CmaCh16G010260 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G010260
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr16 : 7888925 .. 7889518 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGATGAGACACTCGGTATTGTTTTATTCAACCCTTTTACTACCTATGATGAAATTGAGGGAATTCTAGGCCACATAATTAAAGCAATACTAACCAAAGATCCATCGTTATATCCAAACAATTATATGGTTGTAGCTATCTTTGGTACATATAAAAGATTGTGTCTGATAAGAGTAAATGATTAAACTTGGACGTATTACTATCCAACACCAAACATTCATTTTAATGATATTAATATTAGTACTGGAATGTTTGGAAATTTGAAATTGAGAATAGTGACGATGAAAGTTCATCTATTTTTATTTATGTAAAGATGGTCCACACAATAGAAATGAGGGACATAGTTATGTCGTATATTACGGTTGTTTTGAGGATATTAGACTTTGGAGAAGAACAATTCGAGATGGTGGACTTTGAAGTTTACAAACTTATCCATGAGAATGAAGATGAGATGCGAACCGCGGTAGAGGTGAAGAGCTTAGAATGAAGATGAGATGCGAACCGCGGTAGAGGTGAAGAGCTTAGATGGTGCACAAACAAATTTGCCTAGTCCCATATGGATCATCCCAACCATATGCTTGGATGATTAA

mRNA sequence

ATGCGTGATGAGACACTCGGTATTGTTTTATTCAACCCTTTTACTACCTATGATGAAATTGAGGGAATTCTAGGCCACATAATTAAAGCAATACTAACCAAAGATCCATCGTTATATCCAAACAATTATATGGTTGTAGCTATCTTTGGTACATATAAAAGATTGTGTCTGATAAGATACTGGAATGTTTGGAAATTTGAAATTGAGAATAGTGACGATGAAAGTTCATCTATTTTTATTTATGTAAAGATGGTCCACACAATAGAAATGAGGGACATAGTTATGTCGTATATTACGGTTGTTTTGAGGATATTAGACTTTGGAGAAGAACAATTCGAGATGGTGGACTTTGAAGTTTACAAACTTATCCATGAGAATGAAGATGAGATGCGAACCGCGGTAGAGAATGAAGATGAGATGCGAACCGCGGTAGAGGTGAAGAGCTTAGATGGTGCACAAACAAATTTGCCTAGTCCCATATGGATCATCCCAACCATATGCTTGGATGATTAA

Coding sequence (CDS)

ATGCGTGATGAGACACTCGGTATTGTTTTATTCAACCCTTTTACTACCTATGATGAAATTGAGGGAATTCTAGGCCACATAATTAAAGCAATACTAACCAAAGATCCATCGTTATATCCAAACAATTATATGGTTGTAGCTATCTTTGGTACATATAAAAGATTGTGTCTGATAAGATACTGGAATGTTTGGAAATTTGAAATTGAGAATAGTGACGATGAAAGTTCATCTATTTTTATTTATGTAAAGATGGTCCACACAATAGAAATGAGGGACATAGTTATGTCGTATATTACGGTTGTTTTGAGGATATTAGACTTTGGAGAAGAACAATTCGAGATGGTGGACTTTGAAGTTTACAAACTTATCCATGAGAATGAAGATGAGATGCGAACCGCGGTAGAGAATGAAGATGAGATGCGAACCGCGGTAGAGGTGAAGAGCTTAGATGGTGCACAAACAAATTTGCCTAGTCCCATATGGATCATCCCAACCATATGCTTGGATGATTAA

Protein sequence

MRDETLGIVLFNPFTTYDEIEGILGHIIKAILTKDPSLYPNNYMVVAIFGTYKRLCLIRYWNVWKFEIENSDDESSSIFIYVKMVHTIEMRDIVMSYITVVLRILDFGEEQFEMVDFEVYKLIHENEDEMRTAVENEDEMRTAVEVKSLDGAQTNLPSPIWIIPTICLDD

Homology

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BLAST of CmaCh16G010260 vs. TrEMBL
Match: A0A0A0L2J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099610 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.9e-06
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1


Query: 1   MRDETLGIVLFNPF----------TTYDEIEGILGHIIKAILTKDPSLYPNNYMVVAIFG 59
           M ++TL I LFNPF          T +DE       I KAILTKDPS+YP  + +VAI+ 
Sbjct: 109 MLEDTLDITLFNPFNGNVIHIPPITIHDEPGYSPIAIHKAILTKDPSIYPQGFTIVAIYS 168

[Close]

BLAST of CmaCh16G010260 vs. NCBI nr
Match: gi|659096592|ref|XP_008449178.1| (PREDICTED: uncharacterized protein LOC103491129 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 1


Query: 1   MRDETLGIVLFNPFT-----------TYDEIEGILGHIIKAILTKDPSLYPNNYMVVAIF 60
           M +ET  + LFNPF+            +++ +    +I+KAILTKDPSLYPN+YMVVAI+
Sbjct: 110 MHEETFDVTLFNPFSGTVIRLPPLPKEHEDDDYYPWYILKAILTKDPSLYPNDYMVVAIY 169

Query: 61  GTYKRLCLIRYWN-VW-KFEIENSDDESSSIFIYV 83
           G   +LCLI   + +W K++I    D +    +YV
Sbjct: 170 GISTKLCLIEAKSKIWKKYDIPPGQDYNPFEDVYV 204

The following BLAST results are available for this feature:

BLAST of CmaCh16G010260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G010260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2J8_CUCSA	8.9e-06	45.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099610 PE=4 SV=1	[more]

BLAST of CmaCh16G010260 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G010260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096592\|ref\|XP_008449178.1\|	1.2e-08	41.05	PREDICTED: uncharacterized protein LOC103491129 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G010260.1	CmaCh16G010260.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G010260	MELO3C014014	Melon (DHL92) v3.5.1	cmameB290
CmaCh16G010260	CmoCh16G010650	Cucurbita moschata (Rifu)	cmacmoB323
CmaCh16G010260	Lsi07G013750	Bottle gourd (USVL1VR-Ls)	cmalsiB327
CmaCh16G010260	Cp4.1LG14g08370	Cucurbita pepo (Zucchini)	cmacpeB345
CmaCh16G010260	MELO3C014014.2	Melon (DHL92) v3.6.1	cmamedB343

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G010260	Cucurbita maxima (Rimu)	cmacmaB301
CmaCh16G010260	Cucurbita maxima (Rimu)	cmacmaB354
CmaCh16G010260	Cucumber (Gy14) v1	cgycmaB0888
CmaCh16G010260	Cucurbita moschata (Rifu)	cmacmoB341
CmaCh16G010260	Wild cucumber (PI 183967)	cmacpiB333
CmaCh16G010260	Cucumber (Chinese Long) v2	cmacuB327
CmaCh16G010260	Watermelon (Charleston Gray)	cmawcgB276
CmaCh16G010260	Watermelon (Charleston Gray)	cmawcgB285
CmaCh16G010260	Watermelon (97103) v1	cmawmB297
CmaCh16G010260	Cucurbita pepo (Zucchini)	cmacpeB365
CmaCh16G010260	Cucumber (Gy14) v2	cgybcmaB340
CmaCh16G010260	Silver-seed gourd	carcmaB1201
CmaCh16G010260	Silver-seed gourd	carcmaB1282
CmaCh16G010260	Cucumber (Chinese Long) v3	cmacucB0381
CmaCh16G010260	Watermelon (97103) v2	cmawmbB338