CmaCh16G006780 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G006780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pre-rRNA-processing protein TSR3
Location	Cma_Chr16 : 3529697 .. 3534486 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACTAAACATAAAACCTTGTGTCTTGGAGAAAGCGTTCGTCCGGCGCCGTCATGTACTAGTTCCGCCGCATCTGTGGACGGCGATACCAAATCAGCGAAGCCATTCTCAAAAAGGAAAGGAAAACAAAATAATGAAGCCGCGTAATACCTGACTAGAGACGCAGAGAAAAAGAGAACCCAGAAGCCCCGATTCCCACTTTACTAATCTGCTTCAGAATGAGTCACAACAAGCCTAGACGCTTCAAAAATCATCATCCGCGGCGCGGACAATCTTCTCGAGGCCATAAATTTATTGGGTAACTACACATACACTTACCCTTTTCCCCCCTGATTCGTCTCTTTGTTATTGCTCATTTGCTTTCTTTTTGGGCTTTTTCAGAGAGGACGAGTGTTTGCCAATCGACCCAGGTGCCTATTTTATCTGTGATTTAGTTGTGTTTATAGAAGCCCCATTATGGTGGAGGGGCATTGAATTTAGGTGCTTGATGAGTTCCTTTGTGTTGCAGACAATGAAGAGGAGCTAGCAGTACCAAAAATTCAGCTTGCCATGTGGGTGTGTAATGAACCCTTTTCTTAAGCTTACAAAACTGTTTGTAATCTGAAATTGATGGTGTTTTGCTGTTGATTCAGGATTTTGGGCAGTGTGATGCAAAAAGGTGCACAGGACGCAAACTCGCACGATTTGGCTTGTTAAAAGAAAGTACCTAATTATCTCCTTTTCTTTTATATTCATATTTTAAACTATGTTGCTCATATCCACTCTCTACTTCATTAATGATTATACAAAATGTCTTGTTGGATGTATTGGCTTAGTTCTATATGATCTTGCCGGGAATTTTGAAAATATGTTCGCATGTGATGATTGGTATTGATATGAATATGATATTTTGGAAAACAGGAATGGAAGTCTATAGAAAAATAGGTTGTATTGTGATTAAATGCTGAAGGAAATCTAATGTTAGATGGTTTAGATCATAAAAGTTGCAACTTGCAAAATCAGGGACCAAATGAAATACTAAAAACTAAGGAAAAAAAGTACAGTTTGCTTGAATTATTTCTAAGTTGCTTCATCAAATGAGGTTGTATGGTTTAAAACTAAATGAATAATCTGATGCATGCTCGTTTAAGGTTTTAGTTGGATTTCTTTCTACATATAAAAAAATTATCTAACTTCTATTGAATTCGTGCAGGATTTGCGTGTTAACAGTGGGTTTGGAGGCATTGTCTTAAGGTACTGTGAACAATTATGTTTCCTAGTGTACTAGTTGTAGCTAGACTAATACTGCCACAAGAAATTGCTTTCCTGAGTGTTGAGGAATTTTGAATTTGTTTGCTGTCTGAATGGAGGTACTTTTCTATTATTGTTGGGTGTTGTGAAGTCATCTTTGACATTTGGTGCTAATTTCCAGTAATCTGTTTGTTTTGAATGGCTTTGTGATGGAATACTTTTGAGTGAATATCTGCACGTGTCTCTAAAGAATCAAGGCTGGCTTGTAGGGGTGACCTCTAGACCAATCATTTGTTCTGAGGAGGAATCAAGGGTCCATTGGTTGATTGATTGATTAAATTGTGAGATCCCACATTGGTTGGAGAGGGGAATGAAGTATTGCTTATAAGGGTGTGGAGACCTCTTCTTAGTAGATGCGTTTTAAAATCGTGAGGTTGACAACAATACGTAACAGACCAAAGAAAAGAATATTTGCTAGAGGTGGGCTTGGGTTGTTACAAATGGTATCACAGTTAGTCACCGGGCAGTGTGCCAGCGAGAATGTTGGTCCACAAGGGGGGTGGATTGTGAGATTCCACATTGCTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACTCTCCTTAGCAGACACGTTTTAAGACCGTAAGGCCAACAACAATACGTAACGAGTCAAAATGAATAATATTTGCTAGCGGTGGGGCTTGGGCTGTTACATGAATGAATGAAACATATATGAAAGGAAAGGATGGGAGACCATGGACCATATAAAGGCTTCCATCATAAGAGCCGAGTGCTTATAAGCAAAAAGGGGAAAATGTAAGAGGTGGCTATGAGATTCTGAGCTCTTGCAGAGGAAATGTTCTCACTAGAGTATAGCTATTCGTTAGTGAATGTGTGGTCTATGAACTAGCTAAGTACTTTGTTTAGCCCTTACTCTGTTACAACCTTTGCCCATTTCATAATGTATTGACTAAATTCTGACTCAAAGGCTTGTGAACCTTTTGCTGGTATTTTGAACCTCTTCAATCTGAAAATTTTTGCAGTCCAGTGGGGGTGAATTGTGTCTCTAAAGAAGATCATAGTCTTCTTAAACAAAGAGGCTTAGCCGTTGTGGATTGCTCATGGGCACGTCTCGGTGATGTTCCATTTGTGAAGTTGCGTTGTGGTGCTCCTCGCCTATGTAAGAGATTTACATTCTGAATATGAAATTTTTGTGTAGTTCTTAACATTACTGTTATATGATTTTTAATGTTTTTCTAAACTACGATGGAGATTTCACTAAGTTTATTGAAGTGAATTTTCCTGGCAAGACTCTATTTGGTTGACTTAGGCAATGACTATAATTATTATATGATGGTTTTTTCTCCTGATTCTGATTTTCACTTTCTGCAAATATTGTAGTACCTTGGCTAGTAGCAGCAAACCCAGTAAATTACGGTCGACCATGTGAGTTATCTTGTGTCGAAGCGTTAGCCGCCGCTCTAATCATATGGTAACACGATCTCTATGTCATCTCTTCTCATGTGTGCCTGTTGGTTTCTAGATTCTTCTGAGATTTATGTCGATTACTTATCTCATGTCGTTGGTATATCCTTTTGTCATAAATTTGGTGTAATAATCAGCTTACAAAAAAAAATCTCGTTGTAGATCTACTCATCATCTAAAATTTATAAGGGGTTGTACATCGTTTATTACAATATGCCGGTTAGATCTCACATTGGTTGGAAAAGAGACGAAACATTCCTTATAAAGGTGTGGAAACCTTTCCCTAGCAGATGTGTTTTGAAACCTTGAGGAAGCTCAGAAGGGAAAACCCAAAAAGGACAATATTTACTAGCCACGGGTCTGGGTTGTTACAAATGGTATCAGAGCTAGACTCCGGGCGTTGTGCCAGCGAGGACGCTGGACCCTCAAGGGGGTGGATTGTGAGATCCCACATTGGTTGAAGAGGAGAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGAAGTTTGCTTTATGGTTTTGTTAATGTCAACTCTCTGCTTATCACGTTTCTTTCTTGATGTTTGAACTTTTCATAGCTGGAAATATGATTATCTGTTGGTGTAATTGAGCAAGCTTTTTGTCCATTTTGTTTAACTTTTTCTATTGAACTGAACCAACAGTGGAGAAGGGGAAACAGCAGATTTGTTGCTTGGTAAGTTCAAGTGGGGCCATGCTTTTCTTTCCGTTAATAGGTATGTTTTATCGATTACCTAAGCATACCTACCGCTTCATATGTAATAGAGCTGGTTTGAAATGACTTTCTAAGTGCTTAAAAACACTCGGAAATACTTTGTTAAAGCACTTAAAGTGTAAAAAGGAGTGGAGTTCAAGGCTTGTAAATTACTATCATATGAGCTTTTTTCTATATCAATGCTTGCTAATTCCTCTTCGTATCACACAGAGAACTTCTAAAACAATACTCAGCATGCGAGAATAGTGCTGATATTATCTCGGTCCAGAATGCTTGGTTATCACAACAACGACAAGTCCCGAAGGAACCTCGTATTGTAGAAGGTATTCTTTTGAACTAAGTACATCCGTCTCATGTTTATTTTGCGCCTTAATTTGGAAAAAAATGTGTGGAGAAATCGTTGGATATAGAAGAGAAAAACGGCACAAGTATTTCAAATTTGCATCTCGTAGTTATGAAGGACATGTAAGTATCTAAATCTACGTCCAATAGTTATGTAGACACAATCGTAGCACTCTCGTGGAATAGATTGTCAAATATGTGTCGGTATAAAACGATCCGAATTGACAAAAGGCAACAGCCAACATCATCTAACCAAACCAAACCGACCAGCTGTTTTTGGTCGTTCTACATTTTAGAAAACCAAACAACTTGGGCTAAACCAATGGAGGGTAATGGCTTTTCATTTGGAAGTAGGGTCGTTTTCTAGTACTAGTTAGGGTTTAACTCGAACGAATGATGAGTTGTATGTTGTAGGTGCAGAAAAGTCATCTGTGAGCGAAGACGATGAGGGTTCCGACGATTCGGAGGATGGACTTCCACCATTGGAGAAGAACCTAAATCACTTGACCTTGCAGCAAGACAGCGACGAAGAAAGCGAGTAAAAATCGATACCATAGGGACAAAACTTTGATCTAGAGACCAAACACTTTCTACAAAGTCTAGGTTTCTTCTATGTTGCATTGCCTTTTTACTTAATAGAAGTACTAGCTCCTTTGGAGCTGTGTAATCTTTTTATCTTTTTTTTTTTCTTGTATTTATATCCCAGCGTTCCTAATAAGTAGGCCATTTGCATTTGCATTCGATGTGAGACTCTCAAATCCACCCCCTTCGGGTTCCAGTGTCTTTGTTGGCACATCGCCTTTTGTCCACCTCCTTTAAGGTTCGGCCTCCTCGCTGACATATCGCATGGTGTCTATCTCTGCTATCATCTATAATGGTCTAACCTCATTGCTAGTCGATATTGTCTTCTTTGGACTTTTCCTCAAAGTTTAAAAACGCGTATGTTTCCACACTTCATAAGAATATTTCGTTTTCTTCCTC

mRNA sequence

CTACTAAACATAAAACCTTGTGTCTTGGAGAAAGCGTTCGTCCGGCGCCGTCATGTACTAGTTCCGCCGCATCTGTGGACGGCGATACCAAATCAGCGAAGCCATTCTCAAAAAGGAAAGGAAAACAAAATAATGAAGCCGCGTAATACCTGACTAGAGACGCAGAGAAAAAGAGAACCCAGAAGCCCCGATTCCCACTTTACTAATCTGCTTCAGAATGAGTCACAACAAGCCTAGACGCTTCAAAAATCATCATCCGCGGCGCGGACAATCTTCTCGAGGCCATAAATTTATTGGAGAGGACGAGTGTTTGCCAATCGACCCAGACAATGAAGAGGAGCTAGCAGTACCAAAAATTCAGCTTGCCATGTGGGATTTGCGTGTTAACAGTGGGTTTGGAGGCATTGTCTTAAGTCCAGTGGGGGTGAATTGTGTCTCTAAAGAAGATCATAGTCTTCTTAAACAAAGAGGCTTAGCCGTTGTGGATTGCTCATGGGCACGTCTCGGTGATGTTCCATTTGTGAAGTTGCGTTGTGGTGCTCCTCGCCTATTACCTTGGCTAGTAGCAGCAAACCCAGTAAATTACGGTCGACCATGTGAGTTATCTTGTGTCGAAGCGTTAGCCGCCGCTCTAATCATATGTGGAGAAGGGGAAACAGCAGATTTGTTGCTTGGTAAGTTCAAGTGGGGCCATGCTTTTCTTTCCGTTAATAGAGAACTTCTAAAACAATACTCAGCATGCGAGAATAGTGCTGATATTATCTCGGTCCAGAATGCTTGGTTATCACAACAACGACAAGTCCCGAAGGAACCTCGTATTGTAGAAGGTGCAGAAAAGTCATCTGTGAGCGAAGACGATGAGGGTTCCGACGATTCGGAGGATGGACTTCCACCATTGGAGAAGAACCTAAATCACTTGACCTTGCAGCAAGACAGCGACGAAGAAAGCGAGTAAAAATCGATACCATAGGGACAAAACTTTGATCTAGAGACCAAACACTTTCTACAAAGTCTAGGTTTCTTCTATGTTGCATTGCCTTTTTACTTAATAGAAGTACTAGCTCCTTTGGAGCTGTGTAATCTTTTTATCTTTTTTTTTTTCTTGTATTTATATCCCAGCGTTCCTAATAAGTAGGCCATTTGCATTTGCATTCGATGTGAGACTCTCAAATCCACCCCCTTCGGGTTCCAGTGTCTTTGTTGGCACATCGCCTTTTGTCCACCTCCTTTAAGGTTCGGCCTCCTCGCTGACATATCGCATGGTGTCTATCTCTGCTATCATCTATAATGGTCTAACCTCATTGCTAGTCGATATTGTCTTCTTTGGACTTTTCCTCAAAGTTTAAAAACGCGTATGTTTCCACACTTCATAAGAATATTTCGTTTTCTTCCTC

Coding sequence (CDS)

ATGAGTCACAACAAGCCTAGACGCTTCAAAAATCATCATCCGCGGCGCGGACAATCTTCTCGAGGCCATAAATTTATTGGAGAGGACGAGTGTTTGCCAATCGACCCAGACAATGAAGAGGAGCTAGCAGTACCAAAAATTCAGCTTGCCATGTGGGATTTGCGTGTTAACAGTGGGTTTGGAGGCATTGTCTTAAGTCCAGTGGGGGTGAATTGTGTCTCTAAAGAAGATCATAGTCTTCTTAAACAAAGAGGCTTAGCCGTTGTGGATTGCTCATGGGCACGTCTCGGTGATGTTCCATTTGTGAAGTTGCGTTGTGGTGCTCCTCGCCTATTACCTTGGCTAGTAGCAGCAAACCCAGTAAATTACGGTCGACCATGTGAGTTATCTTGTGTCGAAGCGTTAGCCGCCGCTCTAATCATATGTGGAGAAGGGGAAACAGCAGATTTGTTGCTTGGTAAGTTCAAGTGGGGCCATGCTTTTCTTTCCGTTAATAGAGAACTTCTAAAACAATACTCAGCATGCGAGAATAGTGCTGATATTATCTCGGTCCAGAATGCTTGGTTATCACAACAACGACAAGTCCCGAAGGAACCTCGTATTGTAGAAGGTGCAGAAAAGTCATCTGTGAGCGAAGACGATGAGGGTTCCGACGATTCGGAGGATGGACTTCCACCATTGGAGAAGAACCTAAATCACTTGACCTTGCAGCAAGACAGCGACGAAGAAAGCGAGTAA

Protein sequence

MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPRIVEGAEKSSVSEDDEGSDDSEDGLPPLEKNLNHLTLQQDSDEESE

Homology

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BLAST of CmaCh16G006780 vs. Swiss-Prot
Match: TSR3_MOUSE (Ribosome biogenesis protein TSR3 homolog OS=Mus musculus GN=Tsr3 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.5e-42
Identity = 80/145 (55.17%), Postives = 102/145 (70.34%), Query Frame = 1


Query: 54  LRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRLLP 113
           LR++  FGG+VLSPVG   VS  D  L+ Q G+AV+DCSWA+L D PF K+R    RLLP
Sbjct: 87  LRLSQRFGGLVLSPVGTEYVSPADRQLVAQSGVAVIDCSWAKLDDTPFQKMRGSHLRLLP 146

Query: 114 WLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYS 173
           +LVAANPVNYGRPC+LSCVEA AAA  I G  + A +LL KFKWG  FL +NRELL +Y+
Sbjct: 147 YLVAANPVNYGRPCKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNRELLDKYA 206

Query: 174 ACENSADIISVQNAWLSQQRQVPKE 199
           AC    +++  +  +L+  R  P+E
Sbjct: 207 ACRGPEEVLQAEQGYLASTRDTPEE 231

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BLAST of CmaCh16G006780 vs. Swiss-Prot
Match: TSR3_HUMAN (Ribosome biogenesis protein TSR3 homolog OS=Homo sapiens GN=TSR3 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-37
Identity = 86/190 (45.26%), Postives = 114/190 (60.00%), Query Frame = 1


Query: 54  LRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRLLP 113
           LR+   FGG+VLSPVG    S  D  L+ Q G+AV+DCSWARL + PF K+R    RLLP
Sbjct: 87  LRLGHRFGGLVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRGSHLRLLP 146

Query: 114 WLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYS 173
           +LVAANPVNYGRP  LSCVEA AA   I G  + A +LL KFKWG  FL +NR+LL +Y+
Sbjct: 147 YLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNRQLLDKYA 206

Query: 174 ACENSADIISVQNAWLSQQRQVPKEPRI-----VEGAE---------KSSVSEDDEGSDD 230
           AC +  +++  +  +L+  ++ P+E  I       G E          + +  D + SD 
Sbjct: 207 ACGSPEEVLQAEQEFLANAKESPQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDA 266

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BLAST of CmaCh16G006780 vs. Swiss-Prot
Match: TSR3_YEAST (Ribosome biogenesis protein TSR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR3 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-34
Identity = 90/233 (38.63%), Postives = 120/233 (51.50%), Query Frame = 1


Query: 4   NKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWD---------- 63
           NK    KN  P+RG  + GH        + +  DN E++  P ++LAMWD          
Sbjct: 6   NKMHEPKNGRPQRG--ANGHSSRQNHRRMEMKYDNSEKMKFP-VKLAMWDFDHCDPKRCS 65

Query: 64  ------------LRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPF 123
                       LRV   F GIV+SP G   V  +D  +++Q G +VV+CSWARL +VPF
Sbjct: 66  GKKLERLGLIKSLRVGQKFQGIVVSPNGKGVVCPDDLEIVEQHGASVVECSWARLEEVPF 125

Query: 124 VKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAF 183
            K+     RLLP+LVAAN VNYGRP  L+CVEALAA   I G  + A  LL  F WG  F
Sbjct: 126 NKIGGKHERLLPYLVAANQVNYGRPWRLNCVEALAACFAIVGRMDWASELLSHFSWGMGF 185

Query: 184 LSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPRIVEGAEKSSVSEDD 215
           L +N+ELL+ Y  C +   +   +  WL +  +  +E        KS   E+D
Sbjct: 186 LELNKELLEIYQQCTDCDSVKRAEEEWLQKLEKETQE-------RKSRAKEED 228

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BLAST of CmaCh16G006780 vs. Swiss-Prot
Match: TSR3_SCHPO (Ribosome biogenesis protein tsr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr3 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.4e-31
Identity = 65/148 (43.92%), Postives = 90/148 (60.81%), Query Frame = 1


Query: 53  DLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRLL 112
           +LR+   F G+V++P G   VS  D       G +VV+CSWAR+ ++PF ++     RLL
Sbjct: 55  NLRIGQKFRGVVITPNGKVPVSPADKEYFDNGGASVVECSWARIEEIPFSRIGGRCERLL 114

Query: 113 PWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQY 172
           P+LVA+NPVNYGRP  L+C EALAA + I G    A LL+  FKWGH+F  VN ELL  Y
Sbjct: 115 PYLVASNPVNYGRPWRLNCAEALAACMYIVGYPNEARLLMDNFKWGHSFFEVNEELLDIY 174

Query: 173 SACENSADIISVQNAWLSQQRQVPKEPR 201
           + C ++ DI   +  +L +     +E R
Sbjct: 175 AQCHDAQDIQEKEKKYLEEMEASYQEQR 202

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BLAST of CmaCh16G006780 vs. Swiss-Prot
Match: TSR3_METKA (Probable ribosome biogenesis protein MK0638 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0638 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-27
Identity = 61/129 (47.29%), Postives = 80/129 (62.02%), Query Frame = 1


Query: 61  GGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRLLPWLVAANP 120
           G +VL P     +S+ED     +RGL  VDCSW  +        R    R+LP+L+AANP
Sbjct: 37  GAVVLDPTVEKALSREDRDAALERGLVAVDCSWEHVHRYFGPLRRRCRHRILPYLIAANP 96

Query: 121 VNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSAD 180
           VNYG+PC+LS VEALAAAL I G    A+  + +FKWG AFL +NRE L+ Y   E SA+
Sbjct: 97  VNYGKPCKLSTVEALAAALYILGFRREAEEFISRFKWGPAFLELNRERLEAYRRAETSAE 156

Query: 181 IISVQNAWL 190
           ++ VQ  +L
Sbjct: 157 VVRVQEEFL 165

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BLAST of CmaCh16G006780 vs. TrEMBL
Match: A0A0B0NFC9_GOSAR (Probable ribosome biogenesis protein F383_09025 OS=Gossypium arboreum GN=F383_09025 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 6.0e-104
Identity = 195/247 (78.95%), Postives = 217/247 (87.85%), Query Frame = 1


Query: 1   MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDLRVNSGF 60
           M HNKPRRFK H+  RGQSSR H+F  EDE LP D   EEE  +PK+QLAMWDLRVNSGF
Sbjct: 1   MGHNKPRRFKTHNSHRGQSSRNHQFQREDESLPHDQPPEEEPNIPKVQLAMWDLRVNSGF 60

Query: 61  GGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRLLPWLVAANP 120
           GGIVLSPVG  CVSKED++L+K++GLAVVDCSWARL DVPFVKLRCGAPRLLPWLVAANP
Sbjct: 61  GGIVLSPVGSQCVSKEDYNLIKRKGLAVVDCSWARLSDVPFVKLRCGAPRLLPWLVAANP 120

Query: 121 VNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSAD 180
           VNYGRPCELSCVEAL+AAL+ICGE ETA+LLLGKFKWGHAFLS+NRELLK YS CENSAD
Sbjct: 121 VNYGRPCELSCVEALSAALLICGEEETANLLLGKFKWGHAFLSLNRELLKAYSECENSAD 180

Query: 181 IISVQNAWLSQQRQVPK-EPRIVEGAEKSSVSEDDEG-SDDSEDGLPPLEKNLNHLTLQQ 240
           IISVQN+WLSQQRQVPK  P   EGA  S+ SED+EG S+DSEDGLPPLE+N+NHL+L Q
Sbjct: 181 IISVQNSWLSQQRQVPKVPPDAAEGA--SNDSEDEEGSSNDSEDGLPPLERNMNHLSL-Q 240

Query: 241 DSDEESE 246
           +SD+ESE
Sbjct: 241 ESDDESE 244

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BLAST of CmaCh16G006780 vs. TrEMBL
Match: A0A0A0KXU5_CUCSA (Probable ribosome biogenesis protein Csa_4G031030 OS=Cucumis sativus GN=Csa_4G031030 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 1.9e-102
Identity = 187/198 (94.44%), Postives = 192/198 (96.97%), Query Frame = 1


Query: 48  QLAMWDLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCG 107
           +L+  DLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGDVPFVKLRC 
Sbjct: 189 ELSKCDLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCA 248

Query: 108 APRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRE 167
           APRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRE
Sbjct: 249 APRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRE 308

Query: 168 LLKQYSACENSADIISVQNAWLSQQRQVPKEPRIVEGAEKSSVSEDDEGSDDSEDGLPPL 227
           LLKQYSACENSADIISVQNAWLSQQRQVPKEP  VEGA+KSSVSE DEGSDDSEDGLPPL
Sbjct: 309 LLKQYSACENSADIISVQNAWLSQQRQVPKEPHNVEGADKSSVSEHDEGSDDSEDGLPPL 368

Query: 228 EKNLNHLTLQQDSDEESE 246
           EKNLNHLTLQQ+SDEESE
Sbjct: 369 EKNLNHLTLQQESDEESE 386

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BLAST of CmaCh16G006780 vs. TrEMBL
Match: A0A061DIB2_THECC (Probable ribosome biogenesis protein TCM_001191 OS=Theobroma cacao GN=TCM_001191 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 2.7e-96
Identity = 188/267 (70.41%), Postives = 210/267 (78.65%), Query Frame = 1


Query: 1   MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMW-------- 60
           M HNKPRRFK HH  RGQSSR H+F  ED+ LP D   EE+  VPKIQLAMW        
Sbjct: 1   MGHNKPRRFKTHHSHRGQSSRTHQFQREDDSLPPDQPPEEDPNVPKIQLAMWDFGQCDAK 60

Query: 61  --------------DLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGD 120
                         DLRVNSGFGGIVLSPVG  CVSKED+ L+K++GLAVVDCSWARL D
Sbjct: 61  RCTGRKLARFGMLKDLRVNSGFGGIVLSPVGSQCVSKEDYDLMKRKGLAVVDCSWARLSD 120

Query: 121 VPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWG 180
           VPFVKLR GAPRLLPWLVAANPVNYGRPC+LSCVEAL+AAL+ICGE ETA+LLLGKFKWG
Sbjct: 121 VPFVKLRGGAPRLLPWLVAANPVNYGRPCQLSCVEALSAALLICGEEETANLLLGKFKWG 180

Query: 181 HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPRIVEGAEKSSVSEDDEGSD 240
           HAFLS+NRELLK YS CENS DIISVQN+WLSQQ QVPK   ++  AE   VSED+  S+
Sbjct: 181 HAFLSLNRELLKAYSECENSGDIISVQNSWLSQQSQVPK---VLPDAE--DVSEDEGSSN 240

Query: 241 DSEDGLPPLEKNLNHLTLQQDSDEESE 246
           DSEDGLPPLE+N+NHL+L Q+SD+ESE
Sbjct: 241 DSEDGLPPLERNMNHLSL-QESDDESE 261

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BLAST of CmaCh16G006780 vs. TrEMBL
Match: A0A0D2QN91_GOSRA (Probable ribosome biogenesis protein B456_003G045400 OS=Gossypium raimondii GN=B456_003G045400 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.3e-93
Identity = 186/257 (72.37%), Postives = 208/257 (80.93%), Query Frame = 1


Query: 1   MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDL------ 60
           M HNKPRRFK H+  RGQSSR H+F  EDE LP D   EEE  VPK+QLAMWD       
Sbjct: 1   MGHNKPRRFKTHNSHRGQSSRNHQFQREDESLPHDQPPEEEPNVPKVQLAMWDFGQCDAK 60

Query: 61  ----RVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPR 120
               R  + FG     PVG  CVSKED++L+K++GLAVVDCSWARL DVPFVKLRCGAPR
Sbjct: 61  RCTGRKLARFG----FPVGSQCVSKEDYNLIKRKGLAVVDCSWARLSDVPFVKLRCGAPR 120

Query: 121 LLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLK 180
           LLPWLVAANPVNYGRPCELSCVEAL+AAL+ICGE ETA+LLLGKFKWGHAFLS+NRELLK
Sbjct: 121 LLPWLVAANPVNYGRPCELSCVEALSAALLICGEEETANLLLGKFKWGHAFLSLNRELLK 180

Query: 181 QYSACENSADIISVQNAWLSQQRQVPK-EPRIVEGAEKSSVSEDDEG-SDDSEDGLPPLE 240
            YS CENSADIISVQN+WLSQQRQVPK  P   EGA  S+ SED+EG S+DSEDGLPPLE
Sbjct: 181 AYSECENSADIISVQNSWLSQQRQVPKVPPDAAEGA--SNDSEDEEGSSNDSEDGLPPLE 240

Query: 241 KNLNHLTLQQDSDEESE 246
           +N+NHL+L Q+SD+ESE
Sbjct: 241 RNMNHLSL-QESDDESE 250

[Close]

BLAST of CmaCh16G006780 vs. TrEMBL
Match: B9SSM1_RICCO (Probable ribosome biogenesis protein RCOM_0985520 OS=Ricinus communis GN=RCOM_0985520 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.2e-91
Identity = 179/266 (67.29%), Postives = 201/266 (75.56%), Query Frame = 1


Query: 1   MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEEL-AVPKIQLAMWD------ 60
           M HNKPRR K+HH  RGQSSR +    EDE LP D   EE+  + P++QLAMWD      
Sbjct: 1   MGHNKPRRSKSHHSNRGQSSRTNLLEREDESLPSDQVPEEDTNSTPRVQLAMWDFGQCDA 60

Query: 61  ----------------LRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLG 120
                           LRVN GFGGIVLSPVG  CVSK+DHSL+K++GLAVVDCSWARL 
Sbjct: 61  KRCTGRKLGRFGLLKELRVNCGFGGIVLSPVGSQCVSKQDHSLIKRKGLAVVDCSWARLN 120

Query: 121 DVPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKW 180
           DVPFVKLRC APRLLPWLVAANPVNYGRPCELSCVEAL+AALIICGE ETADLLL KFKW
Sbjct: 121 DVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETADLLLNKFKW 180

Query: 181 GHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPRIVEGAEKSSVSEDDEGS 240
           GHAFLS+NRELLK YS CENSADIISVQN WLSQQ +VPK    V  +E++  S+D+   
Sbjct: 181 GHAFLSLNRELLKAYSECENSADIISVQNGWLSQQSKVPK---AVPDSEEAETSKDEGSC 240

Query: 241 DDSEDGLPPLEKNLNHLTLQQDSDEE 244
            DSEDGLPPLE+N+NHL   +DSDE+
Sbjct: 241 SDSEDGLPPLERNMNHLNF-EDSDED 262

[Close]

BLAST of CmaCh16G006780 vs. TAIR10
Match: AT5G10070.2 (AT5G10070.2 RNase L inhibitor protein-related)

HSP 1 Score: 325.1 bits (832), Expect = 3.7e-89
Identity = 162/264 (61.36%), Postives = 199/264 (75.38%), Query Frame = 1


Query: 10  KNHHPRRGQSSRGH--KFIGEDECLPIDPDNEEELAVPKIQLAMWD-------------- 69
           K++  + G SSRG       EDE LP+D + E+E  VPK+QLAMWD              
Sbjct: 5   KHNRSKGGNSSRGRTDNLAREDESLPLDQEPEDEAPVPKVQLAMWDFGQCDAKRCTGRKL 64

Query: 70  --------LRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLR 129
                   LRVN+GFGG+VLSPVG  CVS+ED+ L+K++GLAVVDCSWARL DVPF KLR
Sbjct: 65  ARFNLLKELRVNTGFGGVVLSPVGRQCVSREDYDLIKRKGLAVVDCSWARLTDVPFAKLR 124

Query: 130 CGAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVN 189
           C APRLLPWLVAANPVNYGRPCELSCVEAL+AALI+CGE ETA+LLLGKFKWGHAFLS+N
Sbjct: 125 CTAPRLLPWLVAANPVNYGRPCELSCVEALSAALILCGEKETAELLLGKFKWGHAFLSLN 184

Query: 190 RELLKQYSACENSADIISVQNAWLSQQRQVPKEPRIVEGAEKSSVSED----DEGSDDSE 246
           +++LK+YS CENSA+IISVQN+WL+QQ Q+PK+P  +E  E+  V +D    DE  +D E
Sbjct: 185 KDILKEYSKCENSAEIISVQNSWLTQQTQIPKQPPALE--ERKDVKKDGESGDESEEDDE 244

[Close]

BLAST of CmaCh16G006780 vs. NCBI nr
Match: gi|778690469|ref|XP_011653126.1| (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 456.1 bits (1172), Expect = 4.0e-125
Identity = 229/267 (85.77%), Postives = 234/267 (87.64%), Query Frame = 1


Query: 1   MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMW-------- 60
           MSHNK RRFKNHHPRRGQS+RGHKFIGEDECLP+DP NEEE   P I LAMW        
Sbjct: 1   MSHNKTRRFKNHHPRRGQSTRGHKFIGEDECLPVDPANEEEPTRPNIHLAMWDFGQCDAK 60

Query: 61  --------------DLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGD 120
                         DLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGD
Sbjct: 61  RCTGRKLARFGLLKDLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGD 120

Query: 121 VPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWG 180
           VPFVKLRC APRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWG
Sbjct: 121 VPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWG 180

Query: 181 HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPRIVEGAEKSSVSEDDEGSD 240
           HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEP  VEGA+KSSVSE DEGSD
Sbjct: 181 HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPHNVEGADKSSVSEHDEGSD 240

Query: 241 DSEDGLPPLEKNLNHLTLQQDSDEESE 246
           DSEDGLPPLEKNLNHLTLQQ+SDEESE
Sbjct: 241 DSEDGLPPLEKNLNHLTLQQESDEESE 267

[Close]

BLAST of CmaCh16G006780 vs. NCBI nr
Match: gi|659107628|ref|XP_008453772.1| (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 451.8 bits (1161), Expect = 7.5e-124
Identity = 228/267 (85.39%), Postives = 233/267 (87.27%), Query Frame = 1


Query: 1   MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMW-------- 60
           MSHNKPRRFKNHHPRRGQS+RGHKFIGEDE LP+DP NEEE   P IQLAMW        
Sbjct: 1   MSHNKPRRFKNHHPRRGQSTRGHKFIGEDEFLPVDPANEEEPTRPNIQLAMWDFGQCDAK 60

Query: 61  --------------DLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGD 120
                         DLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGD
Sbjct: 61  RCTGRKLARFGLLKDLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGD 120

Query: 121 VPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWG 180
           VPFVKLRC APRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLL KFKWG
Sbjct: 121 VPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLSKFKWG 180

Query: 181 HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPRIVEGAEKSSVSEDDEGSD 240
           HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEP  VEGA+KSSVSE DE SD
Sbjct: 181 HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPHNVEGADKSSVSEHDEDSD 240

Query: 241 DSEDGLPPLEKNLNHLTLQQDSDEESE 246
           DSEDGLPPLEKNLNHLTLQQ+SDEESE
Sbjct: 241 DSEDGLPPLEKNLNHLTLQQESDEESE 267

[Close]

BLAST of CmaCh16G006780 vs. NCBI nr
Match: gi|778690471|ref|XP_011653127.1| (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 447.2 bits (1149), Expect = 1.8e-122
Identity = 227/267 (85.02%), Postives = 232/267 (86.89%), Query Frame = 1


Query: 1   MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMW-------- 60
           MSHNK RRFKNHHPRRGQS+RGHKFIGEDECLP+DP NEEE   P I LAMW        
Sbjct: 1   MSHNKTRRFKNHHPRRGQSTRGHKFIGEDECLPVDPANEEEPTRPNIHLAMWDFGQCDAK 60

Query: 61  --------------DLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGD 120
                         DLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGD
Sbjct: 61  RCTGRKLARFGLLKDLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGD 120

Query: 121 VPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWG 180
           VPFVKLRC APRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWG
Sbjct: 121 VPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWG 180

Query: 181 HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPRIVEGAEKSSVSEDDEGSD 240
           HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEP  VE  +KSSVSE DEGSD
Sbjct: 181 HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPHNVE--DKSSVSEHDEGSD 240

Query: 241 DSEDGLPPLEKNLNHLTLQQDSDEESE 246
           DSEDGLPPLEKNLNHLTLQQ+SDEESE
Sbjct: 241 DSEDGLPPLEKNLNHLTLQQESDEESE 265

[Close]

BLAST of CmaCh16G006780 vs. NCBI nr
Match: gi|659107630|ref|XP_008453773.1| (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 443.0 bits (1138), Expect = 3.5e-121
Identity = 226/267 (84.64%), Postives = 231/267 (86.52%), Query Frame = 1


Query: 1   MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMW-------- 60
           MSHNKPRRFKNHHPRRGQS+RGHKFIGEDE LP+DP NEEE   P IQLAMW        
Sbjct: 1   MSHNKPRRFKNHHPRRGQSTRGHKFIGEDEFLPVDPANEEEPTRPNIQLAMWDFGQCDAK 60

Query: 61  --------------DLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGD 120
                         DLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGD
Sbjct: 61  RCTGRKLARFGLLKDLRVNSGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGD 120

Query: 121 VPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWG 180
           VPFVKLRC APRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLL KFKWG
Sbjct: 121 VPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLSKFKWG 180

Query: 181 HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPRIVEGAEKSSVSEDDEGSD 240
           HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEP  VE  +KSSVSE DE SD
Sbjct: 181 HAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPHNVE--DKSSVSEHDEDSD 240

Query: 241 DSEDGLPPLEKNLNHLTLQQDSDEESE 246
           DSEDGLPPLEKNLNHLTLQQ+SDEESE
Sbjct: 241 DSEDGLPPLEKNLNHLTLQQESDEESE 265

[Close]

BLAST of CmaCh16G006780 vs. NCBI nr
Match: gi|728833815|gb|KHG13258.1| (putative ribosome biogenesis C16orf42 [Gossypium arboreum])

HSP 1 Score: 385.2 bits (988), Expect = 8.6e-104
Identity = 195/247 (78.95%), Postives = 217/247 (87.85%), Query Frame = 1


Query: 1   MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDLRVNSGF 60
           M HNKPRRFK H+  RGQSSR H+F  EDE LP D   EEE  +PK+QLAMWDLRVNSGF
Sbjct: 1   MGHNKPRRFKTHNSHRGQSSRNHQFQREDESLPHDQPPEEEPNIPKVQLAMWDLRVNSGF 60

Query: 61  GGIVLSPVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRLLPWLVAANP 120
           GGIVLSPVG  CVSKED++L+K++GLAVVDCSWARL DVPFVKLRCGAPRLLPWLVAANP
Sbjct: 61  GGIVLSPVGSQCVSKEDYNLIKRKGLAVVDCSWARLSDVPFVKLRCGAPRLLPWLVAANP 120

Query: 121 VNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSAD 180
           VNYGRPCELSCVEAL+AAL+ICGE ETA+LLLGKFKWGHAFLS+NRELLK YS CENSAD
Sbjct: 121 VNYGRPCELSCVEALSAALLICGEEETANLLLGKFKWGHAFLSLNRELLKAYSECENSAD 180

Query: 181 IISVQNAWLSQQRQVPK-EPRIVEGAEKSSVSEDDEG-SDDSEDGLPPLEKNLNHLTLQQ 240
           IISVQN+WLSQQRQVPK  P   EGA  S+ SED+EG S+DSEDGLPPLE+N+NHL+L Q
Sbjct: 181 IISVQNSWLSQQRQVPKVPPDAAEGA--SNDSEDEEGSSNDSEDGLPPLERNMNHLSL-Q 240

Query: 241 DSDEESE 246
           +SD+ESE
Sbjct: 241 ESDDESE 244

The following BLAST results are available for this feature:

BLAST of CmaCh16G006780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TSR3_MOUSE	5.5e-42	55.17	Ribosome biogenesis protein TSR3 homolog OS=Mus musculus GN=Tsr3 PE=1 SV=1	[more]
TSR3_HUMAN	1.8e-37	45.26	Ribosome biogenesis protein TSR3 homolog OS=Homo sapiens GN=TSR3 PE=1 SV=1	[more]
TSR3_YEAST	3.2e-34	38.63	Ribosome biogenesis protein TSR3 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]
TSR3_SCHPO	7.4e-31	43.92	Ribosome biogenesis protein tsr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
TSR3_METKA	2.9e-27	47.29	Probable ribosome biogenesis protein MK0638 OS=Methanopyrus kandleri (strain AV1...	[more]

BLAST of CmaCh16G006780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0NFC9_GOSAR	6.0e-104	78.95	Probable ribosome biogenesis protein F383_09025 OS=Gossypium arboreum GN=F383_09...	[more]
A0A0A0KXU5_CUCSA	1.9e-102	94.44	Probable ribosome biogenesis protein Csa_4G031030 OS=Cucumis sativus GN=Csa_4G03...	[more]
A0A061DIB2_THECC	2.7e-96	70.41	Probable ribosome biogenesis protein TCM_001191 OS=Theobroma cacao GN=TCM_001191...	[more]
A0A0D2QN91_GOSRA	1.3e-93	72.37	Probable ribosome biogenesis protein B456_003G045400 OS=Gossypium raimondii GN=B...	[more]
B9SSM1_RICCO	1.2e-91	67.29	Probable ribosome biogenesis protein RCOM_0985520 OS=Ricinus communis GN=RCOM_09...	[more]

BLAST of CmaCh16G006780 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10070.2	3.7e-89	61.36	RNase L inhibitor protein-related	[more]

BLAST of CmaCh16G006780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778690469\|ref\|XP_011653126.1\|	4.0e-125	85.77	PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus]	[more]
gi\|659107628\|ref\|XP_008453772.1\|	7.5e-124	85.39	PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis melo]	[more]
gi\|778690471\|ref\|XP_011653127.1\|	1.8e-122	85.02	PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis sativus]	[more]
gi\|659107630\|ref\|XP_008453773.1\|	3.5e-121	84.64	PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis melo]	[more]
gi\|728833815\|gb\|KHG13258.1\|	8.6e-104	78.95	putative ribosome biogenesis C16orf42 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007177	TDD_dom
IPR022968	Rbsm_biogenesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006780.1	CmaCh16G006780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007177	Ribosome biogenesis protein, C-terminal	PRODOM	PD016638		coord: 61..189 score: 1.0
IPR007177	Ribosome biogenesis protein, C-terminal	PFAM	PF04034	DUF367	coord: 63..189 score: 7.0
IPR022968	Ribosome biogenesis protein	HAMAP	MF_01116	TSR3	coord: 2..190 score: 31
IPR022968	Ribosome biogenesis protein	PANTHER	PTHR20426	FAMILY NOT NAMED	coord: 32..245 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G006780	Cucsa.029440	Cucumber (Gy14) v1	cgycmaB0000
CmaCh16G006780	Csa4G031030	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G006780	MELO3C017578	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G006780	CSPI04G04760	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G006780	CmoCh16G007360	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G006780	Cp4.1LG14g01380	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G006780	MELO3C017578.2	Melon (DHL92) v3.6.1	cmamedB350
CmaCh16G006780	CsaV3_UNG186480	Cucumber (Chinese Long) v3	cmacucB0409
CmaCh16G006780	Bhi01G001921	Wax gourd	cmawgoB0432
CmaCh16G006780	CsGy4G004690	Cucumber (Gy14) v2	cgybcmaB498

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G006780	Cucurbita maxima (Rimu)	cmacmaB350
CmaCh16G006780	Cucurbita moschata (Rifu)	cmacmoB337
CmaCh16G006780	Watermelon (Charleston Gray)	cmawcgB301
CmaCh16G006780	Watermelon (97103) v1	cmawmB307
CmaCh16G006780	Watermelon (97103) v1	cmawmB323
CmaCh16G006780	Cucurbita pepo (Zucchini)	cmacpeB350
CmaCh16G006780	Bottle gourd (USVL1VR-Ls)	cmalsiB326
CmaCh16G006780	Silver-seed gourd	carcmaB1286
CmaCh16G006780	Silver-seed gourd	carcmaB1409
CmaCh16G006780	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G006780	Watermelon (97103) v2	cmawmbB351
CmaCh16G006780	Watermelon (97103) v2	cmawmbB331