CmaCh16G008350 (gene) Cucurbita maxima (Rimu)

NameCmaCh16G008350
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr16 : 4741729 .. 4742831 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCTTCTTCTATTACACAATTTACCTCATCCTTCTCTCTCTTCCACAATCCCTTTGTCTCTCCTCCACCATCCACGACCTCCTCCGCTCGAAGGGGCTGCCGGCCGGGCTTCTTCCGAGGGAGGTAAAATCCTACTCCCTCTCCTAAAACGGCCTTCTGACCAAATTCGAGAACAGGGTTCTGTATGAGAGCGTGGTTAAGGCGAAAGGATTTGAAGCTCTAAGATGAGGACAATTTTGTCTTTTTCTTTTTTGGTCAATTAATTTTGTTTTTTTTAATATATAATTAGTTGAGTTTGGTTATTATTATTATGAATTTATAAATTAATTTTGAGAGTTAGGGATTATTATTTCTTTTATTTAAAAAAAAGGGATAAAAAAAAGCCTCTCTTCACGGGTTGATTTTGCGGGAACGTAGGCTTTGTTGGGAATATGCCGTTTTATTTATTTGTTTATTTTTAATTTTATTGTCCATTAATCCATGATTAATGGGATTTTAACTATAAGAATAAATATTTTATTTATTTGTGGGAACTTGGACTTGAACTCTAAGAATAAATATTTTAAGAAATACTCCAAAAGTGACCCTATTATTGGGGTCGAGTTATGCAAACACATGTAGAATGATCGGACCTATGGTTTGAAAGCAAGAGAGAGAAATTGAGATTGATGTTACATGATTAAGATAATTTTCACACCATTTAGATTTGGGGGAGGTTTTGGCGTGTCAAAGGCAAGTGGCTGCTGGACGGCATGCCTTAAACAAGCATGACCGTGACACCGACCGTGTGGAAGAGGGTCCGGAAGTATATATATACACATAGTACAGTTACATGAGCCTTTGCTTATAAAGAATCTAGCCCTTTAATTTATATGGGTGATAGTGAAGGTGTAGGTCCCACAGAATAAAGAACGGGGAAAAGCATAATAAATAAAGACTGAGAGTAATAACTTAGTCGTGAAGTTGTTATATTCCAGTCTCCAAGTCTTTCCTCCCTTTCGCAAGTTCCCATTGTCATCGCTTCACTTCAACAGTCATTAGGGTTTGAAAGGGAATACACACTTCAGTTCACGCTTTCGCCTAATCACTCTCCGTAA

mRNA sequence

ATGGCCGCCTTCTTCTATTACACAATTTACCTCATCCTTCTCTCTCTTCCACAATCCCTTTGTCTCTCCTCCACCATCCACGACCTCCTCCGCTCGAAGGGGCTGCCGGCCGGGCTTCTTCCGAGGGAGTCTCCAAGTCTTTCCTCCCTTTCGCAAGTTCCCATTGTCATCGCTTCACTTCAACAGTCATTAGGGTTTGAAAGGGAATACACACTTCAGTTCACGCTTTCGCCTAATCACTCTCCGTAA

Coding sequence (CDS)

ATGGCCGCCTTCTTCTATTACACAATTTACCTCATCCTTCTCTCTCTTCCACAATCCCTTTGTCTCTCCTCCACCATCCACGACCTCCTCCGCTCGAAGGGGCTGCCGGCCGGGCTTCTTCCGAGGGAGTCTCCAAGTCTTTCCTCCCTTTCGCAAGTTCCCATTGTCATCGCTTCACTTCAACAGTCATTAGGGTTTGAAAGGGAATACACACTTCAGTTCACGCTTTCGCCTAATCACTCTCCGTAA

Protein sequence

MAAFFYYTIYLILLSLPQSLCLSSTIHDLLRSKGLPAGLLPRESPSLSSLSQVPIVIASLQQSLGFEREYTLQFTLSPNHSP
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007493DUF538
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G008350.1CmaCh16G008350.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007493Protein of unknown function DUF538unknownSSF141562At5g01610-likecoord: 6..43
score: 2.7

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G008350Carg24836Silver-seed gourdcarcmaB1099
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G008350Cucumber (Gy14) v2cgybcmaB084
CmaCh16G008350Cucumber (Gy14) v2cgybcmaB341
CmaCh16G008350Melon (DHL92) v3.6.1cmamedB330
CmaCh16G008350Melon (DHL92) v3.6.1cmamedB345
CmaCh16G008350Silver-seed gourdcarcmaB0946
CmaCh16G008350Silver-seed gourdcarcmaB1243
CmaCh16G008350Cucumber (Chinese Long) v3cmacucB0371
CmaCh16G008350Cucumber (Chinese Long) v3cmacucB0382
CmaCh16G008350Watermelon (97103) v2cmawmbB336
CmaCh16G008350Watermelon (97103) v2cmawmbB343
CmaCh16G008350Wax gourdcmawgoB0421
CmaCh16G008350Cucurbita maxima (Rimu)cmacmaB041
CmaCh16G008350Cucurbita maxima (Rimu)cmacmaB339
CmaCh16G008350Cucurbita maxima (Rimu)cmacmaB350
CmaCh16G008350Cucumber (Gy14) v1cgycmaB0121
CmaCh16G008350Cucumber (Gy14) v1cgycmaB0337
CmaCh16G008350Cucurbita moschata (Rifu)cmacmoB317
CmaCh16G008350Cucurbita moschata (Rifu)cmacmoB324
CmaCh16G008350Cucurbita moschata (Rifu)cmacmoB328
CmaCh16G008350Cucurbita moschata (Rifu)cmacmoB337
CmaCh16G008350Wild cucumber (PI 183967)cmacpiB324
CmaCh16G008350Wild cucumber (PI 183967)cmacpiB334
CmaCh16G008350Cucumber (Chinese Long) v2cmacuB318
CmaCh16G008350Cucumber (Chinese Long) v2cmacuB328
CmaCh16G008350Melon (DHL92) v3.5.1cmameB292
CmaCh16G008350Watermelon (Charleston Gray)cmawcgB283
CmaCh16G008350Watermelon (Charleston Gray)cmawcgB294
CmaCh16G008350Watermelon (Charleston Gray)cmawcgB298
CmaCh16G008350Watermelon (97103) v1cmawmB298
CmaCh16G008350Watermelon (97103) v1cmawmB306
CmaCh16G008350Cucurbita pepo (Zucchini)cmacpeB337
CmaCh16G008350Cucurbita pepo (Zucchini)cmacpeB350
CmaCh16G008350Cucurbita pepo (Zucchini)cmacpeB356
CmaCh16G008350Cucurbita pepo (Zucchini)cmacpeB362
CmaCh16G008350Bottle gourd (USVL1VR-Ls)cmalsiB315