CmaCh16G009630 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G009630
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionProtein TIC 20-v, chloroplastic
LocationCma_Chr16 : 7449484 .. 7450143 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACGCTTATCTTAAATCTCTCCCCCAAAACCCTCCGTTCTTCCTTCTTCCCCTCGCCATTTCCCTCTCTCTCAAACCCTAGAACTACGGCAACAACAACCCTCACTAACCAAATCAATTTCACCACTCTACGACGACGGCGACGACGACGCATCCTCACCGTCCGATCCTCCGGCGACCGCGACAACAACACCGCCGACGGCCCCGACCGCCTCATCTCCGCCATCTGCTACTTCTACCCGTTCTTCGACGGCGTCCAGTACGGCAAGTACGTTATCACTCAGTACGCTCCCTTTCAGGTTCTGATTCAGCCTTTGGTTCCCGCGATTCGAGTTTTCAAGAGCTTTCCATTCAACGGATTTCTGGTGTTTTTGACTCTATACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGATATGTTAGGTTCAATATTATGCAAGCCATTGTTCTTGATGTGCTTTTGATTTTCCCCGATCTTCTGGAGAGGAGCTTCAATCCGAGAGGGGGATTGGGGTTGGATTTGGTGATGAGCTTGGATAGCACTGTGTTTCTGTTTCTTTTGATTTGTTTGATTTATGGCTCATCTTCTTGCTTGTTGGGGCAGGTCCCTAGATTGCCCATTGTTGCTGATGCTGCTGATAGGCAAGTTATGTGA

mRNA sequence

ATGGCGACGCTTATCTTAAATCTCTCCCCCAAAACCCTCCGTTCTTCCTTCTTCCCCTCGCCATTTCCCTCTCTCTCAAACCCTAGAACTACGGCAACAACAACCCTCACTAACCAAATCAATTTCACCACTCTACGACGACGGCGACGACGACGCATCCTCACCGTCCGATCCTCCGGCGACCGCGACAACAACACCGCCGACGGCCCCGACCGCCTCATCTCCGCCATCTGCTACTTCTACCCGTTCTTCGACGGCGTCCAGTACGGCAAGTACGTTATCACTCAGTACGCTCCCTTTCAGGTTCTGATTCAGCCTTTGGTTCCCGCGATTCGAGTTTTCAAGAGCTTTCCATTCAACGGATTTCTGGTGTTTTTGACTCTATACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGATATGTTAGGTTCAATATTATGCAAGCCATTGTTCTTGATGTGCTTTTGATTTTCCCCGATCTTCTGGAGAGGAGCTTCAATCCGAGAGGGGGATTGGGGTTGGATTTGGTGATGAGCTTGGATAGCACTGTGTTTCTGTTTCTTTTGATTTGTTTGATTTATGGCTCATCTTCTTGCTTGTTGGGGCAGGTCCCTAGATTGCCCATTGTTGCTGATGCTGCTGATAGGCAAGTTATGTGA

Coding sequence (CDS)

ATGGCGACGCTTATCTTAAATCTCTCCCCCAAAACCCTCCGTTCTTCCTTCTTCCCCTCGCCATTTCCCTCTCTCTCAAACCCTAGAACTACGGCAACAACAACCCTCACTAACCAAATCAATTTCACCACTCTACGACGACGGCGACGACGACGCATCCTCACCGTCCGATCCTCCGGCGACCGCGACAACAACACCGCCGACGGCCCCGACCGCCTCATCTCCGCCATCTGCTACTTCTACCCGTTCTTCGACGGCGTCCAGTACGGCAAGTACGTTATCACTCAGTACGCTCCCTTTCAGGTTCTGATTCAGCCTTTGGTTCCCGCGATTCGAGTTTTCAAGAGCTTTCCATTCAACGGATTTCTGGTGTTTTTGACTCTATACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGATATGTTAGGTTCAATATTATGCAAGCCATTGTTCTTGATGTGCTTTTGATTTTCCCCGATCTTCTGGAGAGGAGCTTCAATCCGAGAGGGGGATTGGGGTTGGATTTGGTGATGAGCTTGGATAGCACTGTGTTTCTGTTTCTTTTGATTTGTTTGATTTATGGCTCATCTTCTTGCTTGTTGGGGCAGGTCCCTAGATTGCCCATTGTTGCTGATGCTGCTGATAGGCAAGTTATGTGA

Protein sequence

MATLILNLSPKTLRSSFFPSPFPSLSNPRTTATTTLTNQINFTTLRRRRRRRILTVRSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM
Homology
[Close]
BLAST of CmaCh16G009630 vs. Swiss-Prot
Match: TI205_ARATH (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 5.6e-70
Identity = 145/214 (67.76%), Postives = 166/214 (77.57%), Query Frame = 1 

Query: 15  SSFFPSPFPSLSNPRTTATTTLTNQ----INFTTL-----RRRRRRRILTVRSSGDRDNN 74
           S FF +P PSL     T T TLT +    +N  T        R R   L ++S GD   +
Sbjct: 5   SQFF-APLPSL-----TGTLTLTGRSFLPLNLDTQFPKPRLSRDRAATLVLQSKGD---D 64

Query: 75  TADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVF 134
           + D  DR+ISA+CYFYPFFDG+QYGK++ITQY PFQ+LIQPL PAIR FKSFPFNGFL+F
Sbjct: 65  SVDASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIF 124

Query: 135 LTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVF 194
           +TLYFVVVRNPNFSRYVRFN MQAIVLDVLLIFPDLLERSFNPR G GLD+VMSLDSTVF
Sbjct: 125 ITLYFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGFGLDVVMSLDSTVF 184

Query: 195 LFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 220
           LFLL+ LIYG S+CL G  PRLP+VA+AADRQV+
Sbjct: 185 LFLLVSLIYGFSACLFGLTPRLPLVAEAADRQVL 209

[Close]
BLAST of CmaCh16G009630 vs. Swiss-Prot
Match: TI202_ARATH (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-29
Identity = 80/197 (40.61%), Postives = 112/197 (56.85%), Query Frame = 1 

Query: 25  LSNPRTTATT-TLTNQINFTTLRRRRRRRILTVRSSGDRDNNTADGPDRLISAICYFYPF 84
           LS PR    + +      F+     RR   LT R+S           +R+IS   Y  PF
Sbjct: 16  LSAPRCRPLSLSFPGSSTFSIRPSSRRATALTTRAS----YTPTPATERVISIASYALPF 75

Query: 85  FDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSRYVR 144
           F+ +QYG+++  QY    +L +P+ P + +++S P+  F+ F  LY  VVRN +FSRYVR
Sbjct: 76  FNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFFGLYLGVVRNTSFSRYVR 135

Query: 145 FNIMQAIVLDVLLIFPDLLERSFNP--RGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLL 204
           FN MQA+ LDVLL  P LL R  +P   GG G+  +M   + VF+F  +C +YG  S LL
Sbjct: 136 FNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLL 195

Query: 205 GQVPRLPIVADAADRQV 219
           G+ P +P VADAA RQ+
Sbjct: 196 GKTPYIPFVADAAGRQL 208

[Close]
BLAST of CmaCh16G009630 vs. Swiss-Prot
Match: YC60L_SYNY3 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-22
Identity = 57/156 (36.54%), Postives = 92/156 (58.97%), Query Frame = 1 

Query: 64  NNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFL 123
           N+TADG DR  SA+ Y  P  D   +G +++ Q+   Q++  P++P ++ +  FPF  F+
Sbjct: 4   NSTADGKDRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFI 63

Query: 124 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLL-IFPDLLERSFNPRGGLGLDLVMSLDS 183
           +F+ L+  VVRN N S ++RFN MQAI++ +LL +F  ++     P  G GL +  +L +
Sbjct: 64  IFIVLFMAVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGL-VTETLYN 123

Query: 184 TVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQV 219
             FL  L C  +G    +LG+   +P ++DAA  QV
Sbjct: 124 FAFLGALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

[Close]
BLAST of CmaCh16G009630 vs. Swiss-Prot
Match: YCF60_PORPU (Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-07
Identity = 41/153 (26.80%), Postives = 82/153 (53.59%), Query Frame = 1 

Query: 72  RLISAICYFYPFFDGVQ-YGKYVITQY--APFQVLIQPLVPAIRVFKSFPFNGFLVFLTL 131
           RL+S I Y+ P F+G+Q +G+YV+  Y      +  + L+P +  + +    G + F  L
Sbjct: 47  RLVSIIPYYLPLFEGLQNFGQYVLPDYPVGAIPLYKKILLPMLIFYMNHAILGLVTFFAL 106

Query: 132 YFVVVRNPN---FSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVF 191
           Y+V+VRN +     + VRFN MQ+I+L ++      + R+F     +   + +++ + +F
Sbjct: 107 YYVLVRNKSPITVHQLVRFNSMQSILLFLVGSLFGAIFRAFPIEFRISF-IGLTVCNMMF 166

Query: 192 LFLLICLIYGSSSCLLGQVPRLPIVADAADRQV 219
            F+L  + Y     + G+   +P++++A   Q+
Sbjct: 167 WFILSTITYSIVKAIQGKYSNIPVISEAVRIQI 198

[Close]
BLAST of CmaCh16G009630 vs. TrEMBL
Match: A0A0A0L632_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047830 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.5e-90
Identity = 188/223 (84.30%), Postives = 194/223 (87.00%), Query Frame = 1 

Query: 1   MATLILNLSPKTLRSSFFPSPFPSLSNPRTTATTTLTNQINFTTLRRRR---RRRILTVR 60
           MA LILNLSPKT  S FFPS    LSNP+TT        +NFTT   RR   R RILTVR
Sbjct: 1   MAFLILNLSPKTPHSPFFPS----LSNPKTTT-------LNFTTTLPRRWLARPRILTVR 60

Query: 61  SSGD-RDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKS 120
           S+GD  +NN+AD PDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKS
Sbjct: 61  STGDDNNNNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKS 120

Query: 121 FPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 180
           FP N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL
Sbjct: 121 FPLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 180

Query: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 220
           VMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 212

[Close]
BLAST of CmaCh16G009630 vs. TrEMBL
Match: A0A151U2F4_CAJCA (Ycf60-like protein OS=Cajanus cajan GN=KK1_006098 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.6e-74
Identity = 157/220 (71.36%), Postives = 175/220 (79.55%), Query Frame = 1 

Query: 1   MATLILNLSPKTLRSSFFPS-PFPSLSNPRTTATTTLTNQINFTTLRRRRRRRILTVRSS 60
           +  +  +LS K L+S+F  S P PSL          LT  I    LR+  + R L V  S
Sbjct: 7   LCPVAFSLSQKPLQSTFLQSSPNPSL----------LTLSILPKKLRKAHQLRSLIVAKS 66

Query: 61  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 120
              D+  AD PDRLISA+CYFYPFFDG+QYGKYVITQ+ P Q ++QPLVPAIRVFKSFPF
Sbjct: 67  NGSDS--ADVPDRLISALCYFYPFFDGIQYGKYVITQFYPVQAIVQPLVPAIRVFKSFPF 126

Query: 121 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 180
           NGFLVFLTLYFVVVRNPNFSRYVRFN MQAIVLDVLLIFPDLLER FNPR GLGLDL+MS
Sbjct: 127 NGFLVFLTLYFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERGFNPRDGLGLDLLMS 186

Query: 181 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 220
           LDSTVFLFLL+CLIYGSSSCLLGQ+PRLPIVA+AADRQV+
Sbjct: 187 LDSTVFLFLLVCLIYGSSSCLLGQIPRLPIVAEAADRQVL 214

[Close]
BLAST of CmaCh16G009630 vs. TrEMBL
Match: A0A067KSV0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01028 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.2e-73
Identity = 146/186 (78.49%), Postives = 166/186 (89.25%), Query Frame = 1 

Query: 35  TLTNQIN-FTTLRRRRRRRILTVRSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYV 94
           +L +QI    TL  + +R I+T +S+GD   ++AD  DR+ISA+CYFYPFFDG+QYGKYV
Sbjct: 64  SLASQIKTHKTLSNKPKRPIVTAKSNGD---DSADAGDRIISAVCYFYPFFDGIQYGKYV 123

Query: 95  ITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLD 154
           ITQ++P Q LIQPLVPAIRVFKSFP NGFLVFLTLYFVVVRNPNFSRYVRFN MQAIVLD
Sbjct: 124 ITQFSPIQTLIQPLVPAIRVFKSFPLNGFLVFLTLYFVVVRNPNFSRYVRFNTMQAIVLD 183

Query: 155 VLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADA 214
           VLLIFPDLLERSFNPR GLGLDL+MSLDSTVFL+LL+CLIYGSS+CLLGQVPRLPIVA+A
Sbjct: 184 VLLIFPDLLERSFNPRDGLGLDLMMSLDSTVFLYLLVCLIYGSSACLLGQVPRLPIVAEA 243

Query: 215 ADRQVM 220
           ADRQV+
Sbjct: 244 ADRQVL 246

[Close]
BLAST of CmaCh16G009630 vs. TrEMBL
Match: F6I556_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g00520 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 8.4e-73
Identity = 154/219 (70.32%), Postives = 174/219 (79.45%), Query Frame = 1 

Query: 1   MATLILNLSPKTLRSSFFPSPFPSLSNPRTTATTTLTNQINFTTLRRRRRRRILTVRSSG 60
           M++L+  LS     S  FP   PSL         TLT ++     + + RRR +  +S G
Sbjct: 3   MSSLLSPLSSTLQSSPLFPIRHPSL--------LTLTTKLRCP--KAQERRRSIAAQSKG 62

Query: 61  DRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFN 120
              +N+AD PDRLISA+CYFYPFFDG+QYGKYV+TQ+ P Q+LIQPL PAI+VFKSFPFN
Sbjct: 63  ---SNSADPPDRLISAVCYFYPFFDGIQYGKYVLTQFTPIQLLIQPLFPAIKVFKSFPFN 122

Query: 121 GFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSL 180
           GFLVFLTLYFVVVRN NFSRYVRFN MQAIVLDVLLIFPDLLERSFNPR GLGLD VMSL
Sbjct: 123 GFLVFLTLYFVVVRNRNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGLGLDFVMSL 182

Query: 181 DSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 220
           DSTVFLFLL+ LIYGSSSCLLGQVPRLPIVA+AADRQV+
Sbjct: 183 DSTVFLFLLVSLIYGSSSCLLGQVPRLPIVAEAADRQVL 208

[Close]
BLAST of CmaCh16G009630 vs. TrEMBL
Match: W9R1D7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018220 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 154/219 (70.32%), Postives = 172/219 (78.54%), Query Frame = 1 

Query: 1   MATLILNLSPKTLRSSFFPSPFPSLSNPRTTATTTLTNQINFTTLRRRRRRRILTVRSSG 60
           ++ L LN   KT  S+F  SP                N   F +L + R R  +  +S G
Sbjct: 7   LSPLPLNFPHKTHHSNFLFSP----------------NHQTFLSLTKPRPRTQIISQSKG 66

Query: 61  DRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFN 120
              +N+AD PDR+ISAICYFYPFFDGVQYGKYVITQ++P Q LIQPLVPAIRVFKSFPFN
Sbjct: 67  ---SNSADPPDRIISAICYFYPFFDGVQYGKYVITQFSPIQALIQPLVPAIRVFKSFPFN 126

Query: 121 GFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSL 180
           GFLVFLTLYFVVVRN  FSRYVRFN MQAIVLDVLLIFPDLLERSFNPR GLGLDL+MSL
Sbjct: 127 GFLVFLTLYFVVVRNSKFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGLGLDLMMSL 186

Query: 181 DSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 220
           DSTVFLFLL+CLIYGSSSCLLGQ+PRLPIVA+AA+RQV+
Sbjct: 187 DSTVFLFLLVCLIYGSSSCLLGQLPRLPIVAEAAERQVL 206

[Close]
BLAST of CmaCh16G009630 vs. TAIR10
Match: AT5G55710.1 (AT5G55710.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 265.4 bits (677), Expect = 3.1e-71
Identity = 145/214 (67.76%), Postives = 166/214 (77.57%), Query Frame = 1 

Query: 15  SSFFPSPFPSLSNPRTTATTTLTNQ----INFTTL-----RRRRRRRILTVRSSGDRDNN 74
           S FF +P PSL     T T TLT +    +N  T        R R   L ++S GD   +
Sbjct: 5   SQFF-APLPSL-----TGTLTLTGRSFLPLNLDTQFPKPRLSRDRAATLVLQSKGD---D 64

Query: 75  TADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVF 134
           + D  DR+ISA+CYFYPFFDG+QYGK++ITQY PFQ+LIQPL PAIR FKSFPFNGFL+F
Sbjct: 65  SVDASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIF 124

Query: 135 LTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVF 194
           +TLYFVVVRNPNFSRYVRFN MQAIVLDVLLIFPDLLERSFNPR G GLD+VMSLDSTVF
Sbjct: 125 ITLYFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGFGLDVVMSLDSTVF 184

Query: 195 LFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 220
           LFLL+ LIYG S+CL G  PRLP+VA+AADRQV+
Sbjct: 185 LFLLVSLIYGFSACLFGLTPRLPLVAEAADRQVL 209

[Close]
BLAST of CmaCh16G009630 vs. TAIR10
Match: AT2G47840.1 (AT2G47840.1 Uncharacterised conserved protein ycf60)

HSP 1 Score: 131.0 bits (328), Expect = 9.2e-31
Identity = 80/197 (40.61%), Postives = 112/197 (56.85%), Query Frame = 1 

Query: 25  LSNPRTTATT-TLTNQINFTTLRRRRRRRILTVRSSGDRDNNTADGPDRLISAICYFYPF 84
           LS PR    + +      F+     RR   LT R+S           +R+IS   Y  PF
Sbjct: 16  LSAPRCRPLSLSFPGSSTFSIRPSSRRATALTTRAS----YTPTPATERVISIASYALPF 75

Query: 85  FDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSRYVR 144
           F+ +QYG+++  QY    +L +P+ P + +++S P+  F+ F  LY  VVRN +FSRYVR
Sbjct: 76  FNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFFGLYLGVVRNTSFSRYVR 135

Query: 145 FNIMQAIVLDVLLIFPDLLERSFNP--RGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLL 204
           FN MQA+ LDVLL  P LL R  +P   GG G+  +M   + VF+F  +C +YG  S LL
Sbjct: 136 FNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLL 195

Query: 205 GQVPRLPIVADAADRQV 219
           G+ P +P VADAA RQ+
Sbjct: 196 GKTPYIPFVADAAGRQL 208

[Close]
BLAST of CmaCh16G009630 vs. NCBI nr
Match: gi|659096325|ref|XP_008449034.1| (PREDICTED: protein TIC 20-v, chloroplastic [Cucumis melo])

HSP 1 Score: 368.6 bits (945), Expect = 7.5e-99
Identity = 194/222 (87.39%), Postives = 202/222 (90.99%), Query Frame = 1 

Query: 1   MATLILNLSPKTLRSSFFPSPFPSLSNPRTTATTTLTNQINFTTLRRRR---RRRILTVR 60
           MA LILNLSPKTL SSFFPSPFP+LSNP+TT        +NFTT  RRR   RRRI TVR
Sbjct: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTT-------LNFTTTLRRRGRGRRRIFTVR 60

Query: 61  SSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSF 120
           S+GD +NN+ADGPDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKSF
Sbjct: 61  STGDNNNNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSF 120

Query: 121 PFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLV 180
           P N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDLV
Sbjct: 121 PLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLV 180

Query: 181 MSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 220
           MSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 181 MSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215

[Close]
BLAST of CmaCh16G009630 vs. NCBI nr
Match: gi|449461063|ref|XP_004148263.1| (PREDICTED: protein TIC 20-v, chloroplastic [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 2.2e-90
Identity = 188/223 (84.30%), Postives = 194/223 (87.00%), Query Frame = 1 

Query: 1   MATLILNLSPKTLRSSFFPSPFPSLSNPRTTATTTLTNQINFTTLRRRR---RRRILTVR 60
           MA LILNLSPKT  S FFPS    LSNP+TT        +NFTT   RR   R RILTVR
Sbjct: 1   MAFLILNLSPKTPHSPFFPS----LSNPKTTT-------LNFTTTLPRRWLARPRILTVR 60

Query: 61  SSGD-RDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKS 120
           S+GD  +NN+AD PDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKS
Sbjct: 61  STGDDNNNNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKS 120

Query: 121 FPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 180
           FP N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL
Sbjct: 121 FPLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 180

Query: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 220
           VMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 212

[Close]
BLAST of CmaCh16G009630 vs. NCBI nr
Match: gi|1012362290|gb|KYP73473.1| (Ycf60-like protein [Cajanus cajan])

HSP 1 Score: 285.0 bits (728), Expect = 1.1e-73
Identity = 157/220 (71.36%), Postives = 175/220 (79.55%), Query Frame = 1 

Query: 1   MATLILNLSPKTLRSSFFPS-PFPSLSNPRTTATTTLTNQINFTTLRRRRRRRILTVRSS 60
           +  +  +LS K L+S+F  S P PSL          LT  I    LR+  + R L V  S
Sbjct: 7   LCPVAFSLSQKPLQSTFLQSSPNPSL----------LTLSILPKKLRKAHQLRSLIVAKS 66

Query: 61  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 120
              D+  AD PDRLISA+CYFYPFFDG+QYGKYVITQ+ P Q ++QPLVPAIRVFKSFPF
Sbjct: 67  NGSDS--ADVPDRLISALCYFYPFFDGIQYGKYVITQFYPVQAIVQPLVPAIRVFKSFPF 126

Query: 121 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 180
           NGFLVFLTLYFVVVRNPNFSRYVRFN MQAIVLDVLLIFPDLLER FNPR GLGLDL+MS
Sbjct: 127 NGFLVFLTLYFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERGFNPRDGLGLDLLMS 186

Query: 181 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 220
           LDSTVFLFLL+CLIYGSSSCLLGQ+PRLPIVA+AADRQV+
Sbjct: 187 LDSTVFLFLLVCLIYGSSSCLLGQIPRLPIVAEAADRQVL 214

[Close]
BLAST of CmaCh16G009630 vs. NCBI nr
Match: gi|643732079|gb|KDP39271.1| (hypothetical protein JCGZ_01028 [Jatropha curcas])

HSP 1 Score: 283.5 bits (724), Expect = 3.2e-73
Identity = 146/186 (78.49%), Postives = 166/186 (89.25%), Query Frame = 1 

Query: 35  TLTNQIN-FTTLRRRRRRRILTVRSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYV 94
           +L +QI    TL  + +R I+T +S+GD   ++AD  DR+ISA+CYFYPFFDG+QYGKYV
Sbjct: 64  SLASQIKTHKTLSNKPKRPIVTAKSNGD---DSADAGDRIISAVCYFYPFFDGIQYGKYV 123

Query: 95  ITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLD 154
           ITQ++P Q LIQPLVPAIRVFKSFP NGFLVFLTLYFVVVRNPNFSRYVRFN MQAIVLD
Sbjct: 124 ITQFSPIQTLIQPLVPAIRVFKSFPLNGFLVFLTLYFVVVRNPNFSRYVRFNTMQAIVLD 183

Query: 155 VLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADA 214
           VLLIFPDLLERSFNPR GLGLDL+MSLDSTVFL+LL+CLIYGSS+CLLGQVPRLPIVA+A
Sbjct: 184 VLLIFPDLLERSFNPRDGLGLDLMMSLDSTVFLYLLVCLIYGSSACLLGQVPRLPIVAEA 243

Query: 215 ADRQVM 220
           ADRQV+
Sbjct: 244 ADRQVL 246

[Close]
BLAST of CmaCh16G009630 vs. NCBI nr
Match: gi|802588662|ref|XP_012071009.1| (PREDICTED: protein TIC 20-v, chloroplastic [Jatropha curcas])

HSP 1 Score: 283.5 bits (724), Expect = 3.2e-73
Identity = 146/186 (78.49%), Postives = 166/186 (89.25%), Query Frame = 1 

Query: 35  TLTNQIN-FTTLRRRRRRRILTVRSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYV 94
           +L +QI    TL  + +R I+T +S+GD   ++AD  DR+ISA+CYFYPFFDG+QYGKYV
Sbjct: 29  SLASQIKTHKTLSNKPKRPIVTAKSNGD---DSADAGDRIISAVCYFYPFFDGIQYGKYV 88

Query: 95  ITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLD 154
           ITQ++P Q LIQPLVPAIRVFKSFP NGFLVFLTLYFVVVRNPNFSRYVRFN MQAIVLD
Sbjct: 89  ITQFSPIQTLIQPLVPAIRVFKSFPLNGFLVFLTLYFVVVRNPNFSRYVRFNTMQAIVLD 148

Query: 155 VLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADA 214
           VLLIFPDLLERSFNPR GLGLDL+MSLDSTVFL+LL+CLIYGSS+CLLGQVPRLPIVA+A
Sbjct: 149 VLLIFPDLLERSFNPRDGLGLDLMMSLDSTVFLYLLVCLIYGSSACLLGQVPRLPIVAEA 208

Query: 215 ADRQVM 220
           ADRQV+
Sbjct: 209 ADRQVL 211

The following BLAST results are available for this feature:
BLAST of CmaCh16G009630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TI205_ARATH5.6e-7067.76Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1[more]
TI202_ARATH1.6e-2940.61Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1[more]
YC60L_SYNY31.9e-2236.54Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 ... [more]
YCF60_PORPU1.8e-0726.80Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1[more]
BLAST of CmaCh16G009630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L632_CUCSA1.5e-9084.30Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047830 PE=4 SV=1[more]
A0A151U2F4_CAJCA7.6e-7471.36Ycf60-like protein OS=Cajanus cajan GN=KK1_006098 PE=4 SV=1[more]
A0A067KSV0_JATCU2.2e-7378.49Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01028 PE=4 SV=1[more]
F6I556_VITVI8.4e-7370.32Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g00520 PE=4 SV=... [more]
W9R1D7_9ROSA1.1e-7270.32Uncharacterized protein OS=Morus notabilis GN=L484_018220 PE=4 SV=1[more]
BLAST of CmaCh16G009630 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G55710.13.1e-7167.76 FUNCTIONS IN: molecular_function unknown[more]
AT2G47840.19.2e-3140.61 Uncharacterised conserved protein ycf60[more]
BLAST of CmaCh16G009630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096325|ref|XP_008449034.1|7.5e-9987.39PREDICTED: protein TIC 20-v, chloroplastic [Cucumis melo][more]
gi|449461063|ref|XP_004148263.1|2.2e-9084.30PREDICTED: protein TIC 20-v, chloroplastic [Cucumis sativus][more]
gi|1012362290|gb|KYP73473.1|1.1e-7371.36Ycf60-like protein [Cajanus cajan][more]
gi|643732079|gb|KDP39271.1|3.2e-7378.49hypothetical protein JCGZ_01028 [Jatropha curcas][more]
gi|802588662|ref|XP_012071009.1|3.2e-7378.49PREDICTED: protein TIC 20-v, chloroplastic [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G009630.1CmaCh16G009630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 72..214
score: 9.9
NoneNo IPR availablePANTHERPTHR33510FAMILY NOT NAMEDcoord: 20..219
score: 1.5
NoneNo IPR availablePANTHERPTHR33510:SF5PROTEIN TIC 20-V, CHLOROPLASTICcoord: 20..219
score: 1.5