CmaCh16G010070 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G010070
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCma_Chr16 : 7756537 .. 7758349 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAACAAATAGGAGGCATTACATCGAAGGGTGAAGAAGAAGTACTCTACACAAGTGAAAGCCGGAGCAATAATAGGCCGTCTACAAAACGCGGATACAATGGTGACAAAACAAGAAGTCACCAAGGAATTGTACAACTAGGGAGAGCTTATAAGAACGGTAACAATAACTCTCAAGGGAAAAGATTTGAGGGCATTTACTACAATTGCGGGAAGAAGGGCCACATGTCCAAAGATTGTTGGTCTAAGAAAAAATCTGTCGAAAGCAATGTGACATCCTCCAACATGGAGATGGAGGAGGAATGGGATGCAGAGGTACTCTATGCTATAGAAGAAGATGAGCTAGCACTCATGGTGATGATGGGAGACCATATCGATTATGAGAATGATTGGATCATTGATTTAGGATACTCAAACCACATGATTGATGATCAAAGTGGTGCAGTGGAAGAGGGGTGGCCCTTAGAGAAGAGTATTACCAAGCCTTGAGCAAATTGAAGAAATTCTTTTGACGGAAGAGCAAACTGAAGAGATTCTTCCACAGAAGACGGGGAGGAAACTGTACACATTTGCTTCAGTGCTAATGTGGCTGAAGATTCAAGTGACACTAGTCTTGGTGAGTAATTGGTGAGTAAGAAGTGACTCAACCAAGCGAACCTAGTAAGAAATAATGAGCACCTCAACCACTAAGACAATTAGAAATGATCCAAAAGCCAAGTCTAGAGTATGTCAACACAACTATTGTAGAAGATGAAGTTAATATAAGCTAGAGATATATGAGGATGTATCACAAAACTCGGTTTGGCAGAAAGCGATTGAGGAAGAAATTATAGCCGTGGAGCAAAATCAAACTTGAGAACTAGTGCCAAGATCAAGAGATGTTAAATCTATCTTTTGCAAGTGGATTTACAAAATAAACTGTACCCCGAATGGATCAATTGTGAGATACAAAACTCAGACTGTAGATCCAGGGTTCTCTCAACAATATGAACTAGACTATGATGAAACGTTTAGTCTAGTGGCAAAGATCATTATCGTACAAGTTTCTCCAGTACTTACGGTAAATAAAGATTGAAAATTATGGTAGATGGATATGAATAATGCTTTATTGCATGGAGAGTTAAACAGAGAGTTCTACATGGACTAACTGGAGAAATTCGAAAATGAAGTTGGAGTCATTGATCAATATATGTAAAATCCGAAGAAGCCTCATTTGGATGCGGCTCGACGAACCTTGAGATATGTCAAAGGTACAATCAATTACGATCGTTTATACAAAAGAAGCGAAGACTAGAAGCTAGCTGGATATAGTGATGTCGACTATGCAGGAGACCACGATACCCGAAGATCAATCACTGGGTATGTGTTCAAGCTTGGTTTGAGAACAATTTTTTGGTGTAACAAAAGACAACTAACAATATCATTGTCAACTAGAGAAGCAGAGTATAGAGCAGCAGCTGGAGCAGCTCAGGAAAATACATGGTTAAAACTTTTGATGGAAGATTGGCACCAGAAAATTGAGTATCTAATACTTCATTACAACAATCAATCTGTGATTCGCCTAGCAGAAAATTCGGTGTTTCATGCTAGAACAAAACATGTAGAGGTACACTATCATTTCATTAGAGAGAAAGTCTTGAAGGAACAAATGGAGATGCAGCAGATCAAGACAGATGATCAAGTGACAGACTTGTTTACAAAAGGGCTGAATACTGCTAAACATGAGAGTTTTCGCTGTCAGCTCAACATGGTGCAACGAATGAGGACTAGTGCTGAGGGGAGTCTTAAAATATCATCACTAACCCAATAG

mRNA sequence

ATGGCTAAACAAATAGGAGGCATTACATCGAAGGGTGAAGAAGAAGTACTCTACACAAGTGAAAGCCGGAGCAATAATAGGCCGTCTACAAAACGCGGATACAATGGTGACAAAACAAGAAGTCACCAAGGAATTGTACAACTAGGGAGAGCTTATAAGAACGGTAACAATAACTCTCAAGGGAAAAGATTTGAGGGCATTTACTACAATTGCGGGAAGAAGGGCCACATGTCCAAAGATTGTTGGTCTAAGAAAAAATCTGTCGAAAGCAATGTGACATCCTCCAACATGGAGATGGAGGAGGAATGGGATGCAGAGGTACTCTATGCTATAGAAGAAGATGAGCTAGCACTCATGGTGATGATGGGAGACCATATCGATTATGAGAATGATTGGATCATTGATTTAGGATACTCAAACCACATGATTGATGATCAAAGTGGAGACCACGATACCCGAAGATCAATCACTGGGTATGTGTTCAAGCTTGGTTTGAGAACAATTTTTTGGTGTAACAAAAGACAACTAACAATATCATTGTCAACTAGAGAAGCAGAGTATAGAGCAGCAGCTGGAGCAGCTCAGGAAAATACATGGTTAAAACTTTTGATGGAAGATTGGCACCAGAAAATTGAGTATCTAATACTTCATTACAACAATCAATCTGTGATTCGCCTAGCAGAAAATTCGGTGTTTCATGCTAGAACAAAACATGTAGAGGTACACTATCATTTCATTAGAGAGAAAGTCTTGAAGGAACAAATGGAGATGCAGCAGATCAAGACAGATGATCAAGTGACAGACTTGTTTACAAAAGGGCTGAATACTGCTAAACATGAGAGTTTTCGCTGTCAGCTCAACATGGTGCAACGAATGAGGACTAGTGCTGAGGGGAGTCTTAAAATATCATCACTAACCCAATAG

Coding sequence (CDS)

ATGGCTAAACAAATAGGAGGCATTACATCGAAGGGTGAAGAAGAAGTACTCTACACAAGTGAAAGCCGGAGCAATAATAGGCCGTCTACAAAACGCGGATACAATGGTGACAAAACAAGAAGTCACCAAGGAATTGTACAACTAGGGAGAGCTTATAAGAACGGTAACAATAACTCTCAAGGGAAAAGATTTGAGGGCATTTACTACAATTGCGGGAAGAAGGGCCACATGTCCAAAGATTGTTGGTCTAAGAAAAAATCTGTCGAAAGCAATGTGACATCCTCCAACATGGAGATGGAGGAGGAATGGGATGCAGAGGTACTCTATGCTATAGAAGAAGATGAGCTAGCACTCATGGTGATGATGGGAGACCATATCGATTATGAGAATGATTGGATCATTGATTTAGGATACTCAAACCACATGATTGATGATCAAAGTGGAGACCACGATACCCGAAGATCAATCACTGGGTATGTGTTCAAGCTTGGTTTGAGAACAATTTTTTGGTGTAACAAAAGACAACTAACAATATCATTGTCAACTAGAGAAGCAGAGTATAGAGCAGCAGCTGGAGCAGCTCAGGAAAATACATGGTTAAAACTTTTGATGGAAGATTGGCACCAGAAAATTGAGTATCTAATACTTCATTACAACAATCAATCTGTGATTCGCCTAGCAGAAAATTCGGTGTTTCATGCTAGAACAAAACATGTAGAGGTACACTATCATTTCATTAGAGAGAAAGTCTTGAAGGAACAAATGGAGATGCAGCAGATCAAGACAGATGATCAAGTGACAGACTTGTTTACAAAAGGGCTGAATACTGCTAAACATGAGAGTTTTCGCTGTCAGCTCAACATGGTGCAACGAATGAGGACTAGTGCTGAGGGGAGTCTTAAAATATCATCACTAACCCAATAG

Protein sequence

MAKQIGGITSKGEEEVLYTSESRSNNRPSTKRGYNGDKTRSHQGIVQLGRAYKNGNNNSQGKRFEGIYYNCGKKGHMSKDCWSKKKSVESNVTSSNMEMEEEWDAEVLYAIEEDELALMVMMGDHIDYENDWIIDLGYSNHMIDDQSGDHDTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLMEDWHQKIEYLILHYNNQSVIRLAENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTDDQVTDLFTKGLNTAKHESFRCQLNMVQRMRTSAEGSLKISSLTQ
Homology
[Close]
BLAST of CmaCh16G010070 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.9e-22
Identity = 59/138 (42.75%), Postives = 89/138 (64.49%), Query Frame = 1 

Query: 145  DQSGDHDTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLM 204
            D +GD D R+S TGY+F      I W +K Q  ++LST EAEY AA    +E  WLK  +
Sbjct: 1182 DMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFL 1241

Query: 205  ED--WHQKIEYLILHYNNQSVIRLAENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKT 264
            ++   HQK EY +++ ++QS I L++NS++HARTKH++V YH+IRE V  E +++ +I T
Sbjct: 1242 QELGLHQK-EY-VVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKIST 1301

Query: 265  DDQVTDLFTKGLNTAKHE 281
            ++   D+ TK +   K E
Sbjct: 1302 NENPADMLTKVVPRNKFE 1317

[Close]
BLAST of CmaCh16G010070 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 102.4 bits (254), Expect = 8.7e-21
Identity = 62/169 (36.69%), Postives = 97/169 (57.40%), Query Frame = 1 

Query: 135  DLGYSNHMI----DDQSGDHDTRRSITGYVFKL-GLRTIFWCNKRQLTISLSTREAEYRA 194
            +L + N +I     D +G    R+S TGY+FK+     I W  KRQ +++ S+ EAEY A
Sbjct: 1241 NLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMA 1300

Query: 195  AAGAAQENTWLKLLMEDWHQKIEYLILHY-NNQSVIRLAENSVFHARTKHVEVHYHFIRE 254
               A +E  WLK L+   + K+E  I  Y +NQ  I +A N   H R KH+++ YHF RE
Sbjct: 1301 LFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFARE 1360

Query: 255  KVLKEQMEMQQIKTDDQVTDLFTKGLNTAKHESFRCQLNMVQRMRTSAE 298
            +V    + ++ I T++Q+ D+FTK L  A+    R +L ++Q  +++AE
Sbjct: 1361 QVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQDDQSNAE 1409

[Close]
BLAST of CmaCh16G010070 vs. TrEMBL
Match: A5AKW8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.2e-47
Identity = 101/155 (65.16%), Postives = 120/155 (77.42%), Query Frame = 1 

Query: 145  DQSGDHDTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLM 204
            D +GDHDTR S TGYVF LG   I WC+KRQ T+SLST EAEYRAAA A QE+ WL  LM
Sbjct: 1144 DYAGDHDTRXSTTGYVFMLGSGAISWCSKRQPTVSLSTTEAEYRAAAMATQESMWLIRLM 1203

Query: 205  EDWHQKIEYLI-LHYNNQSVIRLAENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTD 264
             D HQ ++Y + L+ +NQS +RLAEN VFHARTKHVEVHYHFIREKVLKE++E+ QIK++
Sbjct: 1204 NDLHQLVDYAVPLYCDNQSAVRLAENPVFHARTKHVEVHYHFIREKVLKEEVELNQIKSE 1263

Query: 265  DQVTDLFTKGLNTAKHESFRCQLNMVQRMRTSAEG 299
            DQV DLFTKGL+ +K ESF  QL MV+ +    EG
Sbjct: 1264 DQVADLFTKGLSGSKFESFCHQLGMVKILEADVEG 1298

[Close]
BLAST of CmaCh16G010070 vs. TrEMBL
Match: A5BGK7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007301 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.9e-47
Identity = 101/155 (65.16%), Postives = 121/155 (78.06%), Query Frame = 1 

Query: 145 DQSGDHDTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLM 204
           D +GDHDTRRS TGYVF LG   I WC+KRQ T+SL T EAEYRAAA AAQE+TWL  LM
Sbjct: 817 DYAGDHDTRRSTTGYVFMLGSGAISWCSKRQPTVSLLTTEAEYRAAAMAAQESTWLIRLM 876

Query: 205 EDWHQKIEYLI-LHYNNQSVIRLAENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTD 264
            D HQ ++Y + L+ +NQS +RLAEN VFHARTKHVEVHYHFIREKVL+E++E++QIK+ 
Sbjct: 877 NDLHQLVDYAVPLYCDNQSAVRLAENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKSK 936

Query: 265 DQVTDLFTKGLNTAKHESFRCQLNMVQRMRTSAEG 299
           DQV DLFTKGL+ +K E F  QL MV+ +    EG
Sbjct: 937 DQVADLFTKGLSGSKFECFCHQLGMVKILEADVEG 971

[Close]
BLAST of CmaCh16G010070 vs. TrEMBL
Match: A5BJX0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003097 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.8e-47
Identity = 122/251 (48.61%), Postives = 156/251 (62.15%), Query Frame = 1 

Query: 60   QGKRFEGIYYNCGKKG------HMSKDCWSKKKSVESNVTSSNMEMEEEWDAEVLYAIEE 119
            Q K F G+  +C  +G        +KD   K   +E  V S  M+  ++   EV+  I  
Sbjct: 810  QLKHFLGLEVDCTHEGIFLCQQKCAKDLLKKFGMLEFGVMSRYMQNPKKPHLEVVRRILR 869

Query: 120  D-----ELALMVMMGDHIDYENDWIIDLGYSNHMIDDQSGDHDTRRSITGYVFKLGLRTI 179
                  +  L+   G+           +GY +    D +GDHDTRRS TGYVF LG R I
Sbjct: 870  HVKSTIDYGLLYKKGEDCKL-------VGYCDA---DYTGDHDTRRSTTGYVFMLGSRAI 929

Query: 180  FWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLMEDWHQKIEYLI-LHYNNQSVIRLA 239
             WC+KRQ T+SLST EAEYRAAA A QE+TWL  LM D HQ ++Y + L+ +NQ  + LA
Sbjct: 930  SWCSKRQPTVSLSTTEAEYRAAAMATQESTWLIXLMNDLHQLVDYAVPLYCDNQLAVHLA 989

Query: 240  ENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTDDQVTDLFTKGLNTAKHESFRCQLN 299
            EN VFHARTKHVEVHYHFIREKVL+E++E++QIK+ DQV DLFTKGL+ +K ESF  QL 
Sbjct: 990  ENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKSGDQVADLFTKGLSGSKFESFCHQLG 1049

[Close]
BLAST of CmaCh16G010070 vs. TrEMBL
Match: A0A151SZC9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_015612 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.9e-41
Identity = 88/148 (59.46%), Postives = 109/148 (73.65%), Query Frame = 1 

Query: 145 DQSGDHDTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLM 204
           D +GDHDTRRS TGY+F +G   I WC+KRQ T+SLS+ E EYRA A AAQE +WL  L+
Sbjct: 214 DYTGDHDTRRSTTGYMFTMGSGAISWCSKRQSTVSLSSTEVEYRALAMAAQECSWLMQLL 273

Query: 205 EDWHQKIEYLI-LHYNNQSVIRLAENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTD 264
           +D  + ++Y + LH NNQS IRL EN VFHARTKHVEVHYHF+REKVL+  +EM+ I T+
Sbjct: 274 QDLRKLVDYPVTLHCNNQSAIRLVENPVFHARTKHVEVHYHFVREKVLQGDIEMKYINTE 333

Query: 265 DQVTDLFTKGLNTAKHESFRCQLNMVQR 292
            QV D+FTKGL+  K E+F  Q  M  R
Sbjct: 334 GQVADIFTKGLSATKFENFIKQFGMTTR 361

[Close]
BLAST of CmaCh16G010070 vs. TrEMBL
Match: I1IU64_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.0e-40
Identity = 90/148 (60.81%), Postives = 110/148 (74.32%), Query Frame = 1 

Query: 145  DQSGDHDTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLM 204
            D +GD DTRRS TGY+F LG   I WC+KRQ T++LS+ EAEYR+AA AAQE+TWLK LM
Sbjct: 1260 DYAGDCDTRRSTTGYLFNLGSGAITWCSKRQPTVALSSTEAEYRSAAAAAQESTWLKQLM 1319

Query: 205  EDWHQKIEYLI-LHYNNQSVIRLAENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTD 264
            ED HQ  +  + +  +N S IRLAEN VFHARTKH+EVHYH+IREKVLK ++EM   KT+
Sbjct: 1320 EDLHQTPKDQVWIFCDNLSTIRLAENPVFHARTKHIEVHYHYIREKVLKGEIEMVPTKTE 1379

Query: 265  DQVTDLFTKGLNTAKHESFRCQLNMVQR 292
            DQ  D+ TK LN +K E FR  L MV +
Sbjct: 1380 DQTADILTKSLNKSKFEKFREALGMVTK 1407

[Close]
BLAST of CmaCh16G010070 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 75.1 bits (183), Expect = 8.4e-14
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = 1 

Query: 151 DTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLMEDWHQK 210
           DTRRS  GY   LG   I W +K+Q  +S S+ EAEYRA + A  E  WL     +    
Sbjct: 455 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 514

Query: 211 I-EYLILHYNNQSVIRLAENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTDDQVTDL 270
           + +  +L  +N + I +A N+VFH RTKH+E   H +RE+ + +       +  D+  D 
Sbjct: 515 LSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQAYDE-QDG 574

Query: 271 FTKGLN 276
           FT+ L+
Sbjct: 575 FTEYLS 579

[Close]
BLAST of CmaCh16G010070 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 5.8e-07
Identity = 28/55 (50.91%), Postives = 32/55 (58.18%), Query Frame = 1 

Query: 145 DQSGDHDTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTW 200
           D +G   TRRS TG+   LG   I W  KRQ T+S S+ E EYRA A  A E TW
Sbjct: 171 DWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CmaCh16G010070 vs. NCBI nr
Match: gi|147794801|emb|CAN71427.1| (hypothetical protein VITISV_027864 [Vitis vinifera])

HSP 1 Score: 197.6 bits (501), Expect = 3.2e-47
Identity = 101/155 (65.16%), Postives = 120/155 (77.42%), Query Frame = 1 

Query: 145  DQSGDHDTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLM 204
            D +GDHDTR S TGYVF LG   I WC+KRQ T+SLST EAEYRAAA A QE+ WL  LM
Sbjct: 1144 DYAGDHDTRXSTTGYVFMLGSGAISWCSKRQPTVSLSTTEAEYRAAAMATQESMWLIRLM 1203

Query: 205  EDWHQKIEYLI-LHYNNQSVIRLAENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTD 264
             D HQ ++Y + L+ +NQS +RLAEN VFHARTKHVEVHYHFIREKVLKE++E+ QIK++
Sbjct: 1204 NDLHQLVDYAVPLYCDNQSAVRLAENPVFHARTKHVEVHYHFIREKVLKEEVELNQIKSE 1263

Query: 265  DQVTDLFTKGLNTAKHESFRCQLNMVQRMRTSAEG 299
            DQV DLFTKGL+ +K ESF  QL MV+ +    EG
Sbjct: 1264 DQVADLFTKGLSGSKFESFCHQLGMVKILEADVEG 1298

[Close]
BLAST of CmaCh16G010070 vs. NCBI nr
Match: gi|147798853|emb|CAN61340.1| (hypothetical protein VITISV_007301 [Vitis vinifera])

HSP 1 Score: 197.2 bits (500), Expect = 4.2e-47
Identity = 101/155 (65.16%), Postives = 121/155 (78.06%), Query Frame = 1 

Query: 145 DQSGDHDTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLM 204
           D +GDHDTRRS TGYVF LG   I WC+KRQ T+SL T EAEYRAAA AAQE+TWL  LM
Sbjct: 817 DYAGDHDTRRSTTGYVFMLGSGAISWCSKRQPTVSLLTTEAEYRAAAMAAQESTWLIRLM 876

Query: 205 EDWHQKIEYLI-LHYNNQSVIRLAENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTD 264
            D HQ ++Y + L+ +NQS +RLAEN VFHARTKHVEVHYHFIREKVL+E++E++QIK+ 
Sbjct: 877 NDLHQLVDYAVPLYCDNQSAVRLAENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKSK 936

Query: 265 DQVTDLFTKGLNTAKHESFRCQLNMVQRMRTSAEG 299
           DQV DLFTKGL+ +K E F  QL MV+ +    EG
Sbjct: 937 DQVADLFTKGLSGSKFECFCHQLGMVKILEADVEG 971

[Close]
BLAST of CmaCh16G010070 vs. NCBI nr
Match: gi|147783961|emb|CAN63563.1| (hypothetical protein VITISV_003097 [Vitis vinifera])

HSP 1 Score: 196.8 bits (499), Expect = 5.4e-47
Identity = 122/251 (48.61%), Postives = 156/251 (62.15%), Query Frame = 1 

Query: 60   QGKRFEGIYYNCGKKG------HMSKDCWSKKKSVESNVTSSNMEMEEEWDAEVLYAIEE 119
            Q K F G+  +C  +G        +KD   K   +E  V S  M+  ++   EV+  I  
Sbjct: 810  QLKHFLGLEVDCTHEGIFLCQQKCAKDLLKKFGMLEFGVMSRYMQNPKKPHLEVVRRILR 869

Query: 120  D-----ELALMVMMGDHIDYENDWIIDLGYSNHMIDDQSGDHDTRRSITGYVFKLGLRTI 179
                  +  L+   G+           +GY +    D +GDHDTRRS TGYVF LG R I
Sbjct: 870  HVKSTIDYGLLYKKGEDCKL-------VGYCDA---DYTGDHDTRRSTTGYVFMLGSRAI 929

Query: 180  FWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLMEDWHQKIEYLI-LHYNNQSVIRLA 239
             WC+KRQ T+SLST EAEYRAAA A QE+TWL  LM D HQ ++Y + L+ +NQ  + LA
Sbjct: 930  SWCSKRQPTVSLSTTEAEYRAAAMATQESTWLIXLMNDLHQLVDYAVPLYCDNQLAVHLA 989

Query: 240  ENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTDDQVTDLFTKGLNTAKHESFRCQLN 299
            EN VFHARTKHVEVHYHFIREKVL+E++E++QIK+ DQV DLFTKGL+ +K ESF  QL 
Sbjct: 990  ENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKSGDQVADLFTKGLSGSKFESFCHQLG 1049

[Close]
BLAST of CmaCh16G010070 vs. NCBI nr
Match: gi|658020190|ref|XP_008345472.1| (PREDICTED: uncharacterized protein LOC103408393 [Malus domestica])

HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43
Identity = 98/144 (68.06%), Postives = 112/144 (77.78%), Query Frame = 1 

Query: 145 DQSGDHDTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLM 204
           D +GDHDT RS TGYVFKLG  TI  C+KRQ T+SLST EAEYRAAA  AQEN WL  LM
Sbjct: 252 DYAGDHDTXRSTTGYVFKLGSGTISXCSKRQPTVSLSTTEAEYRAAAMXAQENAWLVQLM 311

Query: 205 EDWHQKIEYLI-LHYNNQSVIRLAENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTD 264
            D HQ ++Y + L+ +NQS IRLAEN VFHARTKHVEVHYHFIREKVL+E +EM+Q+KT+
Sbjct: 312 SDLHQPVDYSVPLYCDNQSAIRLAENXVFHARTKHVEVHYHFIREKVLQEXIEMRQVKTN 371

Query: 265 DQVTDLFTKGLNTAK---HESFRC 285
           DQV DLFTK L+T K   H S  C
Sbjct: 372 DQVADLFTKSLSTDKSPVHFSVGC 395

[Close]
BLAST of CmaCh16G010070 vs. NCBI nr
Match: gi|1012348973|gb|KYP60164.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 176.0 bits (445), Expect = 9.9e-41
Identity = 88/148 (59.46%), Postives = 109/148 (73.65%), Query Frame = 1 

Query: 145 DQSGDHDTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLM 204
           D +GDHDTRRS TGY+F +G   I WC+KRQ T+SLS+ E EYRA A AAQE +WL  L+
Sbjct: 214 DYTGDHDTRRSTTGYMFTMGSGAISWCSKRQSTVSLSSTEVEYRALAMAAQECSWLMQLL 273

Query: 205 EDWHQKIEYLI-LHYNNQSVIRLAENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTD 264
           +D  + ++Y + LH NNQS IRL EN VFHARTKHVEVHYHF+REKVL+  +EM+ I T+
Sbjct: 274 QDLRKLVDYPVTLHCNNQSAIRLVENPVFHARTKHVEVHYHFVREKVLQGDIEMKYINTE 333

Query: 265 DQVTDLFTKGLNTAKHESFRCQLNMVQR 292
            QV D+FTKGL+  K E+F  Q  M  R
Sbjct: 334 GQVADIFTKGLSATKFENFIKQFGMTTR 361

The following BLAST results are available for this feature:
BLAST of CmaCh16G010070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC7.9e-2242.75Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME8.7e-2136.69Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
BLAST of CmaCh16G010070 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AKW8_VITVI2.2e-4765.16Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1[more]
A5BGK7_VITVI2.9e-4765.16Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007301 PE=4 SV=1[more]
A5BJX0_VITVI3.8e-4748.61Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003097 PE=4 SV=1[more]
A0A151SZC9_CAJCA6.9e-4159.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
I1IU64_BRADI2.0e-4060.81Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1[more]
BLAST of CmaCh16G010070 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.18.4e-1436.51 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.15.8e-0750.91ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
BLAST of CmaCh16G010070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147794801|emb|CAN71427.1|3.2e-4765.16hypothetical protein VITISV_027864 [Vitis vinifera][more]
gi|147798853|emb|CAN61340.1|4.2e-4765.16hypothetical protein VITISV_007301 [Vitis vinifera][more]
gi|147783961|emb|CAN63563.1|5.4e-4748.61hypothetical protein VITISV_003097 [Vitis vinifera][more]
gi|658020190|ref|XP_008345472.1|1.3e-4368.06PREDICTED: uncharacterized protein LOC103408393 [Malus domestica][more]
gi|1012348973|gb|KYP60164.1|9.9e-4159.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G010070.1CmaCh16G010070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 69..84
score: 1.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 69..81
score: 1.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 69..81
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 49..89
score: 8.7
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 145..214
score: 8.0
NoneNo IPR availablePANTHERPTHR11439:SF164SUBFAMILY NOT NAMEDcoord: 145..214
score: 8.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G010070Cucumber (Gy14) v2cgybcmaB340
CmaCh16G010070Melon (DHL92) v3.6.1cmamedB343
CmaCh16G010070Silver-seed gourdcarcmaB0024
CmaCh16G010070Silver-seed gourdcarcmaB1201
CmaCh16G010070Cucumber (Chinese Long) v3cmacucB0381
CmaCh16G010070Watermelon (97103) v2cmawmbB338
CmaCh16G010070Wax gourdcmawgoB0419
CmaCh16G010070Cucurbita maxima (Rimu)cmacmaB354
CmaCh16G010070Cucumber (Gy14) v1cgycmaB0029
CmaCh16G010070Cucurbita moschata (Rifu)cmacmoB323
CmaCh16G010070Cucurbita moschata (Rifu)cmacmoB341
CmaCh16G010070Wild cucumber (PI 183967)cmacpiB333
CmaCh16G010070Cucumber (Chinese Long) v2cmacuB327
CmaCh16G010070Melon (DHL92) v3.5.1cmameB290
CmaCh16G010070Watermelon (Charleston Gray)cmawcgB277
CmaCh16G010070Watermelon (Charleston Gray)cmawcgB285
CmaCh16G010070Watermelon (97103) v1cmawmB294
CmaCh16G010070Cucurbita pepo (Zucchini)cmacpeB345
CmaCh16G010070Cucurbita pepo (Zucchini)cmacpeB365
CmaCh16G010070Bottle gourd (USVL1VR-Ls)cmalsiB327