CmaCh16G006470 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G006470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cma_Chr16 : 3363604 .. 3365115 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATCCCAATCAACACAATGTCTTCTCCGTCGATCAGTCAGGTGATTAGTGTTAAGCTTACACAAGAAAATTATCTACTGTGGTCTACCCAAATCCTTCCCTACTTGCGTAGCCAAAACCTTGTTGGTTTTGTGGATGGATCCATGCCTGCACCAAGCCAGACGATCGCCGTTGAACCAAGTGAAGAAATAGGGAATCGCAAAATTATCATCAACCCTGAGTTCACAGTCTGGTACCCCCAGGACCAGCTGGTACTCAGCCTCATCAACTCATCAGTCACTGAGGAGGTTCTCAGCACGATGGTTGGAATCACCACTGCACGAGAAGCCTGGATTACGCTGGAGCGACAATTTGCTTCCACATCTCGAGCAAGAGCAATGCAGATCCGTATGGAACTCTCTACTATCCAGAAAAAGGACATGACAATTGCTGACTACTTTCGTAAAGTAAAACATCTTGGTGATACACTTGCTGCCATTGGCAAGCGAATAGAGGATGAAGAACTCATCGCCTACATGCTGCAAGGACTTGGTCCAGATTATGATCCTCTAGTCACAAGCATTACAACCAGAACAGATGTATACACTGTCAGCGACGTGTATGCTCACATGCTGAGCTATGAGATGCGGCACTTGCGTAAGGGTACATTTGAGCAACTTTCATCTGCTAACAATGTCAATAGGATATCCATTCGTGGAGGTGCCAATGGAGGTCGAGGTAGTCGCGGTCGTAGTCGTCAGTTAAATAGTGGTCATGGACAATCAAGGCGTACTGTGAACAATCCTGGACGTCAACCATCAAAGACACAAAGCAGCTCAGGCATTGTCTGTCAGATTTGTGGTAAGCCCAATCACGATGCTTTGCAATGCTGGCACAGATTTGATCAGGCATATCAAGTCGAAAATAATCTCAAACAAGCAGCTTTGGCAACAAGTGGATACACTAGTGACACAAACTGGTATGTTGACACTGGAGCCACAGATCATATCACCAATGACCTAGAGAGGCTTACCACCAGAGAACGCTACACTGGCACCGACCAAATTCAGGTTGCAAATGGCGCAGGTTTGTCTATCTCTCATATTGGGAATTCATTAATTTCTGGTTCATCTCTTGTTCTGAAACATATCCTATATGCTCCTAAAATCAATAAGCACCTAATTTCAGTACAAAGACTAGCATCTGATAATAATGCTGTTGTAGAATTTCACCCAAACTATTTTTTGGTTAAGGACCGAGTCACAAAAAAACTCCTGCTCCACGGTAGATGTAAGAATGGCCTATACGTTCTACCGCATAATTTCAGTCAAGCCTTGCTGACAGCCAAACTTTCGAAAGAACAATGGCACAGAAGGCTAGGGCACCCTGCATCTCCAATTACCATTAGAATTCTACAAGATAATAATTTAGCTATAGATACTAATATTCCCTCTTCCTCAATTTGTAATGCTTGTCAATTAGGGAAAGCACATCAATTGCCATTTGGTTCTTCTCAGCATGTANTATAA

mRNA sequence

ATGTCAATCCCAATCAACACAATGTCTTCTCCGTCGATCAGTCAGGTGATTAGTGTTAAGCTTACACAAGAAAATTATCTACTGTGGTCTACCCAAATCCTTCCCTACTTGCGTAGCCAAAACCTTGTTGGTTTTGTGGATGGATCCATGCCTGCACCAAGCCAGACGATCGCCGTTGAACCAAGTGAAGAAATAGGGAATCGCAAAATTATCATCAACCCTGAGTTCACAGTCTGGTACCCCCAGGACCAGCTGGTACTCAGCCTCATCAACTCATCAGTCACTGAGGAGGTTCTCAGCACGATGGTTGGAATCACCACTGCACGAGAAGCCTGGATTACGCTGGAGCGACAATTTGCTTCCACATCTCGAGCAAGAGCAATGCAGATCCGTATGGAACTCTCTACTATCCAGAAAAAGGACATGACAATTGCTGACTACTTTCGTAAAGTAAAACATCTTGGTGATACACTTGCTGCCATTGGCAAGCGAATAGAGGATGAAGAACTCATCGCCTACATGCTGCAAGGACTTGGTCCAGATTATGATCCTCTAGTCACAAGCATTACAACCAGAACAGATGTATACACTGTCAGCGACGTGTATGCTCACATGCTGAGCTATGAGATGCGGCACTTGCGTAAGGGTACATTTGAGCAACTTTCATCTGCTAACAATGTCAATAGGATATCCATTCGTGGAGGTGCCAATGGAGGTCGAGGTAGTCGCGGTCGTAGTCGTCAGTTAAATAGTGGTCATGGACAATCAAGGCGTACTGTGAACAATCCTGGACGTCAACCATCAAAGACACAAAGCAGCTCAGGCATTGTCTGTCAGATTTGTGGTAAGCCCAATCACGATGCTTTGCAATGCTGGCACAGATTTGATCAGGCATATCAAGTCGAAAATAATCTCAAACAAGCAGCTTTGGCAACAAGTGGATACACTAGTGACACAAACTGGTATGTTGACACTGGAGCCACAGATCATATCACCAATGACCTAGAGAGGCTTACCACCAGAGAACGCTACACTGGCACCGACCAAATTCAGGTTGCAAATGGCGCAGGTTTGTCTATCTCTCATATTGGGAATTCATTAATTTCTGGTTCATCTCTTGTTCTGAAACATATCCTATATGCTCCTAAAATCAATAAGCACCTAATTTCAGTACAAAGACTAGCATCTGATAATAATGCTGTTGTAGAATTTCACCCAAACTATTTTTTGGTTAAGGACCGAGTCACAAAAAAACTCCTGCTCCACGGTAGATGTAAGAATGGCCTATACGTTCTACCGCATAATTTCAGTCAAGCCTTGCTGACAGCCAAACTTTCGAAAGAACAATGGCACAGAAGGCTAGGGCACCCTGCATCTCCAATTACCATTAGAATTCTACAAGATAATAATTTAGCTATAGATACTAATATTCCCTCTTCCTCAATTTGTAATGCTTGTCAATTAGGGAAAGCACATCAATTGCCATTTGGTTCTTCTCAGCATGTANTATAA

Coding sequence (CDS)

ATGTCAATCCCAATCAACACAATGTCTTCTCCGTCGATCAGTCAGGTGATTAGTGTTAAGCTTACACAAGAAAATTATCTACTGTGGTCTACCCAAATCCTTCCCTACTTGCGTAGCCAAAACCTTGTTGGTTTTGTGGATGGATCCATGCCTGCACCAAGCCAGACGATCGCCGTTGAACCAAGTGAAGAAATAGGGAATCGCAAAATTATCATCAACCCTGAGTTCACAGTCTGGTACCCCCAGGACCAGCTGGTACTCAGCCTCATCAACTCATCAGTCACTGAGGAGGTTCTCAGCACGATGGTTGGAATCACCACTGCACGAGAAGCCTGGATTACGCTGGAGCGACAATTTGCTTCCACATCTCGAGCAAGAGCAATGCAGATCCGTATGGAACTCTCTACTATCCAGAAAAAGGACATGACAATTGCTGACTACTTTCGTAAAGTAAAACATCTTGGTGATACACTTGCTGCCATTGGCAAGCGAATAGAGGATGAAGAACTCATCGCCTACATGCTGCAAGGACTTGGTCCAGATTATGATCCTCTAGTCACAAGCATTACAACCAGAACAGATGTATACACTGTCAGCGACGTGTATGCTCACATGCTGAGCTATGAGATGCGGCACTTGCGTAAGGGTACATTTGAGCAACTTTCATCTGCTAACAATGTCAATAGGATATCCATTCGTGGAGGTGCCAATGGAGGTCGAGGTAGTCGCGGTCGTAGTCGTCAGTTAAATAGTGGTCATGGACAATCAAGGCGTACTGTGAACAATCCTGGACGTCAACCATCAAAGACACAAAGCAGCTCAGGCATTGTCTGTCAGATTTGTGGTAAGCCCAATCACGATGCTTTGCAATGCTGGCACAGATTTGATCAGGCATATCAAGTCGAAAATAATCTCAAACAAGCAGCTTTGGCAACAAGTGGATACACTAGTGACACAAACTGGTATGTTGACACTGGAGCCACAGATCATATCACCAATGACCTAGAGAGGCTTACCACCAGAGAACGCTACACTGGCACCGACCAAATTCAGGTTGCAAATGGCGCAGGTTTGTCTATCTCTCATATTGGGAATTCATTAATTTCTGGTTCATCTCTTGTTCTGAAACATATCCTATATGCTCCTAAAATCAATAAGCACCTAATTTCAGTACAAAGACTAGCATCTGATAATAATGCTGTTGTAGAATTTCACCCAAACTATTTTTTGGTTAAGGACCGAGTCACAAAAAAACTCCTGCTCCACGGTAGATGTAAGAATGGCCTATACGTTCTACCGCATAATTTCAGTCAAGCCTTGCTGACAGCCAAACTTTCGAAAGAACAATGGCACAGAAGGCTAGGGCACCCTGCATCTCCAATTACCATTAGAATTCTACAAGATAATAATTTAGCTATAGATACTAATATTCCCTCTTCCTCAATTTGTAATGCTTGTCAATTAGGGAAAGCACATCAATTGCCATTTGGTTCTTCTCAGCATGTANTATAA

Protein sequence

MSIPINTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEEIGNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQVENNLKQAALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGNSLISGSSLVLKHILYAPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLLHGRCKNGLYVLPHNFSQALLTAKLSKEQWHRRLGHPASPITIRILQDNNLAIDTNIPSSSICNACQLGKAHQLPFGSSQHVX

Homology

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BLAST of CmaCh16G006470 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 73.9 bits (180), Expect = 5.5e-12
Identity = 117/516 (22.67%), Postives = 205/516 (39.73%), Query Frame = 1


Query: 24  ENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEEIGNRKIIINPEFTVWYPQD 83
           E Y +W  +I   L  Q+++  VDG MP                     N     W   +
Sbjct: 14  EKYAIWKFRIRALLAEQDVLKVVDGLMP---------------------NEVDDSWKKAE 73

Query: 84  QLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARAMQIRMELSTIQ-KKDM 143
           +   S I   +++  L+      TAR+    L+  +   S A  + +R  L +++   +M
Sbjct: 74  RCAKSTIIEYLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEM 133

Query: 144 TIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDV-YTVSDV 203
           ++  +F     L   L A G +IE+ + I+++L  L   YD ++T+I T ++   T++ V
Sbjct: 134 SLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFV 193

Query: 204 YAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSRQLNSGHGQSRRTVN 263
              +L  E+    K   +   ++  V    +    N  + +  ++R            V 
Sbjct: 194 KNRLLDQEI----KIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNR------------VT 253

Query: 264 NPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQVEN--NLKQAALATS------ 323
            P ++  K  S   + C  CG+  H    C+H + +    +N  N KQ   ATS      
Sbjct: 254 KP-KKIFKGNSKYKVKCHHCGREGHIKKDCFH-YKRILNNKNKENEKQVQTATSHGIAFM 313

Query: 324 -------GYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGN- 383
                      +  + +D+GA+DH+ ND E L        TD ++V     ++++  G  
Sbjct: 314 VKEVNNTSVMDNCGFVLDSGASDHLIND-ESLY-------TDSVEVVPPLKIAVAKQGEF 373

Query: 384 ---------SLISGSSLVLKHILYAPKINKHLISVQRLASDNNAVVEFHPNYFLVKDRVT 443
                     L +   + L+ +L+  +   +L+SV+RL  +    +EF       K  VT
Sbjct: 374 IYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRL-QEAGMSIEFD------KSGVT 433

Query: 444 KKLLLHGRCKNGLYVLPH----------NFSQALLTAKLSK--EQWHRRLGHPASPITIR 497
                    KNGL V+ +          NF    + AK       WH R GH +    + 
Sbjct: 434 IS-------KNGLMVVKNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLE 468

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BLAST of CmaCh16G006470 vs. TrEMBL
Match: A0A0A9GRB5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 1.3e-134
Identity = 264/463 (57.02%), Postives = 333/463 (71.92%), Query Frame = 1


Query: 32  QILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEEIGNRKIIINPEFTVWYPQDQLVLSLIN 91
           Q+LPYL  Q L+ +VDGS+P P QTI V P E+ G R II+N EFT WY QD LVLS I 
Sbjct: 2   QLLPYLTGQGLLRYVDGSIPRPIQTIIVTP-EDSGRRSIIVNLEFTTWYHQDHLVLSTIL 61

Query: 92  SSVTEEVLSTMVGITTAREAWITLERQFASTSRARAMQIRMELSTIQKKDMTIADYFRKV 151
           SS+TEEVL ++VG+ T+R+ W  LE+ F STSRA  MQI M+L+TIQKKDM+IADYF KV
Sbjct: 62  SSLTEEVLGSVVGLLTSRDVWCHLEKMFTSTSRAWIMQICMQLTTIQKKDMSIADYFNKV 121

Query: 152 KHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDVYTVSDVYAHMLSYEMR 211
           K L D L+ +GK +EDE+L AYM+ GL P+YD LVTSITTR + YT++DVYA+MLSYE R
Sbjct: 122 KRLADILSVVGKPLEDEKLTAYMMCGLSPEYDALVTSITTRVNQYTIADVYAYMLSYENR 181

Query: 212 HLRKGTFEQLSSANNVNRISIR-GGANGGRGSRGRSR---QLNSGHGQSRRTVNNPGRQP 271
                T  Q+S AN  +R S R G  N  R + G  R   Q + G G  RR   +P   P
Sbjct: 182 QEHNNTIVQISFANTASRNSERDGNNNNSRHNHGLGRGGCQQSGGRGGGRRQGEHP--TP 241

Query: 272 SKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQVENNLKQAALATSGYTSDTNWYVDTGA 331
           SK      +VCQ+C K  HDAL+CW+RFD  YQ ++N K AA  ++GY  D NWY+DT A
Sbjct: 242 SK------VVCQVCRKEGHDALRCWYRFDHNYQADDN-KVAATVSNGYIVDPNWYMDTSA 301

Query: 332 TDHITNDLERLTTRERYTGTDQIQVANGAGLSISHIGNSLISG--SSLVLKHILYAPKIN 391
           TDHITNDL+RLTT+E YTG DQ+QVANGA LSI H GNS I+     L L H+L+APKIN
Sbjct: 302 TDHITNDLDRLTTKEAYTGGDQVQVANGACLSILHTGNSYIASLHRPLYLNHVLHAPKIN 361

Query: 392 KHLISVQRLASDNNAVVEFHPNYFLVKDRVTKKLLLHGRCKNGLYVLPHNF-SQALLTAK 451
           +HLISV++LA+ NNA VEF+PN F VKD+ TK  LL  RCKNGLY+LP+ +  QALL AK
Sbjct: 362 RHLISVRKLATYNNAYVEFYPNSFFVKDQATKVTLLSRRCKNGLYMLPNKWPCQALLFAK 421

Query: 452 LSKEQWHRRLGHPASPITIRILQDNNLAIDTNIPSSSICNACQ 488
           +++E WH+RLGHPAS +T+R+L +N++ +  +  S+SIC+ACQ
Sbjct: 422 ITQECWHQRLGHPASLVTLRVLHNNHIVVAPDKSSTSICDACQ 454

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BLAST of CmaCh16G006470 vs. TrEMBL
Match: V7BW74_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G139500g PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 5.0e-129
Identity = 247/317 (77.92%), Postives = 262/317 (82.65%), Query Frame = 1


Query: 8   MSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEEIGN 67
           MSSPSISQVI+VKLTQENYLLWS QILPYLRSQ LVGF+DGSMP P+QTI VE SEEIG+
Sbjct: 1   MSSPSISQVINVKLTQENYLLWSAQILPYLRSQGLVGFMDGSMPPPNQTIVVESSEEIGS 60

Query: 68  RKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARA 127
           RKII+NPEFTVWYPQDQLVLSLINSSVTEEVLST+VGITTAREAW TLERQFASTSRARA
Sbjct: 61  RKIIVNPEFTVWYPQDQLVLSLINSSVTEEVLSTVVGITTAREAWATLERQFASTSRARA 120

Query: 128 MQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVT 187
           MQI                    +K LGDTLAAIGKR+EDEELIAYMLQGLGPDYDPLVT
Sbjct: 121 MQI--------------------LKRLGDTLAAIGKRVEDEELIAYMLQGLGPDYDPLVT 180

Query: 188 SITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSR 247
            ITTR DVYTVSDVYAHMLSYEM HLR GT EQ SSANNVNR+  RGG NG RG  GR R
Sbjct: 181 RITTRIDVYTVSDVYAHMLSYEMHHLRNGTLEQFSSANNVNRMPNRGGINGRRG--GRGR 240

Query: 248 QLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQVENNLKQ 307
           Q N G GQ+  T NN GRQPSK QS+S  VCQICGKPNH ALQCWHRFDQAYQ E+NLKQ
Sbjct: 241 QSNGGRGQTWHTRNNFGRQPSKAQSNSDNVCQICGKPNHGALQCWHRFDQAYQAEDNLKQ 295

Query: 308 AALATSGYTSDTNWYVD 325
           A +ATSGYT D NWY++
Sbjct: 301 AIVATSGYTGDANWYIE 295

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BLAST of CmaCh16G006470 vs. TrEMBL
Match: V7B6D9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G110300g PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 1.5e-125
Identity = 246/316 (77.85%), Postives = 258/316 (81.65%), Query Frame = 1


Query: 8   MSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEEIGN 67
           MSSPSISQVI+VKLTQENYLLWS QILPYLRSQ LVGFVDGSM  P+Q + +        
Sbjct: 1   MSSPSISQVINVKLTQENYLLWSAQILPYLRSQGLVGFVDGSMLPPNQRLRLS------- 60

Query: 68  RKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARA 127
                         QDQLVLSLINSSVTEEVLST+VGITTAREAW TLERQFASTSRARA
Sbjct: 61  --------------QDQLVLSLINSSVTEEVLSTVVGITTAREAWDTLERQFASTSRARA 120

Query: 128 MQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVT 187
           MQIRMELSTIQKKDMTIADYFRKVK L DTLAAIGKR+EDEELIAYMLQGLGPDYDP VT
Sbjct: 121 MQIRMELSTIQKKDMTIADYFRKVKRLRDTLAAIGKRVEDEELIAYMLQGLGPDYDPFVT 180

Query: 188 SITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSR 247
           SITTRTDVYTVSDVYAHMLSYEMRHLR GT EQ SSANNVNR+S RGG NG RG RGR R
Sbjct: 181 SITTRTDVYTVSDVYAHMLSYEMRHLRNGTLEQFSSANNVNRMSNRGGTNGRRGGRGRGR 240

Query: 248 QLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQVENNLKQ 307
           Q N G GQ+  T NN GRQPSK QS+S  V QICGKPNHDALQCWH FDQ YQ E+NLKQ
Sbjct: 241 QSNGGRGQTWHTRNNFGRQPSKAQSNSDKVYQICGKPNHDALQCWHIFDQEYQAEDNLKQ 295

Query: 308 AALATSGYTSDTNWYV 324
           A +A SGYT D NW+V
Sbjct: 301 AVVAISGYTGDANWFV 295

[Close]

BLAST of CmaCh16G006470 vs. TrEMBL
Match: V7CSV3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G323600g PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 1.3e-121
Identity = 239/298 (80.20%), Postives = 249/298 (83.56%), Query Frame = 1


Query: 2   SIPINTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEP 61
           S+ INTMSSPSISQVI+VKLTQENYLLWS QILPYLRSQ LVGFVDGSMP P+QTI VE 
Sbjct: 4   SLQINTMSSPSISQVINVKLTQENYLLWSAQILPYLRSQGLVGFVDGSMPPPNQTITVE- 63

Query: 62  SEEIGNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFAS 121
                          ++WYPQDQLVLSLINSSVTEEVLST+VGITTAREAW  LERQFAS
Sbjct: 64  ---------------SIWYPQDQLVLSLINSSVTEEVLSTVVGITTAREAWDMLERQFAS 123

Query: 122 TSRARAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPD 181
           TSRARAMQ  MELSTIQKKDMTIADYFRKVK LGDTLAAIGKR+EDEELIAYMLQGLG D
Sbjct: 124 TSRARAMQNHMELSTIQKKDMTIADYFRKVKRLGDTLAAIGKRVEDEELIAYMLQGLGLD 183

Query: 182 YDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRG 241
           YDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLR GT EQ   ANNVN +S RGG NG RG
Sbjct: 184 YDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLRNGTLEQFPFANNVNSMSNRGGTNGRRG 243

Query: 242 SRGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAY 300
             GR RQ N G GQ+  T NN GRQPSK QS+S  VCQICGKPNHDALQCWHRFDQAY
Sbjct: 244 --GRGRQSNGGRGQTWHTRNNSGRQPSKAQSNSDKVCQICGKPNHDALQCWHRFDQAY 283

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BLAST of CmaCh16G006470 vs. TrEMBL
Match: C0PCZ1_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 2.9e-121
Identity = 231/357 (64.71%), Postives = 274/357 (76.75%), Query Frame = 1


Query: 6   NTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEEI 65
           ++M +P+ SQ++S+KL  ENYLLW  Q+LPYLRSQ L G +DGS+PAP QT+AV+P+E  
Sbjct: 15  SSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGS 74

Query: 66  GNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRA 125
           G R I INPEFT WY QDQLVLS+INSS++EEVL+T+V  TTAR AW TLER +AS+SRA
Sbjct: 75  GGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRA 134

Query: 126 RAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPL 185
           R MQIRM+L+TIQK D+T A+YFRKVK L DTLAA+GKR+EDEE I+Y+L+GL  DYD L
Sbjct: 135 RIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSL 194

Query: 186 VTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGG---ANGGRGS 245
           VTSITTR D YT+SDVYAH+LS+E R        Q+SS NN NR+  RGG      GRG 
Sbjct: 195 VTSITTRPDTYTISDVYAHLLSFETRQEYHTAVGQISSVNNANRVPSRGGGAFGQNGRGG 254

Query: 246 RGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQVE 305
           RGR  +   G G +R     P R PS   SSSG  CQICGK NH+ALQCWHRFDQAYQ E
Sbjct: 255 RGRGGRSQPGRGNNR----PPARPPSNNSSSSG-TCQICGKGNHNALQCWHRFDQAYQAE 314

Query: 306 NNLKQAALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLS 360
           + +KQAA AT  Y  D NWY+D+GATDHIT+DLERLTTRERYTG D+IQVANGAG S
Sbjct: 315 STVKQAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRERYTGGDKIQVANGAGSS 366

[Close]

BLAST of CmaCh16G006470 vs. TAIR10
Match: AT1G34070.1 (AT1G34070.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 79.7 bits (195), Expect = 5.6e-15
Identity = 66/261 (25.29%), Postives = 108/261 (41.38%), Query Frame = 1


Query: 17  ISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEEIGNRKIIINPEF 76
           + + + + NY  W    L +  S +++G +DG++                   +  N   
Sbjct: 22  VMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL-------------------LPTNAND 81

Query: 77  TVWYPQDQLV-LSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARAMQIRMELS 136
             W  +D +V LSL  +   ++   + V  +T+R+ W+ ++ QF +   ARA+++  EL 
Sbjct: 82  VNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELR 141

Query: 137 TIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDV 196
           T    DM +ADY+RK+K L D+L  +   + D  L+ Y+L GL P +D ++  I  R   
Sbjct: 142 TKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPF 201

Query: 197 YTVSDVYAHMLSYEMR-------------HLRKGTFEQLSSANNVNRISIRGGANGGRGS 256
            +  D    +   E R             H    T    S A  V      GG   G   
Sbjct: 202 PSFDDAATMLQEEEDRLKRAIKPNPTHVDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRG 261

Query: 257 RGRSRQLNSGHGQSRRTVNNP 264
           RGR   +  G G      N P
Sbjct: 262 RGRGNNIFRGRGGRFSYYNMP 263

[Close]

BLAST of CmaCh16G006470 vs. TAIR10
Match: AT5G48050.1 (AT5G48050.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 73.6 bits (179), Expect = 4.0e-13
Identity = 68/263 (25.86%), Postives = 113/263 (42.97%), Query Frame = 1


Query: 17  ISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEEIGNRKIIINPEF 76
           +++ L + NY +W         S  ++G +DGS           P+     R        
Sbjct: 24  VTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSST---------PTPMTEKR-------- 83

Query: 77  TVWYPQDQLVLSLINSSVTEEVLSTMVGI-TTAREAWITLERQFASTSRARAMQIRMELS 136
             W  +D LV   I  ++T+ +L T++ +  TAR+ W++LE  F     ARA+Q   EL 
Sbjct: 84  --WKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELR 143

Query: 137 TIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDV 196
           T    D+++ +Y +K+K L D L  +   I D  L+ ++L GL   YD ++  I  ++  
Sbjct: 144 TTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPF 203

Query: 197 YTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRG----------------GANGG 256
            + ++  + +L  E R   K      SS ++ N  S+                    N  
Sbjct: 204 PSFTEARSMLLMEESRLSNKSK----SSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNS 263

Query: 257 RGSRGRSRQLNSGHGQSRRTVNN 263
              RGRS++ N G G S    NN
Sbjct: 264 NMGRGRSKKKNRGGGSSDGRYNN 263

[Close]

BLAST of CmaCh16G006470 vs. NCBI nr
Match: gi|593699628|ref|XP_007150263.1| (hypothetical protein PHAVU_005G139500g [Phaseolus vulgaris])

HSP 1 Score: 469.5 bits (1207), Expect = 7.1e-129
Identity = 247/317 (77.92%), Postives = 262/317 (82.65%), Query Frame = 1


Query: 8   MSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEEIGN 67
           MSSPSISQVI+VKLTQENYLLWS QILPYLRSQ LVGF+DGSMP P+QTI VE SEEIG+
Sbjct: 1   MSSPSISQVINVKLTQENYLLWSAQILPYLRSQGLVGFMDGSMPPPNQTIVVESSEEIGS 60

Query: 68  RKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARA 127
           RKII+NPEFTVWYPQDQLVLSLINSSVTEEVLST+VGITTAREAW TLERQFASTSRARA
Sbjct: 61  RKIIVNPEFTVWYPQDQLVLSLINSSVTEEVLSTVVGITTAREAWATLERQFASTSRARA 120

Query: 128 MQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVT 187
           MQI                    +K LGDTLAAIGKR+EDEELIAYMLQGLGPDYDPLVT
Sbjct: 121 MQI--------------------LKRLGDTLAAIGKRVEDEELIAYMLQGLGPDYDPLVT 180

Query: 188 SITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSR 247
            ITTR DVYTVSDVYAHMLSYEM HLR GT EQ SSANNVNR+  RGG NG RG  GR R
Sbjct: 181 RITTRIDVYTVSDVYAHMLSYEMHHLRNGTLEQFSSANNVNRMPNRGGINGRRG--GRGR 240

Query: 248 QLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQVENNLKQ 307
           Q N G GQ+  T NN GRQPSK QS+S  VCQICGKPNH ALQCWHRFDQAYQ E+NLKQ
Sbjct: 241 QSNGGRGQTWHTRNNFGRQPSKAQSNSDNVCQICGKPNHGALQCWHRFDQAYQAEDNLKQ 295

Query: 308 AALATSGYTSDTNWYVD 325
           A +ATSGYT D NWY++
Sbjct: 301 AIVATSGYTGDANWYIE 295

[Close]

BLAST of CmaCh16G006470 vs. NCBI nr
Match: gi|593408126|ref|XP_007140419.1| (hypothetical protein PHAVU_008G110300g [Phaseolus vulgaris])

HSP 1 Score: 458.0 bits (1177), Expect = 2.1e-125
Identity = 246/316 (77.85%), Postives = 258/316 (81.65%), Query Frame = 1


Query: 8   MSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEEIGN 67
           MSSPSISQVI+VKLTQENYLLWS QILPYLRSQ LVGFVDGSM  P+Q + +        
Sbjct: 1   MSSPSISQVINVKLTQENYLLWSAQILPYLRSQGLVGFVDGSMLPPNQRLRLS------- 60

Query: 68  RKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARA 127
                         QDQLVLSLINSSVTEEVLST+VGITTAREAW TLERQFASTSRARA
Sbjct: 61  --------------QDQLVLSLINSSVTEEVLSTVVGITTAREAWDTLERQFASTSRARA 120

Query: 128 MQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVT 187
           MQIRMELSTIQKKDMTIADYFRKVK L DTLAAIGKR+EDEELIAYMLQGLGPDYDP VT
Sbjct: 121 MQIRMELSTIQKKDMTIADYFRKVKRLRDTLAAIGKRVEDEELIAYMLQGLGPDYDPFVT 180

Query: 188 SITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSR 247
           SITTRTDVYTVSDVYAHMLSYEMRHLR GT EQ SSANNVNR+S RGG NG RG RGR R
Sbjct: 181 SITTRTDVYTVSDVYAHMLSYEMRHLRNGTLEQFSSANNVNRMSNRGGTNGRRGGRGRGR 240

Query: 248 QLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQVENNLKQ 307
           Q N G GQ+  T NN GRQPSK QS+S  V QICGKPNHDALQCWH FDQ YQ E+NLKQ
Sbjct: 241 QSNGGRGQTWHTRNNFGRQPSKAQSNSDKVYQICGKPNHDALQCWHIFDQEYQAEDNLKQ 295

Query: 308 AALATSGYTSDTNWYV 324
           A +A SGYT D NW+V
Sbjct: 301 AVVAISGYTGDANWFV 295

[Close]

BLAST of CmaCh16G006470 vs. NCBI nr
Match: gi|593794831|ref|XP_007160454.1| (hypothetical protein PHAVU_002G323600g [Phaseolus vulgaris])

HSP 1 Score: 444.9 bits (1143), Expect = 1.9e-121
Identity = 239/298 (80.20%), Postives = 249/298 (83.56%), Query Frame = 1


Query: 2   SIPINTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEP 61
           S+ INTMSSPSISQVI+VKLTQENYLLWS QILPYLRSQ LVGFVDGSMP P+QTI VE 
Sbjct: 4   SLQINTMSSPSISQVINVKLTQENYLLWSAQILPYLRSQGLVGFVDGSMPPPNQTITVE- 63

Query: 62  SEEIGNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFAS 121
                          ++WYPQDQLVLSLINSSVTEEVLST+VGITTAREAW  LERQFAS
Sbjct: 64  ---------------SIWYPQDQLVLSLINSSVTEEVLSTVVGITTAREAWDMLERQFAS 123

Query: 122 TSRARAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPD 181
           TSRARAMQ  MELSTIQKKDMTIADYFRKVK LGDTLAAIGKR+EDEELIAYMLQGLG D
Sbjct: 124 TSRARAMQNHMELSTIQKKDMTIADYFRKVKRLGDTLAAIGKRVEDEELIAYMLQGLGLD 183

Query: 182 YDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRG 241
           YDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLR GT EQ   ANNVN +S RGG NG RG
Sbjct: 184 YDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLRNGTLEQFPFANNVNSMSNRGGTNGRRG 243

Query: 242 SRGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAY 300
             GR RQ N G GQ+  T NN GRQPSK QS+S  VCQICGKPNHDALQCWHRFDQAY
Sbjct: 244 --GRGRQSNGGRGQTWHTRNNSGRQPSKAQSNSDKVCQICGKPNHDALQCWHRFDQAY 283

[Close]

BLAST of CmaCh16G006470 vs. NCBI nr
Match: gi|670425354|ref|XP_008653324.1| (PREDICTED: uncharacterized protein LOC103633398 [Zea mays])

HSP 1 Score: 443.7 bits (1140), Expect = 4.2e-121
Identity = 231/357 (64.71%), Postives = 274/357 (76.75%), Query Frame = 1


Query: 6   NTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEEI 65
           ++M +P+ SQ++S+KL  ENYLLW  Q+LPYLRSQ L G +DGS+PAP QT+AV+P+E  
Sbjct: 15  SSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGS 74

Query: 66  GNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRA 125
           G R I INPEFT WY QDQLVLS+INSS++EEVL+T+V  TTAR AW TLER +AS+SRA
Sbjct: 75  GGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRA 134

Query: 126 RAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPL 185
           R MQIRM+L+TIQK D+T A+YFRKVK L DTLAA+GKR+EDEE I+Y+L+GL  DYD L
Sbjct: 135 RIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSL 194

Query: 186 VTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGG---ANGGRGS 245
           VTSITTR D YT+SDVYAH+LS+E R        Q+SS NN NR+  RGG      GRG 
Sbjct: 195 VTSITTRPDTYTISDVYAHLLSFETRQEYHTAVGQISSVNNANRVPSRGGGAFGQNGRGG 254

Query: 246 RGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQVE 305
           RGR  +   G G +R     P R PS   SSSG  CQICGK NH+ALQCWHRFDQAYQ E
Sbjct: 255 RGRGGRSQPGRGNNR----PPARPPSNNSSSSG-TCQICGKGNHNALQCWHRFDQAYQAE 314

Query: 306 NNLKQAALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLS 360
           + +KQAA AT  Y  D NWY+D+GATDHIT+DLERLTTRERYTG D+IQVANGAG S
Sbjct: 315 STVKQAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRERYTGGDKIQVANGAGSS 366

[Close]

BLAST of CmaCh16G006470 vs. NCBI nr
Match: gi|219888481|gb|ACL54615.1| (unknown [Zea mays])

HSP 1 Score: 442.2 bits (1136), Expect = 1.2e-120
Identity = 230/357 (64.43%), Postives = 273/357 (76.47%), Query Frame = 1


Query: 6   NTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEEI 65
           ++M +P+ SQ++S+KL  ENYLLW  Q+LPYLRSQ L G +DGS+PAP QT+AV+P+E  
Sbjct: 15  SSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGS 74

Query: 66  GNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRA 125
           G R I INPEFT WY QDQLVLS+INSS++EEVL+T+V  TTAR AW TLER +AS+SR 
Sbjct: 75  GGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRV 134

Query: 126 RAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPL 185
           R MQIRM+L+TIQK D+T A+YFRKVK L DTLAA+GKR+EDEE I+Y+L+GL  DYD L
Sbjct: 135 RIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSL 194

Query: 186 VTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGG---ANGGRGS 245
           VTSITTR D YT+SDVYAH+LS+E R        Q+SS NN NR+  RGG      GRG 
Sbjct: 195 VTSITTRPDTYTISDVYAHLLSFETRQEYHTAVGQISSVNNANRVPSRGGGAFGQNGRGG 254

Query: 246 RGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQVE 305
           RGR  +   G G +R     P R PS   SSSG  CQICGK NH+ALQCWHRFDQAYQ E
Sbjct: 255 RGRGGRSQPGRGNNR----PPARPPSNNSSSSG-TCQICGKGNHNALQCWHRFDQAYQAE 314

Query: 306 NNLKQAALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAGLS 360
           + +KQAA AT  Y  D NWY+D+GATDHIT+DLERLTTRERYTG D+IQVANGAG S
Sbjct: 315 STVKQAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRERYTGGDKIQVANGAGSS 366

The following BLAST results are available for this feature:

BLAST of CmaCh16G006470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COPIA_DROME	5.5e-12	22.67	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]

BLAST of CmaCh16G006470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A9GRB5_ARUDO	1.3e-134	57.02	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
V7BW74_PHAVU	5.0e-129	77.92	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G139500g PE=4 SV=1	[more]
V7B6D9_PHAVU	1.5e-125	77.85	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G110300g PE=4 SV=1	[more]
V7CSV3_PHAVU	1.3e-121	80.20	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G323600g PE=4 SV=1	[more]
C0PCZ1_MAIZE	2.9e-121	64.71	Uncharacterized protein OS=Zea mays PE=2 SV=1	[more]

BLAST of CmaCh16G006470 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34070.1	5.6e-15	25.29	Retrotransposon gag protein (InterPro:IPR005162)	[more]
AT5G48050.1	4.0e-13	25.86	Retrotransposon gag protein (InterPro:IPR005162)	[more]

BLAST of CmaCh16G006470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|593699628\|ref\|XP_007150263.1\|	7.1e-129	77.92	hypothetical protein PHAVU_005G139500g [Phaseolus vulgaris]	[more]
gi\|593408126\|ref\|XP_007140419.1\|	2.1e-125	77.85	hypothetical protein PHAVU_008G110300g [Phaseolus vulgaris]	[more]
gi\|593794831\|ref\|XP_007160454.1\|	1.9e-121	80.20	hypothetical protein PHAVU_002G323600g [Phaseolus vulgaris]	[more]
gi\|670425354\|ref\|XP_008653324.1\|	4.2e-121	64.71	PREDICTED: uncharacterized protein LOC103633398 [Zea mays]	[more]
gi\|219888481\|gb\|ACL54615.1\|	1.2e-120	64.43	unknown [Zea mays]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006470.1	CmaCh16G006470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 439..491 score: 3.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..261 score: 5.0E-122coord: 278..502 score: 5.0E
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 1..261 score: 5.0E-122coord: 278..502 score: 5.0E
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 79..212 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G006470	Melon (DHL92) v3.6.1	cmamedB350
CmaCh16G006470	Silver-seed gourd	carcmaB1286
CmaCh16G006470	Silver-seed gourd	carcmaB1409
CmaCh16G006470	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G006470	Watermelon (97103) v2	cmawmbB351
CmaCh16G006470	Wax gourd	cmawgoB0432
CmaCh16G006470	Cucurbita maxima (Rimu)	cmacmaB350
CmaCh16G006470	Cucumber (Gy14) v1	cgycmaB0595
CmaCh16G006470	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G006470	Cucurbita moschata (Rifu)	cmacmoB337
CmaCh16G006470	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G006470	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G006470	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G006470	Watermelon (Charleston Gray)	cmawcgB301
CmaCh16G006470	Watermelon (97103) v1	cmawmB307
CmaCh16G006470	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G006470	Cucurbita pepo (Zucchini)	cmacpeB350
CmaCh16G006470	Cucurbita pepo (Zucchini)	cmacpeB354
CmaCh16G006470	Bottle gourd (USVL1VR-Ls)	cmalsiB326
CmaCh16G006470	Cucumber (Gy14) v2	cgybcmaB498