CmaCh16G008280 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGATGAAAGAGTCAGAAAATGTATTTGACTACATTACACGTGTACAGACCGTGGCGAATCAGCTAAATCAGAACGGAGAAATGTTACCCGAGACGCAGGCTGTGGAGAAAATCCTAAGGTCGTTAACAGACAACTTCGAGAATGTCGTATGTGCAATAGAAGAGTTGAAGGACCTAGCGAAGTTCACAGTCGATGAGCTTCCCGGTTCTCTCGAGGCACACGAGCAACGTAAGAAAAAGGAGGAGTCACTCGATCAAGCACTTCAGACGAAGGCGTCGATAAAGGATGGAAAAATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGAGAGCCGCGGGAATGGTCAAGCTGCTCAAGGTAATAGTCACGAAGAAAACTACCAGGAGAAGAGACTATCGAGCCATGCAAATTGGGATTGAAGAGGACGTATTCAAGGGCGCGGTCAAGGATACAATTCTAACATCCAGTGCTTTAAATGTAAAAAATATGGTCATTACGTGAATGATTGTAATTCTAACAGATGTTACAATGGTGGCAAAATGGGTCAGTATGAAAGATTGTCGAGCCAAAGAGAAGGTGGAAGAAACCATCAACCTAGCCTTGGATGACACAACAAGTGGAGGCATCCTCTTGATGGCCTAA ATGAAGATGAAAGAGTCAGAAAATGTATTTGACTACATTACACGTGTACAGACCGTGGCGAATCAGCTAAATCAGAACGGAGAAATGTTACCCGAGACGCAGGCTGTGGAGAAAATCCTAAGGTCGTTAACAGACAACTTCGAGAATGTCGTATGTGCAATAGAAGAGTTGAAGGACCTAGCGAAGTTCACAGTCGATGAGCTTCCCGGTTCTCTCGAGGCACACGAGCAACGTAAGAAAAAGGAGGAGTCACTCGATCAAGCACTTCAGACGAAGGCGTCGATAAAGGATGGAAAAATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGAGAGCCGCGGGAATGGTCAAGCTGCTCAAGATGTTACAATGGTGGCAAAATGGGTCAGTATGAAAGATTGTCGAGCCAAAGAGAAGGTGGAAGAAACCATCAACCTAGCCTTGGATGACACAACAAGTGGAGGCATCCTCTTGATGGCCTAA ATGAAGATGAAAGAGTCAGAAAATGTATTTGACTACATTACACGTGTACAGACCGTGGCGAATCAGCTAAATCAGAACGGAGAAATGTTACCCGAGACGCAGGCTGTGGAGAAAATCCTAAGGTCGTTAACAGACAACTTCGAGAATGTCGTATGTGCAATAGAAGAGTTGAAGGACCTAGCGAAGTTCACAGTCGATGAGCTTCCCGGTTCTCTCGAGGCACACGAGCAACGTAAGAAAAAGGAGGAGTCACTCGATCAAGCACTTCAGACGAAGGCGTCGATAAAGGATGGAAAAATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGAGAGCCGCGGGAATGGTCAAGCTGCTCAAGATGTTACAATGGTGGCAAAATGGGTCAGTATGAAAGATTGTCGAGCCAAAGAGAAGGTGGAAGAAACCATCAACCTAGCCTTGGATGACACAACAAGTGGAGGCATCCTCTTGATGGCCTAA MKMKESENVFDYITRVQTVANQLNQNGEMLPETQAVEKILRSLTDNFENVVCAIEELKDLAKFTVDELPGSLEAHEQRKKKEESLDQALQTKASIKDGKILYSQNFRGRDSESRGNGQAAQDVTMVAKWVSMKDCRAKEKVEETINLALDDTTSGGILLMA
BLAST of CmaCh16G008280 vs. TrEMBL
Match: A0A059QBK0_PHAVU (Polyprotein OS=Phaseolus vulgaris PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 9.3e-37 Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 1
BLAST of CmaCh16G008280 vs. TrEMBL
Match: A0A151QZS0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_043206 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 3.3e-34 Identity = 92/175 (52.57%), Postives = 120/175 (68.57%), Query Frame = 1
BLAST of CmaCh16G008280 vs. TrEMBL
Match: A0A151S6I6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_027832 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 3.3e-34 Identity = 92/175 (52.57%), Postives = 120/175 (68.57%), Query Frame = 1
BLAST of CmaCh16G008280 vs. TrEMBL
Match: A0A151RAL1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_039019 PE=4 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 4.3e-34 Identity = 92/175 (52.57%), Postives = 119/175 (68.00%), Query Frame = 1
BLAST of CmaCh16G008280 vs. TrEMBL
Match: A0A151TA96_CAJCA (Gag polyprotein OS=Cajanus cajan GN=KK1_018540 PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 1.4e-32 Identity = 92/191 (48.17%), Postives = 122/191 (63.87%), Query Frame = 1
BLAST of CmaCh16G008280 vs. NCBI nr
Match: gi|545693870|gb|AGW47867.1| (polyprotein [Phaseolus vulgaris]) HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36 Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 1
BLAST of CmaCh16G008280 vs. NCBI nr
Match: gi|1012323647|gb|KYP35753.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]) HSP 1 Score: 152.9 bits (385), Expect = 4.7e-34 Identity = 92/175 (52.57%), Postives = 120/175 (68.57%), Query Frame = 1
BLAST of CmaCh16G008280 vs. NCBI nr
Match: gi|1012339123|gb|KYP50361.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]) HSP 1 Score: 152.9 bits (385), Expect = 4.7e-34 Identity = 92/175 (52.57%), Postives = 120/175 (68.57%), Query Frame = 1
BLAST of CmaCh16G008280 vs. NCBI nr
Match: gi|1012327988|gb|KYP39660.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]) HSP 1 Score: 152.5 bits (384), Expect = 6.2e-34 Identity = 92/175 (52.57%), Postives = 119/175 (68.00%), Query Frame = 1
BLAST of CmaCh16G008280 vs. NCBI nr
Match: gi|1012352765|gb|KYP63953.1| (Gag polyprotein [Cajanus cajan]) HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32 Identity = 92/191 (48.17%), Postives = 122/191 (63.87%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |