CmaCh16G009280 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G009280
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Arginine/serine-rich splicing factor 35
Location	Cma_Chr16 : 7056404 .. 7059914 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTAGGGTTAAAAAAAAGAAAACCCTAAAAGCTCTCTTTTTTTCCACAGCCGCAGTCCTCCCGAGGTACCCTCTCACTCCTAGCCTTTCCGCCCAATCCACACTGCGTTAATCGACCTCCGACGGCCAGCATACCATCTACGGCGGCCTGCAACTCTTCTCTTCCTTCAAAAGAATTTTGGCTGAGACTCGTCGATTTGTTTGGAAGCGGTAAGTGCATAGTTGTTGTGGATCTTTCATTATGTTATTTACTCTTAAGATTAGTTTCAAATAATTTTCTTGTTGATGACCTGTTTGTTTTTGTTGTTGTCTTCATATTGTGAGAGTGATGTGTTAAATGTTGTACTTTTCTTTTCCGGTATCTTTTACAGGTAGTATGAAGCCGATTTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATTTGGAGAGACTGTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTGGTGAGCTTCTATCCATAGCATGTTTTTCTGATGTGTGTGTTTGAATTCCCTTTTTATAACGAAAAATTTACCAGACATATATCAGAAACACAAAAGAGGACGTTTGTGTTATGATTCCTGTATTAATTTTAAAGTTGCGTTAAATTTGTGTCATGTCGATACGAGGCACTTGCAAATTCTGAATCTATGCAATATACTGAACTATCAAAGTTACTTACAACCCGCTAAGAAAGTGTGGATACAACGTCCGCAAGGCAATTCAACTGTTGGAAATTCCCCCAAAGTTGGAGGTCGCCGTTCTTATTGCATTTGGTGCGTTGCAGTACAAATCGGCATCATCCAGCATATGGAAACCGGAGAAGGCGACTTTTGCTGGGTTTTTGGTTGGGGGTTTTTAAAAACATATTTGAGAAAAGAAGAGAGTATGTTTTAAATCCTAAACCGCCTTGGCCAGAATTTTCTTTGGTGCAGGATTTTCTTCGCATATTCATAATCCTCTTGGTTAATGATGGCTCTTCAGAATTGAGTTTTCCGTCTGTGACAAGCTTCCTCTTCTTGTTTCCACGACGATTCAAACCGATCCTCAATGGCACTACTACTATCTTACATTTTCCTCCGACACTTTGCTTTCCAGTTTCCATTCCTCATGACTTTTGCATGCCTACAATTCATACATTGTTTCAAGGTTGAAACATTGTCAACCTCAGCTGAGCCTGCAGAATAATGGAGAAGGCACTTTCTATTTGTAGACCTACCATGAGACATCCTGTTTTGGATTATTGCTCCTTGACATCACTTAGTTCATACACAAGGTCTGTTGCTAAATTCACTGGTAACTTAGTTTATAGATTTCACGAAGGTTGTGAATATTTTTTTCTTGTGGTAAGAAATTTTTGTGGTTTATTGTGTTCTTCAATAGGGAGAAAATTGACATTGGATTTTGAGGAATTCGTTGGTGGAAAAATTATTTGGCGTCACACATATGCCATAATTAGTTTTTTCTGTTTGATTGGTTTACAGGCTTTGCTTTCATCTACATGGAGGATGAGAGAGATGCTGAGGATGCTATCCGTGCACTTGATCGGAGAGAATTTGGTCGAAAGGGCCGCAGACTACGTGTTGAGTGGACCAAAGTAATGTTCATTGATATGGCACAACTTCGAATGGACTCTTTCCTGTCCATCCCTTTGTGGAACTTTGTTTACTGTATCTTCAAATTGTATTTCGGTCAATCATTCGTTTGCTTTGCAGCAAGAACGTGGGATTAGAAGACCTGGTGGAGGAGGTGGTGGAGGTGGAGGAGGTTCGAGGAGATCCTCTACGAATACAAGACCTTCGAAGACTTTATTTGTTATCAACTTTGACCCGTATCATACTAGGACAAGAGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAGTGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAAGACGATGCCACTAGAGCATTGGAGCTTACAAACATGAGGTGAGTTTTCTATCATTGAATTGTATACGCATTTTTGTGAGTAGTAAGGTCATTTATATTGAAGGTATGAGTTGATACCCGTTTGCCCTCGTCTCTCTGAGACAATCTGAAGGAAAATTACATTGCTATTTGTACTCGTTAGATGCCTTTTATATACATGTTAAGTTATTGGTAGGCCTTTTAATTGTTATTACTTTGTTCAGCAAATTGATGGATCGAGTGATTTCAGTGGAATACGCTGTTCGAGATGATGACGAGAAGAGAAATGGATTTAGTCCTGATAGGAATCGTGATAGGTCTCCCGATAGAAAACGACGATCTCCAAGTCCCTATAGAAAAGAGCGAGGAAGTCCTGATTATGGCAATGGTATTAGCCCTAGTCCATATAGGAGACAAAGGGCTAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTATCAGAGGGAGAGAGAGAGGGAGAGGGGTTCTCCTGATTATGGTCGTGGTCGTAGTCCGAATCAGAGTCCTTATAGGCGAGAGAGGGAGAGATCAAGTGACCATGGTCGTGGTCGTAGTCCGAATCAGAGTCCTTATAGGCGAGAGAGGGAGAGATCACGTGACCATGGTCGTGGTCGTAGTCCTAATCAGAGTCCTTATAGGAGAGAGAGGGAGAGATCAAGCGACCATGCCAGGGCCCCTAGCCATAGCCCTCCCCATCAGAGGGAAAGACCAAATGATGACCGAGTCCGCGACCGAAGCCGCAGCCCTTACGGGAGAGAAAGGGGGAGTCCTACTACCGATGGACGTGGCAGTAGCTATAGTCCTCGCGATAGAGAGAGGTCAAACCCAGACAATGGTCATGATCAGCGGCTGAACACAGTAGTAGCCGAACCCGAACCCGGGGATAGCCCCAGTTATGGTGGGACAACTCAGAGCCCAAAGCACCGTGGATATAGCAGGTTTGTACTTGGAGTTTGTTTTATTATGATTACTATTATTGTTATTGATTATTTTTCCAAACTTTCATCTTATGCCTGCGTTCGTGTTTTACCCGGTGTTGCAGCCGTTCACCACAAGCAGAGGAATGATGATGATGATGCAGTAGAAAGTGAAGGTATGTGGATCTCAATCTGCTGCTTCAGGGTATGTTTGGTTGTGTAATCAGTATTGAGTAGCAAACATGTATTCAAACGATACACTCTGCTTTGTGATTTCCAATTACATTTGTGGCGCTTTAATTTCGAGTGATTATTCTATGCTTGCAATCAAAATTAACAGAACCACCCTGATCCATATTTGGCTGTCCTAAGTGAATCAACTTGTATTTTTGGGGTATGAATAGGTTGAGCTTGGTTTAGCAGTAACACTTCGGTTTTAGAGCGCCTAATATCACCTTTGCCAAAATCGCTCTCGTTCGGATATTGGCAATGAACCACCCTGCCTTGGATTGTGCCATGAAAATGATAATTTTGTCGGTTGTTTCATAAGATACGTCATTACTTTCAGATTAAATATGACATGGGTTTCCTAA

mRNA sequence

ATGAAAATTAGGCCGCAGTCCTCCCGAGGTACCCTCTCACTCCTAGCCTTTCCGCCCAATCCACACTGCGTTAATCGACCTCCGACGGCCAGCATACCATCTACGGCGGCCTGCAACTCTTCTCTTCCTTCAAAAGAATTTTGGCTGAGACTCGTCGATTTGTTTGGAAGCGGTAGTATGAAGCCGATTTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATTTGGAGAGACTGTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTGGCTTTGCTTTCATCTACATGGAGGATGAGAGAGATGCTGAGGATGCTATCCGTGCACTTGATCGGAGAGAATTTGGTCGAAAGGGCCGCAGACTACGTGTTGAGTGGACCAAACAAGAACGTGGGATTAGAAGACCTGGTGGAGGAGGTGGTGGAGGTGGAGGAGGTTCGAGGAGATCCTCTACGAATACAAGACCTTCGAAGACTTTATTTGTTATCAACTTTGACCCGTATCATACTAGGACAAGAGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAGTGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAAGACGATGCCACTAGAGCATTGGAGCTTACAAACATGAGCAAATTGATGGATCGAGTGATTTCAGTGGAATACGCTGTTCGAGATGATGACGAGAAGAGAAATGGATTTAGTCCTGATAGGAATCGTGATAGGTCTCCCGATAGAAAACGACGATCTCCAAGTCCCTATAGAAAAGAGCGAGGAAGTCCTGATTATGGCAATGGTATTAGCCCTAGTCCATATAGGAGACAAAGGGCTAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTATCAGAGGGAGAGAGAGAGGGAGAGGGGTTCTCCTGATTATGGTCGTGGTCGTAGTCCGAATCAGAGTCCTTATAGGCGAGAGAGGGAGAGATCAAGTGACCATGGTCGTGGTCGTAGTCCGAATCAGAGTCCTTATAGGCGAGAGAGGGAGAGATCACGTGACCATGGTCGTGGTCGTAGTCCTAATCAGAGTCCTTATAGGAGAGAGAGGGAGAGATCAAGCGACCATGCCAGGGCCCCTAGCCATAGCCCTCCCCATCAGAGGGAAAGACCAAATGATGACCGAGTCCGCGACCGAAGCCGCAGCCCTTACGGGAGAGAAAGGGGGAGTCCTACTACCGATGGACGTGGCAGTAGCTATAGTCCTCGCGATAGAGAGAGGTCAAACCCAGACAATGGTCATGATCAGCGGCTGAACACAGTAGTAGCCGAACCCGAACCCGGGGATAGCCCCAGTTATGGTGGGACAACTCAGAGCCCAAAGCACCGTGGATATAGCAGATTAAATATGACATGGGTTTCCTAA

Coding sequence (CDS)

ATGAAAATTAGGCCGCAGTCCTCCCGAGGTACCCTCTCACTCCTAGCCTTTCCGCCCAATCCACACTGCGTTAATCGACCTCCGACGGCCAGCATACCATCTACGGCGGCCTGCAACTCTTCTCTTCCTTCAAAAGAATTTTGGCTGAGACTCGTCGATTTGTTTGGAAGCGGTAGTATGAAGCCGATTTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATTTGGAGAGACTGTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTGGCTTTGCTTTCATCTACATGGAGGATGAGAGAGATGCTGAGGATGCTATCCGTGCACTTGATCGGAGAGAATTTGGTCGAAAGGGCCGCAGACTACGTGTTGAGTGGACCAAACAAGAACGTGGGATTAGAAGACCTGGTGGAGGAGGTGGTGGAGGTGGAGGAGGTTCGAGGAGATCCTCTACGAATACAAGACCTTCGAAGACTTTATTTGTTATCAACTTTGACCCGTATCATACTAGGACAAGAGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAGTGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAAGACGATGCCACTAGAGCATTGGAGCTTACAAACATGAGCAAATTGATGGATCGAGTGATTTCAGTGGAATACGCTGTTCGAGATGATGACGAGAAGAGAAATGGATTTAGTCCTGATAGGAATCGTGATAGGTCTCCCGATAGAAAACGACGATCTCCAAGTCCCTATAGAAAAGAGCGAGGAAGTCCTGATTATGGCAATGGTATTAGCCCTAGTCCATATAGGAGACAAAGGGCTAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTATCAGAGGGAGAGAGAGAGGGAGAGGGGTTCTCCTGATTATGGTCGTGGTCGTAGTCCGAATCAGAGTCCTTATAGGCGAGAGAGGGAGAGATCAAGTGACCATGGTCGTGGTCGTAGTCCGAATCAGAGTCCTTATAGGCGAGAGAGGGAGAGATCACGTGACCATGGTCGTGGTCGTAGTCCTAATCAGAGTCCTTATAGGAGAGAGAGGGAGAGATCAAGCGACCATGCCAGGGCCCCTAGCCATAGCCCTCCCCATCAGAGGGAAAGACCAAATGATGACCGAGTCCGCGACCGAAGCCGCAGCCCTTACGGGAGAGAAAGGGGGAGTCCTACTACCGATGGACGTGGCAGTAGCTATAGTCCTCGCGATAGAGAGAGGTCAAACCCAGACAATGGTCATGATCAGCGGCTGAACACAGTAGTAGCCGAACCCGAACCCGGGGATAGCCCCAGTTATGGTGGGACAACTCAGAGCCCAAAGCACCGTGGATATAGCAGATTAAATATGACATGGGTTTCCTAA

Protein sequence

MKIRPQSSRGTLSLLAFPPNPHCVNRPPTASIPSTAACNSSLPSKEFWLRLVDLFGSGSMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDHGRGRSPNQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGSSYSPRDRERSNPDNGHDQRLNTVVAEPEPGDSPSYGGTTQSPKHRGYSRLNMTWVS

Homology

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BLAST of CmaCh16G009280 vs. Swiss-Prot
Match: RS40_ARATH (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 SV=2)

HSP 1 Score: 379.4 bits (973), Expect = 5.7e-104
Identity = 230/366 (62.84%), Postives = 274/366 (74.86%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDERDAEDAIRALDR EF
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 120 GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDL 179
           GRKGRRLRVEWTK ERG      G    GGGSRRSS++ RPSKTLFVINFD  +TRTRDL
Sbjct: 61  GRKGRRLRVEWTKSERG------GDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDL 120

Query: 180 ERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEKR 239
           E+HF+PYGKI++VRIRRNFAF+QYE Q+DATRAL+ +N SKLMD+VISVEYAV+DDD + 
Sbjct: 121 EKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARG 180

Query: 240 NGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISP-SPYRRQRASPDYGSRRSPSPY 299
           NG SP+R RDRSP+R+RRSPSPY++ERGSPDYG G SP + YR++R SPDYG RRSPSPY
Sbjct: 181 NGHSPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPY 240

Query: 300 QRERERERGSPDYGRGRSPNQSPYRRER-------ERSSDHGRGR-SPNQSPYRRERERS 359
           ++ R   RGSP+YGR R  N SP RRER        RS ++ R R SPN SP+++E  R+
Sbjct: 241 KKSR---RGSPEYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKESPRN 300

Query: 360 RDHGRGRSPNQSPY-RRERERSS-DHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERG- 413
                G    +SP  RRER RSS ++ +  S   P    R + D   D + SP  + R  
Sbjct: 301 -----GVGEVESPIERRERSRSSPENGQVES---PGSIGRRDSDGGYDGAESPMQKSRSP 349

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BLAST of CmaCh16G009280 vs. Swiss-Prot
Match: SRS41_ARATH (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana GN=RS41 PE=1 SV=2)

HSP 1 Score: 373.6 bits (958), Expect = 3.1e-102
Identity = 232/406 (57.14%), Postives = 275/406 (67.73%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDERDAEDAIRALDR E+
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 120 GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDL 179
           GR GRRLRVEWTK +RG       G G  GGSRRSS+  RPSKTLFVINFD  +TRTRDL
Sbjct: 61  GRTGRRLRVEWTKNDRG-------GAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDL 120

Query: 180 ERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEKR 239
           ERHF+PYGKI++VRIRRNFAF+QYE Q+DATRAL+ TN SKLMD+VISVEYAV+DDD + 
Sbjct: 121 ERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRG 180

Query: 240 NGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYG-SRRSPSPY 299
           NG+SP+R RDRSPDR+RRSPSPYR+ERGSPDYG G SP  ++R+R SPDYG  RRSPSPY
Sbjct: 181 NGYSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPY 240

Query: 300 QRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDHGRGRS 359
           +R R     SPDY R         RRER  S ++G  R  N+SP +         GRG S
Sbjct: 241 KRARL----SPDYKR------DDRRRERVASPENGAVR--NRSPRK---------GRGES 300

Query: 360 PNQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGSSY 419
            +  PY + RE         S SPP     P + R   RS  PY + R            
Sbjct: 301 RSPPPYEKRRE---------SRSPP-----PYEKRRESRSPPPYEKRR-----------E 352

Query: 420 SPRDRERSNPDNGHDQRLNTVVAEPEPG------DSPSYGGTTQSP 459
             R R +S+P+NG  +    ++ E E G      DSP     ++SP
Sbjct: 361 RSRSRSKSSPENGQVESPGQIM-EVEAGRGYDGADSPIRESPSRSP 352

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BLAST of CmaCh16G009280 vs. Swiss-Prot
Match: SRS31_ARATH (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 SV=2)

HSP 1 Score: 274.2 bits (700), Expect = 2.6e-72
Identity = 159/285 (55.79%), Postives = 195/285 (68.42%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           M+P+F GNFEY+ RQ DLERLF +YG+VDRVDMKSG+AF+Y EDERDAEDAIR LD   F
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 120 GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDL 179
           G + RRL VEW K ERG  R          G  ++ +N +P+KTLFVINFDP  T+  D+
Sbjct: 61  GYEKRRLSVEWAKGERGRPR----------GDAKAPSNLKPTKTLFVINFDPIRTKEHDI 120

Query: 180 ERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEKR 239
           E+HF+PYGK+ +VRIRRNF+FVQ+E Q+DAT+ALE T  SK++DRV+SVEYA++DDDE+ 
Sbjct: 121 EKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDER- 180

Query: 240 NGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRRSPSPYQ 299
                DRN  RSP   RRS SP  + R SPDYG    PSP + +R SPDYG  RSP    
Sbjct: 181 ----DDRNGGRSP---RRSLSPVYRRRPSPDYGR--RPSPGQGRRPSPDYGRARSP---- 240

Query: 300 RERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYR 345
            E +R +G   Y R RSP+         RSSD+GR RSP    YR
Sbjct: 241 -EYDRYKGPAAYERRRSPDYG------RRSSDYGRQRSPGYDRYR 254

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BLAST of CmaCh16G009280 vs. Swiss-Prot
Match: RS31A_ARATH (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana GN=RS31A PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.7e-63
Identity = 143/282 (50.71%), Postives = 186/282 (65.96%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           M+ ++ GNF+YD R  DLERLFS++G+V RVDMKSG+AF+Y EDERDAEDAIR  D   F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 120 GRKGRRLRVEWTKQERGIR-RPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRD 179
           G   R+L VEW K  +G R +P  G         ++ +N RP+KTLFVINFDP  TR RD
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG---------KAVSNQRPTKTLFVINFDPIRTRERD 120

Query: 180 LERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEK 239
           +ERHF+PYGK+L+VR+RRNFAFVQ+  Q+DAT+AL+ T+ SKL+D+V+SVEYA+R+  E+
Sbjct: 121 MERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGER 180

Query: 240 RNGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRRSPSPY 299
            + ++  R        +RRSPSP  + R SPDY           +R SP+Y   + P+PY
Sbjct: 181 EDRYAGSR--------RRRSPSPVYRRRPSPDY----------TRRRSPEYDRYKGPAPY 240

Query: 300 QRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQ 341
           +R     R SPDYGR      S Y R R RS  + R RSP Q
Sbjct: 241 ER-----RKSPDYGR----RSSDYGRARARSPGYDRSRSPIQ 246

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BLAST of CmaCh16G009280 vs. Swiss-Prot
Match: SRSF1_HUMAN (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 2.6e-16
Identity = 75/223 (33.63%), Postives = 110/223 (49.33%), Query Frame = 1


Query: 63  IFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG-----FAFIYMEDERDAEDAIRALDRR 122
           I+ GN   D R  D+E +F +YG +  +D+K+      FAF+  ED RDAEDA+   D  
Sbjct: 18  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77

Query: 123 EFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTR 182
           ++   G RLRVE+ +  RG  R GGGGGGGG    R    +R S+   V++  P     +
Sbjct: 78  DYD--GYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 137

Query: 183 DLERHFDPYGKILSVRIRRN-FAFVQYELQDDATRALELTNMSKLMDRVISVEY-AVRDD 242
           DL+ H    G +    + R+    V++  ++D T A+   + +K         Y  V+ D
Sbjct: 138 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 197

Query: 243 DEKRNGFSPDRNRDRSPDRKR-------RSPSPYRKERGSPDY 272
             +   +   R+R RS  R R       RS SP R+ RGSP Y
Sbjct: 198 GPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSPRY 237

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BLAST of CmaCh16G009280 vs. TrEMBL
Match: A0A0A0L2A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063650 PE=4 SV=1)

HSP 1 Score: 585.5 bits (1508), Expect = 5.8e-164
Identity = 328/415 (79.04%), Postives = 339/415 (81.69%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60

Query: 120 GRKGRRLRVEWTKQERGIRRPG------GGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 179
           GRKGRRLRVEWTKQERGIRRPG      GGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120

Query: 180 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVR 239
           TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQ+DATRALELTNMSKLMDRVISVEYAVR
Sbjct: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180

Query: 240 DDDEKRNGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRR 299
           DDD+KRNG+SPDRNRDRSPDRKRRS SPYR+ERGSPDYGNGIS SPYRRQRASPDYGSRR
Sbjct: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240

Query: 300 SPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDH 359
           SPSPYQRERER  GSPDYGRG                     RS                
Sbjct: 241 SPSPYQRERER--GSPDYGRG---------------------RS---------------- 300

Query: 360 GRGRSPNQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDG 419
                PN SPYRRERERSSDH R PSH P HQRERPNDDRV +RS SPYGR R   + DG
Sbjct: 301 -----PNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNRSPSPYGRGREKGSPDG 360

Query: 420 RGSSYSPRDRER-SNPDN----GHDQRLNTVVAEPEPGDSPSYGGTTQSPKHRGY 464
           RG+SYSPRDRER SNPDN    GHDQ+  T+   PEPG+SP+YGG TQSPK RGY
Sbjct: 361 RGTSYSPRDRERSSNPDNGHDHGHDQQQTTI---PEPGESPNYGG-TQSPKRRGY 367

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BLAST of CmaCh16G009280 vs. TrEMBL
Match: A0A0A0L7I3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063660 PE=4 SV=1)

HSP 1 Score: 585.5 bits (1508), Expect = 5.8e-164
Identity = 324/407 (79.61%), Postives = 335/407 (82.31%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDER+AEDAI ALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIHALDRREF 60

Query: 120 GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDL 179
           GRKGRRLRVEWTKQERGIRRP GGGGG GGGSRRSSTNTRPSKTLFVINFDPYHTR RDL
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPSGGGGGSGGGSRRSSTNTRPSKTLFVINFDPYHTRIRDL 120

Query: 180 ERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEKR 239
           ERHFDPYGKIL+VRIRRNFAFVQYELQ+DATRALE+TNMSKLMDRVISVEYAVRDDDEKR
Sbjct: 121 ERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEVTNMSKLMDRVISVEYAVRDDDEKR 180

Query: 240 NGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRRSPSPYQ 299
           NG+SPDRNRDRSPDRKRRSPSPYR+ERGSPDYGNGIS SPYRRQRASPDYGSRRSPSPYQ
Sbjct: 181 NGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQ 240

Query: 300 RERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDHGRGRSP 359
           RERER  GSPDY RG                     RS                     P
Sbjct: 241 RERER--GSPDYSRG---------------------RS---------------------P 300

Query: 360 NQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPY--GRERGSPTTDGRGSS 419
             SPYRRERERSSDH RAPSHSPPHQRERPNDDR+ +RS SPY   RERGSP   GRG S
Sbjct: 301 KHSPYRRERERSSDHIRAPSHSPPHQRERPNDDRIPNRSPSPYRRERERGSP-IGGRGRS 358

Query: 420 YSPRDRERSNPDNGHDQRLNTVVAEPEPGDSPSYGGTTQSPKHRGYS 465
           YSPRDRER NPDNGHD + NTV    EPG+ PSY G TQSPKHRGY+
Sbjct: 361 YSPRDRERLNPDNGHDHQENTVA---EPGECPSYSG-TQSPKHRGYN 358

[Close]

BLAST of CmaCh16G009280 vs. TrEMBL
Match: W9S7E2_9ROSA (Arginine/serine-rich-splicing factor RSP40 OS=Morus notabilis GN=L484_015733 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 1.1e-133
Identity = 284/413 (68.77%), Postives = 324/413 (78.45%), Query Frame = 1


Query: 58  GSMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRR 117
           G M+PIFCGNFEYDARQ DLERLF RYGKVDRVDMKSGFAFIYMED+RDAEDAIRALDRR
Sbjct: 175 GKMRPIFCGNFEYDARQSDLERLFGRYGKVDRVDMKSGFAFIYMEDDRDAEDAIRALDRR 234

Query: 118 EFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTR 177
           EFGRKGRRLRVEWTKQERGIRRPGG        S++SS N RPSKTLFVINFDPYHTRT+
Sbjct: 235 EFGRKGRRLRVEWTKQERGIRRPGG--------SKKSSANNRPSKTLFVINFDPYHTRTK 294

Query: 178 DLERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDE 237
           DLERHFD YGKI+SVRIRRNFAFVQYE Q+DAT+ALE TNMSKLMDRVISVEYAVRDDDE
Sbjct: 295 DLERHFDQYGKIVSVRIRRNFAFVQYESQEDATKALEATNMSKLMDRVISVEYAVRDDDE 354

Query: 238 KRNGFSPDRNRDRSPDR---KRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRRS 297
           +++G+SPDR+RDRS +R   +RRSPSPYR+ERGSPDYG G SP  YRR+R SPDYG  RS
Sbjct: 355 RKDGYSPDRSRDRSLERGRDRRRSPSPYRRERGSPDYGRGSSPGAYRRERGSPDYGRGRS 414

Query: 298 PSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDHG 357
           PSPY    ++ER SPDYGRGRSP  SPYRRER   +DHGRG S  +SP RRE+  +    
Sbjct: 415 PSPY----KKERASPDYGRGRSP--SPYRRER-AGADHGRGSS--RSPNRREKVSA---D 474

Query: 358 RGRSPNQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGR 417
           RG  P+ SPYRRE+  S+D  R  S S P+ RER + D  RD S SPY R R SP  +GR
Sbjct: 475 RGHGPSHSPYRREKV-SADRGRDRSRS-PYGRERGSPDDGRDPSASPYRRRRASP-ENGR 534

Query: 418 GSSYSPRDRERSNPDNGHDQRLNTVVAEPEPGDSPSYGGTTQSPKHRGYSRLN 468
           G S+SP +RER+  DNG +   N+V   P+P DSP+YGG  +SP +  Y  ++
Sbjct: 535 GPSHSPLERERAEIDNGREPSPNSV---PDPRDSPNYGG-PESPMNERYQSMS 560

[Close]

BLAST of CmaCh16G009280 vs. TrEMBL
Match: A0A061G7R5_THECC (Arginine/serine-rich splicing factor 35 OS=Theobroma cacao GN=TCM_015090 PE=4 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 3.6e-129
Identity = 276/407 (67.81%), Postives = 320/407 (78.62%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           M+PIFCGNFEYDARQ DLERLF +YG+V+RVDMKSGFAFIYMEDERDAEDAIRALDR EF
Sbjct: 1   MRPIFCGNFEYDARQSDLERLFRKYGRVERVDMKSGFAFIYMEDERDAEDAIRALDRTEF 60

Query: 120 GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDL 179
           GRKGRRLRVEWTKQERGIRRPGGG       SRRSS NTRPSKTLFVINFDPYHTRTRDL
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPGGG-------SRRSSANTRPSKTLFVINFDPYHTRTRDL 120

Query: 180 ERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEKR 239
           ERHF+ YGKI+SVRIRRNFAFVQY+ QDDATRALE TNMSKL DRVISVEYAVRDDDE+R
Sbjct: 121 ERHFESYGKIVSVRIRRNFAFVQYDSQDDATRALEATNMSKLTDRVISVEYAVRDDDERR 180

Query: 240 NGFSPDRNRDRSPDR---KRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRRSPS 299
           NG+SPDR+RDRSP+R   KRRSPSPYR+ERGSPDYG G S SPYR++R SPDYG  RSPS
Sbjct: 181 NGYSPDRSRDRSPERGRDKRRSPSPYRRERGSPDYGRGSSRSPYRKERGSPDYGRGRSPS 240

Query: 300 PYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDHGRG 359
           PY+R+R     SP+YGRG S  +SPYRRER   +DH RG S  +SPYR+ER  S ++GRG
Sbjct: 241 PYKRDRV----SPEYGRGTS--RSPYRRERA-GADHARGSS--RSPYRKERA-SPENGRG 300

Query: 360 RSPNQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGRGS 419
             P+ SPYRRE+  S+++ R+PSHS P++RERP+ D                   +GRG 
Sbjct: 301 --PSNSPYRREKH-SAENDRSPSHS-PYRRERPSSD-------------------NGRGP 360

Query: 420 SYSPRDRERSNPDNGHDQRLNTVVAEPEPGDSPSYGGTTQSPKHRGY 464
           S+SP +R+R++P+NG     +++   PE  DSP YGG  +SP +  Y
Sbjct: 361 SHSPYERDRASPENGRGPSPSSM---PEGRDSP-YGGGAESPVNERY 363

[Close]

BLAST of CmaCh16G009280 vs. TrEMBL
Match: V4S432_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005021mg PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 1.8e-128
Identity = 276/412 (66.99%), Postives = 308/412 (74.76%), Query Frame = 1


Query: 55  FGSGSMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRAL 114
           F    M+PIFCGNFEYDARQ DLERLF RYGKVDRVDMKSGFAFIYM+DERDAEDAIR L
Sbjct: 50  FEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGL 109

Query: 115 DRREFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHT 174
           DR EFGRKGRRLRVEWTK ERGIRRPGGG       +RR STNTRPSKTLFVINFDPYHT
Sbjct: 110 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSS-----ARRPSTNTRPSKTLFVINFDPYHT 169

Query: 175 RTRDLERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRD 234
           RTRDLERHF+PYGKI+SVRIRRNFAFVQYE+Q+DATRAL+ TNMSKL DRVISVEYAVRD
Sbjct: 170 RTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 229

Query: 235 DDEKRNGFSPDRNRDRSPDR-KRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRR 294
           DD++RNG SPDRNRDRSPDR +RRSPSPYR+ERGSPDYG G S SPYRR+R SPDYG  R
Sbjct: 230 DDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVR 289

Query: 295 SPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDH 354
           SPSPY+    R+RGSPDYGR  S  +SPY++ER   +  G GR P++SPYRR+R  S ++
Sbjct: 290 SPSPYR----RDRGSPDYGRNSS--RSPYKKER---AAIGHGRGPSRSPYRRDR-GSPEN 349

Query: 355 GRGRSPNQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDG 414
           G G SP  SPYR                    + +P+ +  R  SRSPY RER SP  +G
Sbjct: 350 GHGSSP--SPYR--------------------KGKPSPNNGRGPSRSPYERERPSP-ENG 409

Query: 415 RGSSYSPRDRERSNPDNGHDQRLNTVVAEPEPGDSPSYGGTTQSPKHRGYSR 466
           RG S SP  RER +PDNG     N++   PEP DSP Y G       R  SR
Sbjct: 410 RGGSRSPYRRERPSPDNGRVPSPNSM---PEPRDSPGYDGADSPINERYRSR 420

[Close]

BLAST of CmaCh16G009280 vs. TAIR10
Match: AT4G25500.1 (AT4G25500.1 arginine/serine-rich splicing factor 35)

HSP 1 Score: 379.4 bits (973), Expect = 3.2e-105
Identity = 230/366 (62.84%), Postives = 274/366 (74.86%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDERDAEDAIRALDR EF
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 120 GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDL 179
           GRKGRRLRVEWTK ERG      G    GGGSRRSS++ RPSKTLFVINFD  +TRTRDL
Sbjct: 61  GRKGRRLRVEWTKSERG------GDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDL 120

Query: 180 ERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEKR 239
           E+HF+PYGKI++VRIRRNFAF+QYE Q+DATRAL+ +N SKLMD+VISVEYAV+DDD + 
Sbjct: 121 EKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARG 180

Query: 240 NGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISP-SPYRRQRASPDYGSRRSPSPY 299
           NG SP+R RDRSP+R+RRSPSPY++ERGSPDYG G SP + YR++R SPDYG RRSPSPY
Sbjct: 181 NGHSPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPY 240

Query: 300 QRERERERGSPDYGRGRSPNQSPYRRER-------ERSSDHGRGR-SPNQSPYRRERERS 359
           ++ R   RGSP+YGR R  N SP RRER        RS ++ R R SPN SP+++E  R+
Sbjct: 241 KKSR---RGSPEYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKESPRN 300

Query: 360 RDHGRGRSPNQSPY-RRERERSS-DHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERG- 413
                G    +SP  RRER RSS ++ +  S   P    R + D   D + SP  + R  
Sbjct: 301 -----GVGEVESPIERRERSRSSPENGQVES---PGSIGRRDSDGGYDGAESPMQKSRSP 349

[Close]

BLAST of CmaCh16G009280 vs. TAIR10
Match: AT5G52040.2 (AT5G52040.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 373.2 bits (957), Expect = 2.3e-103
Identity = 223/359 (62.12%), Postives = 259/359 (72.14%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDERDAEDAIRALDR E+
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 120 GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDL 179
           GR GRRLRVEWTK +RG       G G  GGSRRSS+  RPSKTLFVINFD  +TRTRDL
Sbjct: 61  GRTGRRLRVEWTKNDRG-------GAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDL 120

Query: 180 ERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEKR 239
           ERHF+PYGKI++VRIRRNFAF+QYE Q+DATRAL+ TN SKLMD+VISVEYAV+DDD + 
Sbjct: 121 ERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRG 180

Query: 240 NGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYG-SRRSPSPY 299
           NG+SP+R RDRSPDR+RRSPSPYR+ERGSPDYG G SP  ++R+R SPDYG  RRSPSPY
Sbjct: 181 NGYSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPY 240

Query: 300 QRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDHGRGRS 359
           +R R     SPDY R         RRER  S ++G  R  N+SP +         GRG S
Sbjct: 241 KRARL----SPDYKR------DDRRRERVASPENGAVR--NRSPRK---------GRGES 300

Query: 360 PNQSPYRRERERSSD---HARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDGR 415
            +  PY + RE  S      R  S SPP   +R    R R RSRS    E G   + G+
Sbjct: 301 RSPPPYEKRRESRSPPPYEKRRESRSPPPYEKR----RERSRSRSKSSPENGQVESPGQ 327

[Close]

BLAST of CmaCh16G009280 vs. TAIR10
Match: AT3G61860.1 (AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 274.2 bits (700), Expect = 1.5e-73
Identity = 159/285 (55.79%), Postives = 195/285 (68.42%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           M+P+F GNFEY+ RQ DLERLF +YG+VDRVDMKSG+AF+Y EDERDAEDAIR LD   F
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 120 GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDL 179
           G + RRL VEW K ERG  R          G  ++ +N +P+KTLFVINFDP  T+  D+
Sbjct: 61  GYEKRRLSVEWAKGERGRPR----------GDAKAPSNLKPTKTLFVINFDPIRTKEHDI 120

Query: 180 ERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEKR 239
           E+HF+PYGK+ +VRIRRNF+FVQ+E Q+DAT+ALE T  SK++DRV+SVEYA++DDDE+ 
Sbjct: 121 EKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDER- 180

Query: 240 NGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRRSPSPYQ 299
                DRN  RSP   RRS SP  + R SPDYG    PSP + +R SPDYG  RSP    
Sbjct: 181 ----DDRNGGRSP---RRSLSPVYRRRPSPDYGR--RPSPGQGRRPSPDYGRARSP---- 240

Query: 300 RERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYR 345
            E +R +G   Y R RSP+         RSSD+GR RSP    YR
Sbjct: 241 -EYDRYKGPAAYERRRSPDYG------RRSSDYGRQRSPGYDRYR 254

[Close]

BLAST of CmaCh16G009280 vs. TAIR10
Match: AT2G46610.1 (AT2G46610.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 245.0 bits (624), Expect = 9.4e-65
Identity = 143/282 (50.71%), Postives = 186/282 (65.96%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           M+ ++ GNF+YD R  DLERLFS++G+V RVDMKSG+AF+Y EDERDAEDAIR  D   F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 120 GRKGRRLRVEWTKQERGIR-RPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRD 179
           G   R+L VEW K  +G R +P  G         ++ +N RP+KTLFVINFDP  TR RD
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG---------KAVSNQRPTKTLFVINFDPIRTRERD 120

Query: 180 LERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEK 239
           +ERHF+PYGK+L+VR+RRNFAFVQ+  Q+DAT+AL+ T+ SKL+D+V+SVEYA+R+  E+
Sbjct: 121 MERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGER 180

Query: 240 RNGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRRSPSPY 299
            + ++  R        +RRSPSP  + R SPDY           +R SP+Y   + P+PY
Sbjct: 181 EDRYAGSR--------RRRSPSPVYRRRPSPDY----------TRRRSPEYDRYKGPAPY 240

Query: 300 QRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQ 341
           +R     R SPDYGR      S Y R R RS  + R RSP Q
Sbjct: 241 ER-----RKSPDYGR----RSSDYGRARARSPGYDRSRSPIQ 246

[Close]

BLAST of CmaCh16G009280 vs. TAIR10
Match: AT1G02840.1 (AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-15
Identity = 94/303 (31.02%), Postives = 138/303 (45.54%), Query Frame = 1


Query: 57  SGSMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMK-----SGFAFIYMEDERDAEDAI 116
           S S + ++ GN   D R+ ++E LFS+YG V ++D+K      G+AF+  +D RDAEDAI
Sbjct: 3   SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62

Query: 117 RALDRREFGRKGRRLRVEW-------TKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTL 176
              D  +F   G RLRVE        +   RG    GG GGG G G   S   +R S+  
Sbjct: 63  HGRDGYDF--DGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 122

Query: 177 FVINFDPYHTRTRDLERHFDPYGKILSVRIRRN----FAFVQYELQDDATRALELTNMSK 236
            ++   P     +DL+ H    G +   ++ R+       V Y   +D   AL+  + ++
Sbjct: 123 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 182

Query: 237 LMDRVISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSP- 296
             +   +    VR+ D +++  SP R R  S   K RS S  R    S       S SP 
Sbjct: 183 FRNAFSNGYVRVREYDSRKDSRSPSRGRSYS---KSRSRSRGRSVSRSRSRSRSRSRSPK 242

Query: 297 YRRQRASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPN 343
            +  R SP   + RSP P  + R     SP   R RS ++SP    ++  S      SP 
Sbjct: 243 AKSSRRSPAKSTSRSPGPRSKSR-----SPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPA 295

[Close]

BLAST of CmaCh16G009280 vs. NCBI nr
Match: gi|659096445|ref|XP_008449100.1| (PREDICTED: arginine/serine-rich-splicing factor RSP40-like isoform X1 [Cucumis melo])

HSP 1 Score: 591.7 bits (1524), Expect = 1.2e-165
Identity = 336/418 (80.38%), Postives = 346/418 (82.78%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60

Query: 120 GRKGRRLRVEWTKQERGIRRPGGGGGGGGGG------SRRSSTNTRPSKTLFVINFDPYH 179
           GRKGRRLRVEWTKQERGIRRPGGGGGGGGGG      SRRSSTNTRPSKTLFVINFDPYH
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120

Query: 180 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVR 239
           TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQ+DATRALELTNMSKLMDRVISVEYAVR
Sbjct: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180

Query: 240 DDDEKRNGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRR 299
           DDD+KRNG+SPDRNRDRSPDRKRRSPSPYR+ERGSPDYGNGIS SPYRRQRASPDYGSRR
Sbjct: 181 DDDDKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240

Query: 300 SPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDH 359
           SPSPYQRERER  GSPDYGRG                     RSPN SPYRRERERS DH
Sbjct: 241 SPSPYQRERER--GSPDYGRG---------------------RSPNHSPYRRERERSSDH 300

Query: 360 GRGRSPNQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRER--GSPTT 419
            RG                    APS+ P HQRERPNDDRV +RS SPYGRER  GSP T
Sbjct: 301 VRG--------------------APSNRPTHQRERPNDDRVPNRSPSPYGREREKGSP-T 360

Query: 420 DGRGSSYSPRDRER-SNPDN----GHDQRLNTVVAEPEPGDSPSYGGTTQSPKHRGYS 465
           DGRG+SYSPRDRER SNPDN    GHDQ+ N V   PEPG+SP+Y G TQSPKHRGYS
Sbjct: 361 DGRGTSYSPRDRERSSNPDNGHDHGHDQQQNMV---PEPGESPNY-GDTQSPKHRGYS 370

[Close]

BLAST of CmaCh16G009280 vs. NCBI nr
Match: gi|449463727|ref|XP_004149583.1| (PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis sativus])

HSP 1 Score: 585.5 bits (1508), Expect = 8.4e-164
Identity = 328/415 (79.04%), Postives = 339/415 (81.69%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60

Query: 120 GRKGRRLRVEWTKQERGIRRPG------GGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 179
           GRKGRRLRVEWTKQERGIRRPG      GGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120

Query: 180 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVR 239
           TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQ+DATRALELTNMSKLMDRVISVEYAVR
Sbjct: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180

Query: 240 DDDEKRNGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRR 299
           DDD+KRNG+SPDRNRDRSPDRKRRS SPYR+ERGSPDYGNGIS SPYRRQRASPDYGSRR
Sbjct: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240

Query: 300 SPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDH 359
           SPSPYQRERER  GSPDYGRG                     RS                
Sbjct: 241 SPSPYQRERER--GSPDYGRG---------------------RS---------------- 300

Query: 360 GRGRSPNQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPYGRERGSPTTDG 419
                PN SPYRRERERSSDH R PSH P HQRERPNDDRV +RS SPYGR R   + DG
Sbjct: 301 -----PNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNRSPSPYGRGREKGSPDG 360

Query: 420 RGSSYSPRDRER-SNPDN----GHDQRLNTVVAEPEPGDSPSYGGTTQSPKHRGY 464
           RG+SYSPRDRER SNPDN    GHDQ+  T+   PEPG+SP+YGG TQSPK RGY
Sbjct: 361 RGTSYSPRDRERSSNPDNGHDHGHDQQQTTI---PEPGESPNYGG-TQSPKRRGY 367

[Close]

BLAST of CmaCh16G009280 vs. NCBI nr
Match: gi|778675942|ref|XP_011650503.1| (PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X2 [Cucumis sativus])

HSP 1 Score: 585.5 bits (1508), Expect = 8.4e-164
Identity = 324/407 (79.61%), Postives = 335/407 (82.31%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDER+AEDAI ALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIHALDRREF 60

Query: 120 GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDL 179
           GRKGRRLRVEWTKQERGIRRP GGGGG GGGSRRSSTNTRPSKTLFVINFDPYHTR RDL
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPSGGGGGSGGGSRRSSTNTRPSKTLFVINFDPYHTRIRDL 120

Query: 180 ERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEKR 239
           ERHFDPYGKIL+VRIRRNFAFVQYELQ+DATRALE+TNMSKLMDRVISVEYAVRDDDEKR
Sbjct: 121 ERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEVTNMSKLMDRVISVEYAVRDDDEKR 180

Query: 240 NGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRRSPSPYQ 299
           NG+SPDRNRDRSPDRKRRSPSPYR+ERGSPDYGNGIS SPYRRQRASPDYGSRRSPSPYQ
Sbjct: 181 NGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQ 240

Query: 300 RERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDHGRGRSP 359
           RERER  GSPDY RG                     RS                     P
Sbjct: 241 RERER--GSPDYSRG---------------------RS---------------------P 300

Query: 360 NQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPY--GRERGSPTTDGRGSS 419
             SPYRRERERSSDH RAPSHSPPHQRERPNDDR+ +RS SPY   RERGSP   GRG S
Sbjct: 301 KHSPYRRERERSSDHIRAPSHSPPHQRERPNDDRIPNRSPSPYRRERERGSP-IGGRGRS 358

Query: 420 YSPRDRERSNPDNGHDQRLNTVVAEPEPGDSPSYGGTTQSPKHRGYS 465
           YSPRDRER NPDNGHD + NTV    EPG+ PSY G TQSPKHRGY+
Sbjct: 361 YSPRDRERLNPDNGHDHQENTVA---EPGECPSYSG-TQSPKHRGYN 358

[Close]

BLAST of CmaCh16G009280 vs. NCBI nr
Match: gi|778675939|ref|XP_011650502.1| (PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis sativus])

HSP 1 Score: 585.5 bits (1508), Expect = 8.4e-164
Identity = 324/407 (79.61%), Postives = 335/407 (82.31%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDER+AEDAI ALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIHALDRREF 60

Query: 120 GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDL 179
           GRKGRRLRVEWTKQERGIRRP GGGGG GGGSRRSSTNTRPSKTLFVINFDPYHTR RDL
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPSGGGGGSGGGSRRSSTNTRPSKTLFVINFDPYHTRIRDL 120

Query: 180 ERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEKR 239
           ERHFDPYGKIL+VRIRRNFAFVQYELQ+DATRALE+TNMSKLMDRVISVEYAVRDDDEKR
Sbjct: 121 ERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEVTNMSKLMDRVISVEYAVRDDDEKR 180

Query: 240 NGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRRSPSPYQ 299
           NG+SPDRNRDRSPDRKRRSPSPYR+ERGSPDYGNGIS SPYRRQRASPDYGSRRSPSPYQ
Sbjct: 181 NGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQ 240

Query: 300 RERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDHGRGRSP 359
           RERER  GSPDY RG                     RS                     P
Sbjct: 241 RERER--GSPDYSRG---------------------RS---------------------P 300

Query: 360 NQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPY--GRERGSPTTDGRGSS 419
             SPYRRERERSSDH RAPSHSPPHQRERPNDDR+ +RS SPY   RERGSP   GRG S
Sbjct: 301 KHSPYRRERERSSDHIRAPSHSPPHQRERPNDDRIPNRSPSPYRRERERGSP-IGGRGRS 358

Query: 420 YSPRDRERSNPDNGHDQRLNTVVAEPEPGDSPSYGGTTQSPKHRGYS 465
           YSPRDRER NPDNGHD + NTV    EPG+ PSY G TQSPKHRGY+
Sbjct: 361 YSPRDRERLNPDNGHDHQENTVA---EPGECPSYSG-TQSPKHRGYN 358

[Close]

BLAST of CmaCh16G009280 vs. NCBI nr
Match: gi|659096441|ref|XP_008449098.1| (PREDICTED: arginine/serine-rich-splicing factor RSP40-like isoform X2 [Cucumis melo])

HSP 1 Score: 550.4 bits (1417), Expect = 3.0e-153
Identity = 309/407 (75.92%), Postives = 327/407 (80.34%), Query Frame = 1


Query: 60  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 119
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDER+AEDAI ALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIHALDRREF 60

Query: 120 GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDL 179
           GRKGRRLRVEWTKQERGIRRP GGGGG GGGSRRSS+NTRPSKTLFVINFDPYHTR RDL
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPSGGGGGSGGGSRRSSSNTRPSKTLFVINFDPYHTRIRDL 120

Query: 180 ERHFDPYGKILSVRIRRNFAFVQYELQDDATRALELTNMSKLMDRVISVEYAVRDDDEKR 239
           ERHFDPYGKIL+VRIRRNFAFVQYELQ+DATRALE+TNMSKLMDRVISVEYAVRDDDEKR
Sbjct: 121 ERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEVTNMSKLMDRVISVEYAVRDDDEKR 180

Query: 240 NGFSPDRNRDRSPDRKRRSPSPYRKERGSPDYGNGISPSPYRRQRASPDYGSRRSPSPYQ 299
           NG+SPDRNRDRSPDRKRRSP                  SPYRR+R SPDYG+  S SPY+
Sbjct: 181 NGYSPDRNRDRSPDRKRRSP------------------SPYRRERGSPDYGNGISRSPYR 240

Query: 300 RERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYRRERERSRDHGRGRSP 359
           R+R     SPDYG  RSP  SPY+RERER S                     D+GRGRSP
Sbjct: 241 RQRT----SPDYGSRRSP--SPYQRERERGSP--------------------DYGRGRSP 300

Query: 360 NQSPYRRERERSSDHARAPSHSPPHQRERPNDDRVRDRSRSPY--GRERGSPTTDGRGSS 419
             SPYRRERERSSDH RAPS SP HQRERPN DR+ +RS SPY   RER SP  DGRG+S
Sbjct: 301 KHSPYRRERERSSDHTRAPSRSPLHQRERPNGDRIPNRSPSPYRRERERRSPIDDGRGTS 359

Query: 420 YSPRDRERSNPDNGHDQRLNTVVAEPEPGDSPSYGGTTQSPKHRGYS 465
           YSPRDRERSNPDNGHD + NTV    EPG+ PSY G TQSPKHRGY+
Sbjct: 361 YSPRDRERSNPDNGHDHQENTVA---EPGECPSYSG-TQSPKHRGYN 359

The following BLAST results are available for this feature:

BLAST of CmaCh16G009280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS40_ARATH	5.7e-104	62.84	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 S...	[more]
SRS41_ARATH	3.1e-102	57.14	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana GN=RS41 PE=1 S...	[more]
SRS31_ARATH	2.6e-72	55.79	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 S...	[more]
RS31A_ARATH	1.7e-63	50.71	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana GN=RS31A PE=2...	[more]
SRSF1_HUMAN	2.6e-16	33.63	Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2	[more]

BLAST of CmaCh16G009280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2A0_CUCSA	5.8e-164	79.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063650 PE=4 SV=1	[more]
A0A0A0L7I3_CUCSA	5.8e-164	79.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063660 PE=4 SV=1	[more]
W9S7E2_9ROSA	1.1e-133	68.77	Arginine/serine-rich-splicing factor RSP40 OS=Morus notabilis GN=L484_015733 PE=...	[more]
A0A061G7R5_THECC	3.6e-129	67.81	Arginine/serine-rich splicing factor 35 OS=Theobroma cacao GN=TCM_015090 PE=4 SV...	[more]
V4S432_9ROSI	1.8e-128	66.99	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005021mg PE=4 SV=1	[more]

BLAST of CmaCh16G009280 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25500.1	3.2e-105	62.84	arginine/serine-rich splicing factor 35	[more]
AT5G52040.2	2.3e-103	62.12	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G61860.1	1.5e-73	55.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46610.1	9.4e-65	50.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.1	1.1e-15	31.02	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmaCh16G009280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096445\|ref\|XP_008449100.1\|	1.2e-165	80.38	PREDICTED: arginine/serine-rich-splicing factor RSP40-like isoform X1 [Cucumis m...	[more]
gi\|449463727\|ref\|XP_004149583.1\|	8.4e-164	79.04	PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis sa...	[more]
gi\|778675942\|ref\|XP_011650503.1\|	8.4e-164	79.61	PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X2 [Cucumis sa...	[more]
gi\|778675939\|ref\|XP_011650502.1\|	8.4e-164	79.61	PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis sa...	[more]
gi\|659096441\|ref\|XP_008449098.1\|	3.0e-153	75.92	PREDICTED: arginine/serine-rich-splicing factor RSP40-like isoform X2 [Cucumis m...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G009280.1	CmaCh16G009280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 63..121 score: 2.6E-13coord: 164..226 score: 6.3
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 62..129 score: 1.6E-15coord: 163..229 score: 2.5
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 162..233 score: 14.965coord: 61..133 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 59..134 score: 2.7E-18coord: 149..239 score: 1.7
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 63..236 score: 3.24
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 63..237 score: 7.9E-34coord: 425..458 score: 7.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G009280	Cucurbita maxima (Rimu)	cmacmaB358
CmaCh16G009280	Cucumber (Gy14) v1	cgycmaB0029
CmaCh16G009280	Cucurbita moschata (Rifu)	cmacmoB323
CmaCh16G009280	Cucurbita moschata (Rifu)	cmacmoB345
CmaCh16G009280	Wild cucumber (PI 183967)	cmacpiB333
CmaCh16G009280	Cucumber (Chinese Long) v2	cmacuB327
CmaCh16G009280	Melon (DHL92) v3.5.1	cmameB290
CmaCh16G009280	Watermelon (Charleston Gray)	cmawcgB285
CmaCh16G009280	Watermelon (97103) v1	cmawmB300
CmaCh16G009280	Cucurbita pepo (Zucchini)	cmacpeB345
CmaCh16G009280	Bottle gourd (USVL1VR-Ls)	cmalsiB317
CmaCh16G009280	Cucumber (Gy14) v2	cgybcmaB340
CmaCh16G009280	Melon (DHL92) v3.6.1	cmamedB343
CmaCh16G009280	Silver-seed gourd	carcmaB0676
CmaCh16G009280	Silver-seed gourd	carcmaB0819
CmaCh16G009280	Cucumber (Chinese Long) v3	cmacucB0381
CmaCh16G009280	Watermelon (97103) v2	cmawmbB338
CmaCh16G009280	Wax gourd	cmawgoB0419