct: 64  KSEAEPKVPEPVEPVPVKTESSAGANGSAAAPAEEVKVVGLFEDSRWVNGTWDLKQFEKS 123

Query: 218 GSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRA 277
           G TDWDAVIDAEARRRKWL++NPESSSNE+PV FDTSIVPWWAWIKRYHLPEAE+LNGRA
Sbjct: 124 GKTDWDAVIDAEARRRKWLQDNPESSSNENPVFFDTSIVPWWAWIKRYHLPEAELLNGRA 183

Query: 278 AMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETTF 337
           AMVGFFMAY VDSLTGVGLV QMGNFFCKTLLFVAV GVLLIRKNED+E LKKL+DETTF
Sbjct: 184 AMVGFFMAYLVDSLTGVGLVDQMGNFFCKTLLFVAVSGVLLIRKNEDVENLKKLLDETTF 243

Query: 338 YDKQWQATWQDETKGS 346
           YDKQWQATWQDET  S
Sbjct: 244 YDKQWQATWQDETPAS 259

[Close]
BLAST of CmaCh16G011040 vs. TrEMBL
Match: A0A067KUX7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03488 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 2.7e-89
Identity = 178/261 (68.20%), Postives = 202/261 (77.39%), Query Frame = 1 

Query: 98  SMALFSPP---SRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAA-----DNGAGISGG 157
           SMALFSPP     L SLSP    + HF  +P   LR  NP  +++      DNGAG+S  
Sbjct: 4   SMALFSPPLPTHLLRSLSP----KPHFTHKPSLLLRPTNPLFFLSTPKASTDNGAGLS-- 63

Query: 158 SVAVEPAVVQKDPEPA---VEKKESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQF 217
           +   EP   QK  EP+    E KES  E+NG+VA   EV + SKF DP+W+ GTWDL QF
Sbjct: 64  AAVEEPKAEQKAAEPSGSVPEAKESSLESNGAVAD-GEVKLESKFVDPRWIGGTWDLKQF 123

Query: 218 RKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILN 277
           ++DG TDWDAVIDAE RRRKWLE NPESSSN+DPV+FDTSI+PWWAW+KR+HLPEAE+LN
Sbjct: 124 QRDGKTDWDAVIDAEVRRRKWLEGNPESSSNDDPVVFDTSIIPWWAWMKRFHLPEAELLN 183

Query: 278 GRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDE 337
           GRAAM+GFFMAYFVDSLTGVGLV QM NFFCKTLLFVAVVGVLLIRKNED+ETLKKL+DE
Sbjct: 184 GRAAMIGFFMAYFVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDLETLKKLLDE 243

Query: 338 TTFYDKQWQATWQDETKGSGK 348
           TTFYDKQWQATWQDET G  K
Sbjct: 244 TTFYDKQWQATWQDETPGGSK 257

[Close]
BLAST of CmaCh16G011040 vs. TrEMBL
Match: B9SEE4_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_0703150 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 7.2e-87
Identity = 174/257 (67.70%), Postives = 197/257 (76.65%), Query Frame = 1 

Query: 98  SMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAA-----DNGAGISGGSVA 157
           SMALFSPP      S SS  + H  ++P S L   NP    +A     DNGAGIS  + A
Sbjct: 4   SMALFSPPPTQFLRSLSS--KPHLLTKPTSFLTPINPPFLFSAPKASTDNGAGISAAAAA 63

Query: 158 VEPA--VVQKDPEPAVEKKESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKDG 217
           VE       K  EP+    ES   +NG+V   E V + SKF DP+W+ GTWDL QF+KDG
Sbjct: 64  VEEPKEAEPKAAEPSPAAVESSLGSNGAVKDAE-VKLESKFVDPRWIGGTWDLKQFQKDG 123

Query: 218 STDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRAA 277
           STDWD+VIDAE RRRKWLE+NPESS+N+DPV+FDTSI+PWWAW+KR+HLPEAE+LNGRAA
Sbjct: 124 STDWDSVIDAEVRRRKWLESNPESSTNDDPVVFDTSIIPWWAWMKRFHLPEAELLNGRAA 183

Query: 278 MVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETTFY 337
           MVGFFMAYFVDSLTGVGLV QMGNFFCKTLLF+AV GVLLIRKNEDIETLKKL+DETTFY
Sbjct: 184 MVGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFIAVAGVLLIRKNEDIETLKKLVDETTFY 243

Query: 338 DKQWQATWQDETKGSGK 348
           DKQWQATWQDET  S K
Sbjct: 244 DKQWQATWQDETPSSSK 257

[Close]
BLAST of CmaCh16G011040 vs. TAIR10
Match: AT4G17600.1 (AT4G17600.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 292.4 bits (747), Expect = 3.8e-79
Identity = 159/265 (60.00%), Postives = 189/265 (71.32%), Query Frame = 1 

Query: 99  MALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPS----SWVAADNGAGISGGSVAVE 158
           MALFSPP   SSL     +    P   FS L S   S    +  ++D+G+     +V+VE
Sbjct: 1   MALFSPPISSSSLQ----NPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVE 60

Query: 159 PA----VVQKDPE---PAVEKKESLAETNGSVAAVEEVVVVS--KFEDPKWVNGTWDLNQ 218
                 V+ K+P    PAV+K+E+    N +V   E     S  KF+D +W+NGTWDL Q
Sbjct: 61  APEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQ 120

Query: 219 FRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEIL 278
           F KDG TDWD+VI AEA+RRKWLE NPE++SN++PVLFDTSI+PWWAWIKRYHLPEAE+L
Sbjct: 121 FEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELL 180

Query: 279 NGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLID 338
           NGRAAM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLFVAV GVL IRKNED++ LK L D
Sbjct: 181 NGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFD 240

Query: 339 ETTFYDKQWQATWQ---DETKGSGK 348
           ETT YDKQWQA W+   DE+ GS K
Sbjct: 241 ETTLYDKQWQAAWKNDDDESLGSKK 261

[Close]
BLAST of CmaCh16G011040 vs. TAIR10
Match: AT5G47110.1 (AT5G47110.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 271.6 bits (693), Expect = 7.0e-73
Identity = 145/251 (57.77%), Postives = 177/251 (70.52%), Query Frame = 1 

Query: 98  SMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSWVAADNGAGISGGSVAV---- 157
           SMALFSPP   S  +P+   +        +SL S    S ++    +  +G +  V    
Sbjct: 4   SMALFSPPISSSLQNPNLIPKIS------TSLLSTKRFSLISVPRASSDNGTTSPVVEIP 63

Query: 158 EPAVVQKDPEPAVEKKESL-AETNGSV---AAVEEVVVVSKFEDPKWVNGTWDLNQFRKD 217
           +PA V  +  P     ES  A  NG+V   A       V K+++ KWVNGTWDL QF KD
Sbjct: 64  KPASVAVEEVPVKSPAESSSASENGAVGGEATDSSTETVIKYQNAKWVNGTWDLKQFEKD 123

Query: 218 GSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRA 277
           G TDWD+VI +EA+RRKWLE+NPE++SN++ V+FDTSI+PWWAW+KRYHLPEAE+LNGRA
Sbjct: 124 GKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNGRA 183

Query: 278 AMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETTF 337
           AM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLFVAV GVL IRKNED++ LK L DETT 
Sbjct: 184 AMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLKDLFDETTL 243

Query: 338 YDKQWQATWQD 341
           YDKQWQA W++
Sbjct: 244 YDKQWQAAWKE 248

[Close]
BLAST of CmaCh16G011040 vs. NCBI nr
Match: gi|659095806|ref|XP_008448777.1| (PREDICTED: uncharacterized protein LOC103490842 [Cucumis melo])

HSP 1 Score: 430.3 bits (1105), Expect = 3.3e-117
Identity = 228/266 (85.71%), Postives = 236/266 (88.72%), Query Frame = 1 

Query: 96  MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSW---------VAADNGAGI 155
           MSSMALFSP S LS+LSPSSHH THF  RPFSSLR+RNPSS            ADNGAGI
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 156 SGGS--VAVEPAVVQKDPEPAVEKKESLAETNGSVAAVEEVV-VVSKFEDPKWVNGTWDL 215
           SGGS  VAVE  V QKDPEPA   +ESLA TNGSVAA EEVV VVSKFEDPKWVNGTWDL
Sbjct: 61  SGGSATVAVETPVEQKDPEPA---EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWDL 120

Query: 216 NQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAE 275
           NQF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPEAE
Sbjct: 121 NQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAE 180

Query: 276 ILNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKL 335
           +LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKL
Sbjct: 181 LLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKL 240

Query: 336 IDETTFYDKQWQATWQDET-KGSGKV 349
           IDETTFYDKQWQATWQDET  GSGK+
Sbjct: 241 IDETTFYDKQWQATWQDETSSGSGKM 263

[Close]
BLAST of CmaCh16G011040 vs. NCBI nr
Match: gi|449459006|ref|XP_004147237.1| (PREDICTED: uncharacterized protein LOC101206464 [Cucumis sativus])

HSP 1 Score: 427.9 bits (1099), Expect = 1.6e-116
Identity = 226/267 (84.64%), Postives = 236/267 (88.39%), Query Frame = 1 

Query: 96  MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSSW--------VAADNGAGIS 155
           MSSMALFSP S LS+ SPS HH THF  RPFSSLR+RNPSS           ADNGAGIS
Sbjct: 1   MSSMALFSPSSHLSTFSPS-HHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGIS 60

Query: 156 GGS--VAVEPAVVQKDPEPAV---EKKESLAETNGSVAAVEEVV-VVSKFEDPKWVNGTW 215
           GGS  V+VE  V QKDPEPA    E++ESLA TNGSVAA EEVV VVSKFEDPKWVNGTW
Sbjct: 61  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 120

Query: 216 DLNQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPE 275
           DLNQF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPE
Sbjct: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180

Query: 276 AEILNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 335
           AE+LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK
Sbjct: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240

Query: 336 KLIDETTFYDKQWQATWQDETKGSGKV 349
           KLIDETTFYDKQWQATWQDET GSGK+
Sbjct: 241 KLIDETTFYDKQWQATWQDETSGSGKM 266

[Close]
BLAST of CmaCh16G011040 vs. NCBI nr
Match: gi|1009157292|ref|XP_015896688.1| (PREDICTED: uncharacterized protein LOC107430367 [Ziziphus jujuba])

HSP 1 Score: 364.4 bits (934), Expect = 2.2e-97
Identity = 186/258 (72.09%), Postives = 211/258 (81.78%), Query Frame = 1 

Query: 97  SSMALFSPPS-RLSSLSPSSHHRTHFPSRPFSSLRSRNPS--SWVAADNGAG-ISGGSVA 156
           SSMALFSPP+  L +LSPSS  + H   +P+  LR +NP   S   +DNGAG +S  + A
Sbjct: 3   SSMALFSPPNTHLPTLSPSSFPKPHLTHKPYLFLRPKNPVFLSKATSDNGAGSLSSAATA 62

Query: 157 VEPAV---VQKDPEPAVEKKESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRKD 216
           VEP     V +  EPA EK E+ + +NGS    +EV VVSKFEDPKWVNGTW+L QF+KD
Sbjct: 63  VEPIAEPKVSQASEPAFEKNETSSSSNGSAGTAKEVEVVSKFEDPKWVNGTWNLKQFQKD 122

Query: 217 GSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRA 276
             TDWDAVIDAEARRRKWLE+NPESSSN++P++FDTSI+PWWAWIKRYHLPEAE+LNGRA
Sbjct: 123 SKTDWDAVIDAEARRRKWLESNPESSSNDEPIVFDTSIIPWWAWIKRYHLPEAELLNGRA 182

Query: 277 AMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETTF 336
           AM+GFFMAY VDSLTGVGLV QMGNFFCKTLLFVAVVGVLLIRKNEDI TLKKL+DETTF
Sbjct: 183 AMIGFFMAYLVDSLTGVGLVDQMGNFFCKTLLFVAVVGVLLIRKNEDIGTLKKLLDETTF 242

Query: 337 YDKQWQATWQDETKGSGK 348
           YDKQWQATWQDET GS K
Sbjct: 243 YDKQWQATWQDETPGSSK 260

[Close]
BLAST of CmaCh16G011040 vs. NCBI nr
Match: gi|703153007|ref|XP_010110568.1| (hypothetical protein L484_023403 [Morus notabilis])

HSP 1 Score: 348.2 bits (892), Expect = 1.7e-92
Identity = 179/255 (70.20%), Postives = 201/255 (78.82%), Query Frame = 1 

Query: 96  MSSMALFSPPSRLSSLSPSSH-HRTHFPSRPFSSLRSRNPSSW---VAADNGAGISGGSV 155
           MSSMALFSPP+   +LSPSS   +T F  +P    R + P  +    +ADNGAG  G + 
Sbjct: 1   MSSMALFSPPTHFPTLSPSSSLSKTQFSHKPHLLFRPKYPLLFRLKASADNGAGAPGSAA 60

Query: 156 AV---EPAVVQKDPEPAVEKKESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLNQFRK 215
           A    +P    K PEP+    ES    NG V    EV V+SKFEDPKWVNGTWDL QF+K
Sbjct: 61  ATAVEDPKAPPKVPEPS----ESSDGANGLVPPAPEVGVLSKFEDPKWVNGTWDLTQFQK 120

Query: 216 DGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGR 275
           DG TDWDAVIDAEARRRKW E+NPESSSNE+P++FDTSI+PWWAWIKRYHLPEAE+LNGR
Sbjct: 121 DGKTDWDAVIDAEARRRKWFEDNPESSSNENPIVFDTSIIPWWAWIKRYHLPEAELLNGR 180

Query: 276 AAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETT 335
           AAMVGFFMAYFVDSLTGVGLV QMGNFFCKTLLF+AV GVLLIRKNEDIET+KKL++ETT
Sbjct: 181 AAMVGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFIAVAGVLLIRKNEDIETIKKLLEETT 240

Query: 336 FYDKQWQATWQDETK 344
           FYDKQWQATWQDE K
Sbjct: 241 FYDKQWQATWQDENK 251

[Close]
BLAST of CmaCh16G011040 vs. NCBI nr
Match: gi|645266178|ref|XP_008238501.1| (PREDICTED: uncharacterized protein LOC103337126 [Prunus mume])

HSP 1 Score: 341.7 bits (875), Expect = 1.6e-90
Identity = 180/256 (70.31%), Postives = 201/256 (78.52%), Query Frame = 1 

Query: 98  SMALFSPPSRLSSLSPSSHHRT-HFPSRPFSSLRSRNP--SSWVAADNGAGISGGSV-AV 157
           SMALFSP + + +LSPSS +   H   +P+ SLR +NP  ++  + +NGAG  G +  AV
Sbjct: 4   SMALFSPTTHIPTLSPSSSYSNPHLTHKPYLSLRPKNPLFTTKASGENGAGALGSAATAV 63

Query: 158 EPAVVQKDPEPAVE---KKESLAETNGSVAA-VEEVVVVSKFEDPKWVNGTWDLNQFRKD 217
           +P    K PEP      K ES A  NGS AA  EEV VV  FED +WVNGTW+L QF K 
Sbjct: 64  KPEAEPKVPEPVEPVPVKTESSAGANGSAAAPAEEVKVVGLFEDSRWVNGTWNLKQFEKS 123

Query: 218 GSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEILNGRA 277
           G TDWDAVIDAEARRRKWL++NPESSSNE+PV FDTSIVPWWAWIKRYHLPEAE+LNGRA
Sbjct: 124 GKTDWDAVIDAEARRRKWLQDNPESSSNENPVFFDTSIVPWWAWIKRYHLPEAELLNGRA 183

Query: 278 AMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETTF 337
           AMVGFFMAY VDSLTGVGLV QMGNFFCKTLLFVAV GVLLIRKNED+E LKKL+DETTF
Sbjct: 184 AMVGFFMAYLVDSLTGVGLVDQMGNFFCKTLLFVAVSGVLLIRKNEDVENLKKLLDETTF 243

Query: 338 YDKQWQATWQDETKGS 346
           YDKQWQATWQDET  S
Sbjct: 244 YDKQWQATWQDETPAS 259

The following BLAST results are available for this feature:
BLAST of CmaCh16G011040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh16G011040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5D8_CUCSA1.1e-11684.64Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017160 PE=4 SV=1[more]
W9SG48_9ROSA1.2e-9270.20Uncharacterized protein OS=Morus notabilis GN=L484_023403 PE=4 SV=1[more]
M5WA97_PRUPE5.4e-9069.92Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010089mg PE=4 SV=1[more]
A0A067KUX7_JATCU2.7e-8968.20Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03488 PE=4 SV=1[more]
B9SEE4_RICCO7.2e-8767.70Transcription factor, putative OS=Ricinus communis GN=RCOM_0703150 PE=4 SV=1[more]
BLAST of CmaCh16G011040 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17600.13.8e-7960.00 Chlorophyll A-B binding family protein[more]
AT5G47110.17.0e-7357.77 Chlorophyll A-B binding family protein[more]
BLAST of CmaCh16G011040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095806|ref|XP_008448777.1|3.3e-11785.71PREDICTED: uncharacterized protein LOC103490842 [Cucumis melo][more]
gi|449459006|ref|XP_004147237.1|1.6e-11684.64PREDICTED: uncharacterized protein LOC101206464 [Cucumis sativus][more]
gi|1009157292|ref|XP_015896688.1|2.2e-9772.09PREDICTED: uncharacterized protein LOC107430367 [Ziziphus jujuba][more]
gi|703153007|ref|XP_010110568.1|1.7e-9270.20hypothetical protein L484_023403 [Morus notabilis][more]
gi|645266178|ref|XP_008238501.1|1.6e-9070.31PREDICTED: uncharacterized protein LOC103337126 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G011040.1CmaCh16G011040.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 201..297
score: 4.45
NoneNo IPR availableGENE3DG3DSA:1.20.1620.10coord: 246..292
score: 1.
NoneNo IPR availablePANTHERPTHR14154UPF0041 BRAIN PROTEIN 44-RELATEDcoord: 187..340
score: 1.9
NoneNo IPR availablePANTHERPTHR14154:SF14SUBFAMILY NOT NAMEDcoord: 187..340
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G011040Cucsa.321330Cucumber (Gy14) v1cgycmaB0889
CmaCh16G011040Cla005596Watermelon (97103) v1cmawmB295
CmaCh16G011040Csa3G017160Cucumber (Chinese Long) v2cmacuB319
CmaCh16G011040MELO3C013899Melon (DHL92) v3.5.1cmameB297
CmaCh16G011040ClCG10G002240Watermelon (Charleston Gray)cmawcgB281
CmaCh16G011040CSPI03G02260Wild cucumber (PI 183967)cmacpiB325
CmaCh16G011040CmoCh06G008370Cucurbita moschata (Rifu)cmacmoB343
CmaCh16G011040CmoCh16G011530Cucurbita moschata (Rifu)cmacmoB323
CmaCh16G011040Lsi07G012540Bottle gourd (USVL1VR-Ls)cmalsiB322
CmaCh16G011040Cp4.1LG14g09170Cucurbita pepo (Zucchini)cmacpeB345
CmaCh16G011040Cp4.1LG08g07110Cucurbita pepo (Zucchini)cmacpeB364
CmaCh16G011040MELO3C013899.2Melon (DHL92) v3.6.1cmamedB335
CmaCh16G011040CsaV3_3G002290Cucumber (Chinese Long) v3cmacucB0372
CmaCh16G011040Cla97C10G186830Watermelon (97103) v2cmawmbB333
CmaCh16G011040Bhi11G000069Wax gourdcmawgoB0420
CmaCh16G011040CsGy3G002160Cucumber (Gy14) v2cgybcmaB331
CmaCh16G011040Carg23248Silver-seed gourdcarcmaB0989
CmaCh16G011040Carg12045Silver-seed gourdcarcmaB0786
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh16G011040CmaCh06G008140Cucurbita maxima (Rimu)cmacmaB356
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G011040Cucumber (Chinese Long) v3cmacucB0377
CmaCh16G011040Watermelon (97103) v2cmawmbB356
CmaCh16G011040Cucurbita maxima (Rimu)cmacmaB341
CmaCh16G011040Cucurbita maxima (Rimu)cmacmaB347
CmaCh16G011040Cucumber (Gy14) v1cgycmaB0861
CmaCh16G011040Watermelon (Charleston Gray)cmawcgB278
CmaCh16G011040Cucurbita moschata (Rifu)cmacmoB334
CmaCh16G011040Wild cucumber (PI 183967)cmacpiB330
CmaCh16G011040Cucumber (Chinese Long) v2cmacuB324
CmaCh16G011040Melon (DHL92) v3.5.1cmameB289
CmaCh16G011040Watermelon (97103) v1cmawmB290
CmaCh16G011040Cucurbita pepo (Zucchini)cmacpeB359
CmaCh16G011040Bottle gourd (USVL1VR-Ls)cmalsiB319
CmaCh16G011040Cucumber (Gy14) v2cgybcmaB335
CmaCh16G011040Melon (DHL92) v3.6.1cmamedB334
CmaCh16G011040Silver-seed gourdcarcmaB1078