CmaCh16G009350 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G009350
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pectin lyase-like superfamily protein, putative
Location	Cma_Chr16 : 7181945 .. 7183366 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATGTTTAGGGTTTTTTATCATCTTACGTTCCATTCCTAAAGGTAATTCCAATCTAAAGAGTTCAATATCATCCAATTTGGTGCAGTAATGGATGAAAAAACCGATGGTACGAAGGTGAAAGTTTTAAACTCAATACAAACAACCTTTTGTTATGTACTTACAATATTGTTCGATAACATTTTTTTTTTTTAAATAGAATCTTTAGAAGCATTATTTTAAAAATACCATTTTCGAAATGGAATACAATTTTTGGAAACATGACAAGCCTAGTTTTTTTTTAATATCTATTTCATGTCTTCAAATATCCAAATCAAATTTTTTAAACTAAAAAAAATATTTTTTTGTTGTTTTTGGCTTATTCTTCCTAATAAATATCTAAAAGTAAATTTAACATCAAAATTGTGCAAATTTAATTTGAAACTACCTTTGGTATTACTTTATTGTAAATTAAGAAGTACATTAAAAAATTTAAGCTATTTGGTTGAAAGTAGATAGATAAAAGATTACTTGGTTTGTATAGGCATTATGAGGCATGGAGAGAAGCTTGTGGACATAACGGACATGGTGTAGTTTTAGTACCAGCGGAGATTCTTGGTTTTGCCGTGGGTGCTTGAAGGTCCATGCAAAGTATCCATTGGTCTACTTATTCATGGTGAACTGTTGGCACCTGTCAGTAAGAATTTCGCCACTGGTGTATACTGGCTGAGTATCTCCAAAGTCGACAACTTGTTCGTTGACGGTTCTGGCAGCTTGAATGGCGGCGGTTCTTCAGCTTGGCCTTCCGACACTTCTAACCGCCCAGTTGTAAGTCCATTTTTAGGTTTGAGTGATAAAAAAGAAATTCATTTTGTTAGGTTGATAGTTAAATGATGCTATCATTTTACATTTAAAAGTACACAAAAATATACATATGTATAATCTAACGATTGATTCAATGTAGTCGATGAAACTTTCTAGTGTCAACACTGCGAGAATTTCAAAGATAACATCGTCCAATAGAAAACTCTTCCATTTTGGTGTGCATGGATGTCATGATATCACATTTGATCACGTTACAGTGATAGCTCCAGCAGATAGCCCCAATACAGATGAAATTCACGTTTTCAAGTCAAGTGGTATCAATATTATGCATTCAGTGATTCGCAGTGGAGACGATTGCATCTCTTTAGGCCCTGGAAGTAAATTCATCAACATAACAAATGTCCAGTGTGGTCCAGGTCATGGAATTAGTATCGGTAGCCTCGGAAAGTACCCTAATGAAGAAGATGTCTCTGAAGTCACAATAAGAGACTCCACACTTGTTGGCACAGACAATGGTGTGAGGATCAAAACATGGTCATTTTCATTTTCTAATTTTGTTAGCGATCGCTTTTCTCAATCTCGAAATGAAGGATGTAAAAAATCCTATCATCATTGA

mRNA sequence

ATGAGATGTTTAGGGTTTTTTATCATCTTACGTTCCATTCCTAAAGGTCCATGCAAAGTATCCATTGGTCTACTTATTCATGGTGAACTGTTGGCACCTGTCAGTAAGAATTTCGCCACTGGTGTATACTGGCTGAGTATCTCCAAAGTCGACAACTTGTTCGTTGACGGTTCTGGCAGCTTGAATGGCGGCGGTTCTTCAGCTTGGCCTTCCGACACTTCTAACCGCCCAGTTTCGATGAAACTTTCTAGTGTCAACACTGCGAGAATTTCAAAGATAACATCGTCCAATAGAAAACTCTTCCATTTTGGTGTGCATGGATGTCATGATATCACATTTGATCACGTTACAGTGATAGCTCCAGCAGATAGCCCCAATACAGATGAAATTCACGTTTTCAAGTCAAGTGGTATCAATATTATGCATTCAGTGATTCGCAGTGGAGACGATTGCATCTCTTTAGGCCCTGGAAGTAAATTCATCAACATAACAAATGTCCAGTGTGGTCCAGGTCATGGAATTAGTATCGGTAGCCTCGGAAAGTACCCTAATGAAGAAGATGTCTCTGAAGTCACAATAAGAGACTCCACACTTGTTGGCACAGACAATGGTGTGAGGATCAAAACATGGTCATTTTCATTTTCTAATTTTGTTAGCGATCGCTTTTCTCAATCTCGAAATGAAGGATGTAAAAAATCCTATCATCATTGA

Coding sequence (CDS)

ATGAGATGTTTAGGGTTTTTTATCATCTTACGTTCCATTCCTAAAGGTCCATGCAAAGTATCCATTGGTCTACTTATTCATGGTGAACTGTTGGCACCTGTCAGTAAGAATTTCGCCACTGGTGTATACTGGCTGAGTATCTCCAAAGTCGACAACTTGTTCGTTGACGGTTCTGGCAGCTTGAATGGCGGCGGTTCTTCAGCTTGGCCTTCCGACACTTCTAACCGCCCAGTTTCGATGAAACTTTCTAGTGTCAACACTGCGAGAATTTCAAAGATAACATCGTCCAATAGAAAACTCTTCCATTTTGGTGTGCATGGATGTCATGATATCACATTTGATCACGTTACAGTGATAGCTCCAGCAGATAGCCCCAATACAGATGAAATTCACGTTTTCAAGTCAAGTGGTATCAATATTATGCATTCAGTGATTCGCAGTGGAGACGATTGCATCTCTTTAGGCCCTGGAAGTAAATTCATCAACATAACAAATGTCCAGTGTGGTCCAGGTCATGGAATTAGTATCGGTAGCCTCGGAAAGTACCCTAATGAAGAAGATGTCTCTGAAGTCACAATAAGAGACTCCACACTTGTTGGCACAGACAATGGTGTGAGGATCAAAACATGGTCATTTTCATTTTCTAATTTTGTTAGCGATCGCTTTTCTCAATCTCGAAATGAAGGATGTAAAAAATCCTATCATCATTGA

Protein sequence

MRCLGFFIILRSIPKGPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNGGGSSAWPSDTSNRPVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADSPNTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPNEEDVSEVTIRDSTLVGTDNGVRIKTWSFSFSNFVSDRFSQSRNEGCKKSYHH

Homology

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BLAST of CmaCh16G009350 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.5e-47
Identity = 92/204 (45.10%), Postives = 135/204 (66.18%), Query Frame = 1


Query: 15  KGPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNGGGSSAWPSDT- 74
           +GPCK SIGL + G L AP   +   G+ W++++K+D L + G G  +G G SAW  +  
Sbjct: 37  EGPCKSSIGLQLQGTLKAPADPSKIKGLGWINLNKIDLLTIFGGGVFDGQGKSAWVQNDC 96

Query: 75  -SNRPV------SMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADSPN 134
             N P+      +++L +V  + +  +T+ + K FH  V GC ++TF+   + A   S N
Sbjct: 97  HKNGPICKTLSMNLRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSIN 156

Query: 135 TDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPNEE 194
           TD IH+ +S G+NI+++ I++GDDCISLG GSK INITN+ CGPGHGIS+GSLG+Y NEE
Sbjct: 157 TDGIHIGRSDGVNIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEE 216

Query: 195 DVSEVTIRDSTLVGTDNGVRIKTW 211
            V  + +++ T+ G+ NGVRIKTW
Sbjct: 217 SVVGIYVKNCTITGSQNGVRIKTW 240

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BLAST of CmaCh16G009350 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 7.1e-47
Identity = 97/204 (47.55%), Postives = 130/204 (63.73%), Query Frame = 1


Query: 15  KGPCKVS-IGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNGGGSSAWPSDT 74
           +GPCK S IG  I G + AP   +      W+S  ++D L V G+G+L+G G +AW  + 
Sbjct: 58  QGPCKGSKIGFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNN 117

Query: 75  SNRPVSMKLSSVNT-------ARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADSPN 134
            ++  + K +++N        A +  ITS N K+FH  V  C DITF HVTV AP  S N
Sbjct: 118 CDKNPNCKHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSIN 177

Query: 135 TDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPNEE 194
           TD IHV  S G+ I ++ I +GDDCIS+GPGS+ + IT V CGPGHGISIGSLG+Y NE+
Sbjct: 178 TDGIHVGISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEK 237

Query: 195 DVSEVTIRDSTLVGTDNGVRIKTW 211
           +V  +T++  T  GT NGVR+KTW
Sbjct: 238 EVRGITVKGCTFSGTMNGVRVKTW 261

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BLAST of CmaCh16G009350 vs. Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.9e-45
Identity = 91/203 (44.83%), Postives = 126/203 (62.07%), Query Frame = 1


Query: 16  GPCKVSIGLLIHGELLAPVS-KNFATGVYWLSISKVDNLFVDGSGSLNGGGSSAWPSDTS 75
           GPCK  + + ++G LLA      +     W+ I +VDNL + G G L+G G + W  ++ 
Sbjct: 92  GPCKGDVTIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSC 151

Query: 76  NR-------PVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADSPNT 135
            +       P S+ +  VN   +S IT  N K FH  ++ C D+    V V AP DSPNT
Sbjct: 152 VKKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNT 211

Query: 136 DEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPNEED 195
           D IH+  SSG+ I ++VI  GDDCIS+GPG+  +NIT V CGPGHGISIGSLG+Y +E+D
Sbjct: 212 DGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKD 271

Query: 196 VSEVTIRDSTLVGTDNGVRIKTW 211
           V+++ ++D TL  T NGVRIK +
Sbjct: 272 VTDINVKDCTLKKTANGVRIKAY 294

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BLAST of CmaCh16G009350 vs. Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.7e-45
Identity = 93/214 (43.46%), Postives = 131/214 (61.21%), Query Frame = 1


Query: 5   GFFIILRSIPKGPCKVSIGLLIHGELLAPVS-KNFATGVYWLSISKVDNLFVDGSGSLNG 64
           G F++ +    GPCK  + + + G LLA      +     W+ I +VDNL + G G+L+G
Sbjct: 81  GDFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDG 140

Query: 65  GGSSAWPSDTSNR-------PVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHV 124
            G + W  ++  +       P S+ +  VN   +S +T  N K FH  ++ C D+    V
Sbjct: 141 QGPAVWSKNSCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDV 200

Query: 125 TVIAPADSPNTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISI 184
           TV AP DSPNTD IH+  SSGI I ++VI  GDDCIS+GPG+  +NIT V CGPGHGISI
Sbjct: 201 TVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISI 260

Query: 185 GSLGKYPNEEDVSEVTIRDSTLVGTDNGVRIKTW 211
           GSLG+Y +E+DV+++ ++D TL  T  GVRIK +
Sbjct: 261 GSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAY 294

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BLAST of CmaCh16G009350 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.7e-45
Identity = 93/208 (44.71%), Postives = 126/208 (60.58%), Query Frame = 1


Query: 15  KGPCKVSIGLLIHGELLAPVSKNFATGV-YWLSISKVDNLFVDGSGSLNGGGS------- 74
           KGPCK  I L + G + AP   +   G   W     +D+L + G G  +G G+       
Sbjct: 73  KGPCKAPIELQVDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSGKGVFDGQGATVYKKAA 132

Query: 75  --SAWPSDTSNRPVSMKL--SSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPA 134
             SAW    SN  V M    + VN + +  +TS + K FH  V GC +ITFD  T+ AP 
Sbjct: 133 PASAWSGKNSNSKVFMNFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPG 192

Query: 135 DSPNTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKY 194
           DSPNTD IH+ KS+ + I+++ I +GDDC+S+G GSK I +  V CGPGHG+S+GSLGK+
Sbjct: 193 DSPNTDGIHMGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKF 252

Query: 195 PNEEDVSEVTIRDSTLVGTDNGVRIKTW 211
             EE+V  +T+++ TL  TDNGVRIKTW
Sbjct: 253 TTEENVEGITVKNCTLTATDNGVRIKTW 280

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BLAST of CmaCh16G009350 vs. TrEMBL
Match: A0A0A0L7H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063610 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.7e-84
Identity = 151/215 (70.23%), Postives = 180/215 (83.72%), Query Frame = 1


Query: 5   GFFIILRSIPKGPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNGG 64
           G F++L  + +GPC   I + + GELLAP+ ++FATG YWLSI +V+NLF+DG GSL+G 
Sbjct: 39  GRFLVLPLLLQGPCHGFIRIQLDGELLAPLDEHFATGDYWLSIDQVNNLFIDGLGSLDGR 98

Query: 65  GSSAWPSDTSNRPVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADS 124
           GS+AWPS + NRPVSM+L+ +N ARI+ I S N KLFHF +HGC D+TFDHVTVIAPA+S
Sbjct: 99  GSTAWPSTSHNRPVSMRLNGINNARITNIKSYNSKLFHFAMHGCRDVTFDHVTVIAPANS 158

Query: 125 PNTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPN 184
           PNTD IH+  SSGINIMHS I +GDDCISLGPGSKFINITN+QCGPGHGISIGSLGKYPN
Sbjct: 159 PNTDGIHISSSSGINIMHSTIGTGDDCISLGPGSKFINITNIQCGPGHGISIGSLGKYPN 218

Query: 185 EEDVSEVTIRDSTLVGTDNGVRIKTWSFSFSNFVS 220
           EEDV EVT+RDST +GT NGVRIKTWS S+S+ VS
Sbjct: 219 EEDVFEVTVRDSTFIGTSNGVRIKTWSSSYSSMVS 253

[Close]

BLAST of CmaCh16G009350 vs. TrEMBL
Match: A0A061F588_THECC (Pectin lyase-like superfamily protein, putative OS=Theobroma cacao GN=TCM_030754 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.3e-51
Identity = 108/224 (48.21%), Postives = 145/224 (64.73%), Query Frame = 1


Query: 4   LGFFIILRSIPKGPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNG 63
           LG +++L ++ +GPCK +I   + G L AP         +W+S   +D L + G GSL+G
Sbjct: 73  LGTYLVLPTVFQGPCKGAIAFQVKGLLRAPTDAASLHLDHWISFRYIDRLTITGGGSLDG 132

Query: 64  GGSSAWPSDTSNR-------PVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHV 123
            G+SAWP +T          PV+++   V  + I+ ITS N K FHF +    +I    V
Sbjct: 133 QGASAWPYNTCLTDPNCPPFPVTLRFDFVTNSWINHITSINSKNFHFNIFASTNIRIHQV 192

Query: 124 TVIAPADSPNTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISI 183
            + AP DSPNTD IH+  S+GI+I  S I +GDDC+S+GPGS+ INITNV CGPGHG S+
Sbjct: 193 NISAPGDSPNTDGIHIGDSTGIHISDSEIATGDDCVSMGPGSQNINITNVHCGPGHGFSV 252

Query: 184 GSLGKYPNEEDVSEVTIRDSTLVGTDNGVRIKTWSFSFSNFVSD 221
           GSLGK PNE+DV+ VT+R+ TL GT NG+RIKTWS S S+  SD
Sbjct: 253 GSLGKSPNEKDVAGVTVRNCTLTGTLNGLRIKTWSPSHSSRCSD 296

[Close]

BLAST of CmaCh16G009350 vs. TrEMBL
Match: A0A0A0L660_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063620 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.8e-50
Identity = 97/140 (69.29%), Postives = 114/140 (81.43%), Query Frame = 1


Query: 80  MKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADSPNTDEIHVFKSSGIN 139
           MK ++VNTA I  I+S + K FHF VH   D+TFD+VTV+APA+SPNTD IH+  SSGIN
Sbjct: 1   MKFNNVNTASIKNISSFDSKFFHFAVHASRDVTFDNVTVVAPANSPNTDGIHISTSSGIN 60

Query: 140 IMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPNEEDVSEVTIRDSTLV 199
           IMHS I +GDDCISLGPGSK INI+NV CGPGHGISIGSLGK PNEEDV +VT+RDST +
Sbjct: 61  IMHSTIGTGDDCISLGPGSKMINISNVHCGPGHGISIGSLGKNPNEEDVFDVTVRDSTFI 120

Query: 200 GTDNGVRIKTWSFSFSNFVS 220
           GT NG RIK+WS  +S+ VS
Sbjct: 121 GTSNGARIKSWSSPYSSMVS 140

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BLAST of CmaCh16G009350 vs. TrEMBL
Match: A0A059CRS9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02249 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.7e-50
Identity = 99/215 (46.05%), Postives = 137/215 (63.72%), Query Frame = 1


Query: 4   LGFFIILRSIPKGPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNG 63
           LG +++   + KGPC   I + + G +  PV K+  +  +W++   VD L +DG G+ +G
Sbjct: 79  LGTYMVWPVVLKGPCAGPITVTVEGVVKGPVDKSTFSLDHWITFQSVDGLLIDGGGTFDG 138

Query: 64  GGSSAWPSDTSNR-------PVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHV 123
            G  AW  +  ++       PVS++ + V  A IS ITS N   FHF +  C  + F HV
Sbjct: 139 QGQEAWSYNNCSKNSNCKLLPVSLRFNYVKNALISNITSVNSMFFHFVLFSCDALEFRHV 198

Query: 124 TVIAPADSPNTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISI 183
            ++AP +SPNTD IH+  SS I I  SVI +GDDC+S+GPGSK + +  VQCGPGHG S+
Sbjct: 199 RIVAPDESPNTDGIHIGHSSRITIADSVISTGDDCVSVGPGSKGVKVVGVQCGPGHGFSV 258

Query: 184 GSLGKYPNEEDVSEVTIRDSTLVGTDNGVRIKTWS 212
           GSLGKYP E DVSE+++   T+VGT NGVRIKTW+
Sbjct: 259 GSLGKYPGEADVSELSVSGCTMVGTQNGVRIKTWA 293

[Close]

BLAST of CmaCh16G009350 vs. TrEMBL
Match: W9RBH8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014009 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.4e-49
Identity = 100/222 (45.05%), Postives = 141/222 (63.51%), Query Frame = 1


Query: 5   GFFIILRSIPKGPCKVSIGLLIHGELLAPVSKNFATGV-YWLSISKVDNLFVDGSGSLNG 64
           G +++   + KG CK  +   + G+L AP  +     + +W++   VDN  + G GSL+G
Sbjct: 69  GTYLVNPVVLKGTCKGQMVFFLQGDLKAPTDQKSWDDIDHWITFQYVDNFVMSGGGSLDG 128

Query: 65  GGSSAWPSDTSNR-------PVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHV 124
            G+SAWP +T N+       PVS++L  VN A IS I   N K FH  +  C++I  +H+
Sbjct: 129 QGASAWPYNTCNKDSHCKKLPVSLRLDFVNNAWISYIKLINSKNFHMNIFACNNIKLEHM 188

Query: 125 TVIAPADSPNTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISI 184
            ++AP DSPNTD IH+  S+GI +  S+I +GDDC+S GPG K ++I  VQCGPGHGISI
Sbjct: 189 HIMAPGDSPNTDGIHIALSTGIKVWDSIISTGDDCLSFGPGMKDVDIWKVQCGPGHGISI 248

Query: 185 GSLGKYPNEEDVSEVTIRDSTLVGTDNGVRIKTWSFSFSNFV 219
           GSLG  PNE+DV    +R+S  +GT NGVRIKTW+   ++ V
Sbjct: 249 GSLGSSPNEKDVQGFIVRNSRFIGTQNGVRIKTWALPHASNV 290

[Close]

BLAST of CmaCh16G009350 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 178.3 bits (451), Expect = 5.4e-45
Identity = 88/202 (43.56%), Postives = 131/202 (64.85%), Query Frame = 1


Query: 16  GPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNGGGSSAWPSDTSN 75
           GPCK  + + + G L A   K       W+   +++   ++G G  +G G++AW  +  +
Sbjct: 72  GPCKAPVEINLQGTLKAD-GKAIQGKERWVVFLRINGFKLNGGGIFDGEGNAAWRVNNCH 131

Query: 76  R-------PVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADSPNTD 135
           +       P+S++   V  A I  I+S + K FH  V G  ++TFD+V VIAPA+SPNTD
Sbjct: 132 KTFECKKLPISIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTD 191

Query: 136 EIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPNEEDV 195
            IH+ +S G+ I++S I +GDDCIS+G G K +++ NV CGPGHGIS+GSLG+Y +E+DV
Sbjct: 192 GIHLGRSEGVKILNSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVGSLGRYVHEQDV 251

Query: 196 SEVTIRDSTLVGTDNGVRIKTW 211
           + +T+ + TL GTDNG+RIKTW
Sbjct: 252 TGITVVNCTLQGTDNGLRIKTW 272

[Close]

BLAST of CmaCh16G009350 vs. TAIR10
Match: AT2G26620.1 (AT2G26620.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 174.9 bits (442), Expect = 6.0e-44
Identity = 91/214 (42.52%), Postives = 127/214 (59.35%), Query Frame = 1


Query: 16  GPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNGGGSSAWP-SDTS 75
           GPCK  I  +I G LLAP + N      W++   ++NL + GSG+L+G G  +WP +D  
Sbjct: 83  GPCKNPIEFIIDGTLLAPANPNDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPLNDCH 142

Query: 76  NRP------VSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADSPNTD 135
             P      +SM  + VN + I  ITS N K+ HF     H      VT+ AP+DSPNTD
Sbjct: 143 KNPNCPKLAISMGFAFVNNSNIKDITSLNSKMGHFNFFFVHHFNITGVTITAPSDSPNTD 202

Query: 136 EIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPNEEDV 195
            I +   S I I ++ I +GDDCI++  G+  +NI+N+ CGPGHGIS+GSLGK  +E+DV
Sbjct: 203 GIKMGSCSNIQISNTNIGTGDDCIAILSGTTKLNISNINCGPGHGISVGSLGKNKDEKDV 262

Query: 196 SEVTIRDSTLVGTDNGVRIKTWSFSFSNFVSDRF 223
            ++ +RD    GT +G+RIKTW  S S  +   F
Sbjct: 263 KDLFVRDVIFNGTSDGIRIKTWESSASKILVSNF 296

[Close]

BLAST of CmaCh16G009350 vs. TAIR10
Match: AT1G43090.1 (AT1G43090.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 174.9 bits (442), Expect = 6.0e-44
Identity = 90/214 (42.06%), Postives = 129/214 (60.28%), Query Frame = 1


Query: 16  GPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNGGGSSAWPSDTSN 75
           GPCK  I  +I G LLAP +        W++   ++NL + GSG+L+G G  +WP +  +
Sbjct: 83  GPCKNPIEFVIDGTLLAPANPRDIKQDTWINFRYINNLSISGSGTLDGQGKYSWPLNDCH 142

Query: 76  R-------PVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADSPNTD 135
           +        ++M  + VN +RI  ITS N K+ HF     H      VT+ AP DSPNTD
Sbjct: 143 KNTNCPKLAMTMGFAFVNNSRIKDITSLNSKMGHFNFFSVHRFNITGVTITAPGDSPNTD 202

Query: 136 EIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPNEEDV 195
            I +   S I+I ++ I +GDDCI++  G+  ++I+NV+CGPGHGIS+GSLGK  +E+DV
Sbjct: 203 GIKMGSCSNIHISNTNIGTGDDCIAILSGTTNLDISNVKCGPGHGISVGSLGKNKDEKDV 262

Query: 196 SEVTIRDSTLVGTDNGVRIKTWSFSFSNFVSDRF 223
             +T+RD+   GT +G+RIKTW  S S  V   F
Sbjct: 263 KHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNF 296

[Close]

BLAST of CmaCh16G009350 vs. TAIR10
Match: AT1G43080.1 (AT1G43080.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 174.5 bits (441), Expect = 7.8e-44
Identity = 89/214 (41.59%), Postives = 129/214 (60.28%), Query Frame = 1


Query: 16  GPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNGGGSSAWPSDTSN 75
           GPCK  I  +I G LLAP +        W++   ++NL + GSG+L+G G  +WP +  +
Sbjct: 83  GPCKNPIEFVIDGTLLAPANPRDIKQDTWINFRYINNLSISGSGTLDGQGKYSWPLNDCH 142

Query: 76  R-------PVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADSPNTD 135
           +        ++M  + VN +RI  ITS N K+ HF     H      VT+ AP DSPNTD
Sbjct: 143 KNTNCPKLAMTMGFAFVNNSRIKDITSLNSKMGHFNFFSVHRFNITGVTITAPGDSPNTD 202

Query: 136 EIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPNEEDV 195
            I +   S I+I ++ I +GDDCI++  G+  ++I+N++CGPGHGIS+GSLGK  +E+DV
Sbjct: 203 GIKMGSCSNIHISNTNIGTGDDCIAILSGTTNLDISNIKCGPGHGISVGSLGKNKDEKDV 262

Query: 196 SEVTIRDSTLVGTDNGVRIKTWSFSFSNFVSDRF 223
             +T+RD+   GT +G+RIKTW  S S  V   F
Sbjct: 263 KHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNF 296

[Close]

BLAST of CmaCh16G009350 vs. TAIR10
Match: AT3G07850.1 (AT3G07850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-43
Identity = 82/205 (40.00%), Postives = 134/205 (65.37%), Query Frame = 1


Query: 15  KGPCKVSIGLLIHGELLAPVS-KNFATGVYWLSISKVDNLFVDGSGSL-NGGGSSAWPSD 74
           KGPCK  + L ++G   AP + K       W+    + +  ++G+ ++ +G GS AW ++
Sbjct: 118 KGPCKGPVTLELNGNFKAPATVKTTKPHAGWIDFENIADFTLNGNKAIFDGQGSLAWKAN 177

Query: 75  T-------SNRPVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADSP 134
                   ++ P++++ + +  ++I+ ITS+N KLFH  +  C +IT   + + AP +S 
Sbjct: 178 DCAKTGKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESL 237

Query: 135 NTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPNE 194
           NTD IH+ +S+G+N++ + I++GDDC+S+G G++ + + NV+CGPGHGISIGSLG+YPNE
Sbjct: 238 NTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNE 297

Query: 195 EDVSEVTIRDSTLVGTDNGVRIKTW 211
           + V  VT+R   +  TDNGVRIKTW
Sbjct: 298 QPVKGVTVRKCLIKNTDNGVRIKTW 322

[Close]

BLAST of CmaCh16G009350 vs. NCBI nr
Match: gi|700200928|gb|KGN56061.1| (hypothetical protein Csa_3G063610 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 2.5e-84
Identity = 151/215 (70.23%), Postives = 180/215 (83.72%), Query Frame = 1


Query: 5   GFFIILRSIPKGPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNGG 64
           G F++L  + +GPC   I + + GELLAP+ ++FATG YWLSI +V+NLF+DG GSL+G 
Sbjct: 39  GRFLVLPLLLQGPCHGFIRIQLDGELLAPLDEHFATGDYWLSIDQVNNLFIDGLGSLDGR 98

Query: 65  GSSAWPSDTSNRPVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADS 124
           GS+AWPS + NRPVSM+L+ +N ARI+ I S N KLFHF +HGC D+TFDHVTVIAPA+S
Sbjct: 99  GSTAWPSTSHNRPVSMRLNGINNARITNIKSYNSKLFHFAMHGCRDVTFDHVTVIAPANS 158

Query: 125 PNTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPN 184
           PNTD IH+  SSGINIMHS I +GDDCISLGPGSKFINITN+QCGPGHGISIGSLGKYPN
Sbjct: 159 PNTDGIHISSSSGINIMHSTIGTGDDCISLGPGSKFINITNIQCGPGHGISIGSLGKYPN 218

Query: 185 EEDVSEVTIRDSTLVGTDNGVRIKTWSFSFSNFVS 220
           EEDV EVT+RDST +GT NGVRIKTWS S+S+ VS
Sbjct: 219 EEDVFEVTVRDSTFIGTSNGVRIKTWSSSYSSMVS 253

[Close]

BLAST of CmaCh16G009350 vs. NCBI nr
Match: gi|778688362|ref|XP_011652730.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 2.5e-84
Identity = 151/215 (70.23%), Postives = 180/215 (83.72%), Query Frame = 1


Query: 5   GFFIILRSIPKGPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNGG 64
           G F++L  + +GPC   I + + GELLAP+ ++FATG YWLSI +V+NLF+DG GSL+G 
Sbjct: 39  GRFLVLPLLLQGPCHGFIRIQLDGELLAPLDEHFATGDYWLSIDQVNNLFIDGLGSLDGR 98

Query: 65  GSSAWPSDTSNRPVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADS 124
           GS+AWPS + NRPVSM+L+ +N ARI+ I S N KLFHF +HGC D+TFDHVTVIAPA+S
Sbjct: 99  GSTAWPSTSHNRPVSMRLNGINNARITNIKSYNSKLFHFAMHGCRDVTFDHVTVIAPANS 158

Query: 125 PNTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPN 184
           PNTD IH+  SSGINIMHS I +GDDCISLGPGSKFINITN+QCGPGHGISIGSLGKYPN
Sbjct: 159 PNTDGIHISSSSGINIMHSTIGTGDDCISLGPGSKFINITNIQCGPGHGISIGSLGKYPN 218

Query: 185 EEDVSEVTIRDSTLVGTDNGVRIKTWSFSFSNFVS 220
           EEDV EVT+RDST +GT NGVRIKTWS S+S+ VS
Sbjct: 219 EEDVFEVTVRDSTFIGTSNGVRIKTWSSSYSSMVS 253

[Close]

BLAST of CmaCh16G009350 vs. NCBI nr
Match: gi|659096624|ref|XP_008449197.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 318.9 bits (816), Expect = 7.3e-84
Identity = 156/216 (72.22%), Postives = 178/216 (82.41%), Query Frame = 1


Query: 4   LGFFIILRSIPKGPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNG 63
           LG F++L  + +GPC   I + + GELLAP+++N  TG YWLSI KV+NLF+DG G LNG
Sbjct: 38  LGRFLVLPLLLQGPCHGFIHIQLDGELLAPLNEN--TGDYWLSIDKVNNLFIDGLGRLNG 97

Query: 64  GGSSAWPSDTSNRPVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPAD 123
            GS+AWPS + NRP+SMKL+ +N ARIS I S N KLFHF VHGC D+TFDHVTVIAPA+
Sbjct: 98  RGSTAWPSASHNRPISMKLTGINNARISNIKSYNSKLFHFAVHGCRDVTFDHVTVIAPAN 157

Query: 124 SPNTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYP 183
           SPNTD IHV  SSGINIMHS I +GDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYP
Sbjct: 158 SPNTDGIHVSLSSGINIMHSTIGTGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYP 217

Query: 184 NEEDVSEVTIRDSTLVGTDNGVRIKTWSFSFSNFVS 220
           NEEDV EVT+RDST +GT NG RIKTWS S+SN VS
Sbjct: 218 NEEDVFEVTVRDSTFLGTTNGARIKTWSSSYSNMVS 251

[Close]

BLAST of CmaCh16G009350 vs. NCBI nr
Match: gi|449463753|ref|XP_004149596.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 1.5e-73
Identity = 136/215 (63.26%), Postives = 166/215 (77.21%), Query Frame = 1


Query: 5   GFFIILRSIPKGPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNGG 64
           G F++L  + +GPC   I + + GELLA   K FA G +WLSI  V+NLF+DG G L G 
Sbjct: 29  GKFLVLPLLLQGPCHGVIRIQLDGELLASSDKQFAIGDHWLSIENVNNLFIDGLGRLTGS 88

Query: 65  GSSAWPSDTSNRPVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHVTVIAPADS 124
           G+SAWPS++ NRP+SMK ++VNTA I  I+S + K FHF VH   D+TFD+VTV+APA+S
Sbjct: 89  GASAWPSNSLNRPISMKFNNVNTASIKNISSFDSKFFHFAVHASRDVTFDNVTVVAPANS 148

Query: 125 PNTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPN 184
           PNTD IH+  SSGINIMHS I +GDDCISLGPGSK INI+NV CGPGHGISIGSLGK PN
Sbjct: 149 PNTDGIHISTSSGINIMHSTIGTGDDCISLGPGSKMINISNVHCGPGHGISIGSLGKNPN 208

Query: 185 EEDVSEVTIRDSTLVGTDNGVRIKTWSFSFSNFVS 220
           EEDV +VT+RDST +GT NG RIK+WS  +S+ VS
Sbjct: 209 EEDVFDVTVRDSTFIGTSNGARIKSWSSPYSSMVS 243

[Close]

BLAST of CmaCh16G009350 vs. NCBI nr
Match: gi|590606088|ref|XP_007020651.1| (Pectin lyase-like superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 209.5 bits (532), Expect = 6.2e-51
Identity = 108/224 (48.21%), Postives = 145/224 (64.73%), Query Frame = 1


Query: 4   LGFFIILRSIPKGPCKVSIGLLIHGELLAPVSKNFATGVYWLSISKVDNLFVDGSGSLNG 63
           LG +++L ++ +GPCK +I   + G L AP         +W+S   +D L + G GSL+G
Sbjct: 73  LGTYLVLPTVFQGPCKGAIAFQVKGLLRAPTDAASLHLDHWISFRYIDRLTITGGGSLDG 132

Query: 64  GGSSAWPSDTSNR-------PVSMKLSSVNTARISKITSSNRKLFHFGVHGCHDITFDHV 123
            G+SAWP +T          PV+++   V  + I+ ITS N K FHF +    +I    V
Sbjct: 133 QGASAWPYNTCLTDPNCPPFPVTLRFDFVTNSWINHITSINSKNFHFNIFASTNIRIHQV 192

Query: 124 TVIAPADSPNTDEIHVFKSSGINIMHSVIRSGDDCISLGPGSKFINITNVQCGPGHGISI 183
            + AP DSPNTD IH+  S+GI+I  S I +GDDC+S+GPGS+ INITNV CGPGHG S+
Sbjct: 193 NISAPGDSPNTDGIHIGDSTGIHISDSEIATGDDCVSMGPGSQNINITNVHCGPGHGFSV 252

Query: 184 GSLGKYPNEEDVSEVTIRDSTLVGTDNGVRIKTWSFSFSNFVSD 221
           GSLGK PNE+DV+ VT+R+ TL GT NG+RIKTWS S S+  SD
Sbjct: 253 GSLGKSPNEKDVAGVTVRNCTLTGTLNGLRIKTWSPSHSSRCSD 296

The following BLAST results are available for this feature:

BLAST of CmaCh16G009350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR_OENOR	2.5e-47	45.10	Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1	[more]
PGLR2_PLAAC	7.1e-47	47.55	Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1	[more]
PGLR3_MAIZE	3.9e-45	44.83	Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1	[more]
PGLR1_MAIZE	6.7e-45	43.46	Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1	[more]
PGLR_MEDSA	6.7e-45	44.71	Polygalacturonase OS=Medicago sativa PE=2 SV=1	[more]

BLAST of CmaCh16G009350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7H9_CUCSA	1.7e-84	70.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063610 PE=3 SV=1	[more]
A0A061F588_THECC	4.3e-51	48.21	Pectin lyase-like superfamily protein, putative OS=Theobroma cacao GN=TCM_030754...	[more]
A0A0A0L660_CUCSA	2.8e-50	69.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063620 PE=3 SV=1	[more]
A0A059CRS9_EUCGR	3.7e-50	46.05	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02249 PE=3 SV=1	[more]
W9RBH8_9ROSA	2.4e-49	45.05	Uncharacterized protein OS=Morus notabilis GN=L484_014009 PE=3 SV=1	[more]

BLAST of CmaCh16G009350 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07840.1	5.4e-45	43.56	Pectin lyase-like superfamily protein	[more]
AT2G26620.1	6.0e-44	42.52	Pectin lyase-like superfamily protein	[more]
AT1G43090.1	6.0e-44	42.06	Pectin lyase-like superfamily protein	[more]
AT1G43080.1	7.8e-44	41.59	Pectin lyase-like superfamily protein	[more]
AT3G07850.1	1.0e-43	40.00	Pectin lyase-like superfamily protein	[more]

BLAST of CmaCh16G009350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200928\|gb\|KGN56061.1\|	2.5e-84	70.23	hypothetical protein Csa_3G063610 [Cucumis sativus]	[more]
gi\|778688362\|ref\|XP_011652730.1\|	2.5e-84	70.23	PREDICTED: exopolygalacturonase-like [Cucumis sativus]	[more]
gi\|659096624\|ref\|XP_008449197.1\|	7.3e-84	72.22	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
gi\|449463753\|ref\|XP_004149596.1\|	1.5e-73	63.26	PREDICTED: exopolygalacturonase-like [Cucumis sativus]	[more]
gi\|590606088\|ref\|XP_007020651.1\|	6.2e-51	48.21	Pectin lyase-like superfamily protein, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000743	Glyco_hydro_28
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G009350.1	CmaCh16G009350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 15..214 score: 7.3
IPR000743	Glycoside hydrolase, family 28	PROSITE	PS00502	POLYGALACTURONASE	coord: 165..178 scor
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 15..220 score: 4.56
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 10..211 score: 6.9
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 5..210 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G009350	MELO3C014147	Melon (DHL92) v3.5.1	cmameB290

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G009350	Cucurbita pepo (Zucchini)	cmacpeB345
CmaCh16G009350	Bottle gourd (USVL1VR-Ls)	cmalsiB317
CmaCh16G009350	Cucumber (Gy14) v2	cgybcmaB340
CmaCh16G009350	Melon (DHL92) v3.6.1	cmamedB343
CmaCh16G009350	Silver-seed gourd	carcmaB0676
CmaCh16G009350	Silver-seed gourd	carcmaB0819
CmaCh16G009350	Cucumber (Chinese Long) v3	cmacucB0381
CmaCh16G009350	Watermelon (97103) v2	cmawmbB338
CmaCh16G009350	Wax gourd	cmawgoB0419
CmaCh16G009350	Cucurbita maxima (Rimu)	cmacmaB358
CmaCh16G009350	Cucumber (Gy14) v1	cgycmaB0029
CmaCh16G009350	Cucurbita moschata (Rifu)	cmacmoB323
CmaCh16G009350	Cucurbita moschata (Rifu)	cmacmoB345
CmaCh16G009350	Wild cucumber (PI 183967)	cmacpiB333
CmaCh16G009350	Cucumber (Chinese Long) v2	cmacuB327
CmaCh16G009350	Watermelon (Charleston Gray)	cmawcgB285
CmaCh16G009350	Watermelon (97103) v1	cmawmB300