CmaCh16G006220 (gene) Cucurbita maxima (Rimu)

NameCmaCh16G006220
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr16 : 3206113 .. 3208592 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAGCTCGACATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTGTCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCATGTTGGTTATTCGTCAGCACGAGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTCTACAGAGAGCCGACAAGGAATTCTCTGATACCACTTGTTACCATCACGACAATATTTATATAAATATTTATTTATTTATTGGTAGAATATATATATATGTGGATTATTGAAATTTAAATATTTAGAATTTATGATAAGATTAAATTTTTAGCTTTTGAAATGTTATTAATTTTTTTTAATAAATATTATATATTAAAAATGGAAATCCGTGCCATGCCGACAAGTCGAAGAATCGAGTTCCGGAAGGAGCGAGCTATCCCGCCTCGGCTACAGGACATCAATACGTGATATTTGGATGCGATAGCCAACGATTCTCGCCGACTATGATCCTGCTCGAGTCACCATGGTTATTGGTATCACGGCTACGCCATTTGGGAAGAAACTCAGGTGCTGGAAGCTATAATTCACATTTATTATGACTCGATCGTTGATAAGTAGATTTGAGCTTATTTTTTTCTTCTTCTGCAGGAATATGTAAATGTTGAGTTCAAAGCGACGGTTAGTAGCATCTATATCAGGTGTTTATGTTTCGTATTATATTAGACTCGCGATCTTAAGTTTATTTTTGAAGATTTGAGTTCTTGGATTTTCGATTTTATTGTATTTGTTTTCAAGAATTATAAGTTAGGTTAGGTTGATTGTTGCATTGCCTGAAGCTTTGGGAGGTTCGACGGATGAATGAATCCATTACGAATCGCATGTTTTCTCAGAGGATTCATAGTTACTTGATGATTAATCAGATTCAATGATTTGCCACATTACTGAAGATTCTTCCATTATTATTCTGTGTATTTGTTGTAGTGGATGAATGTTACAAGATGAACCATTTGGTAGAACTCTTTGATTTCTTTTGAAGGCGGGTCATACTGCTCAAGCCAGTCCGGAAGAGGCAGAACAAGTGATTCATTGATGCATTCAGATGATTAGCACAGGTACAAATTTTGATTATGAGCAAGTCGGATTATTGCCTATTATTCCAATATAATTGCTTAGATCATCTTGAGTTCAATACAATTATTGAGAGATGTGGAAAGAGCACCATCCAATTGAGTGGGCTGGTTTTTCGTTTATGAAAAAGCTAAAATGGGGGAACTAGAATACTAATGAAACTTATATCTCTTTTATCCCTGAGAAGTCAAATGCAACTAAAATGGGGGAGTTTAGACTCATTAGCCAAGAAGAACCCCTCTCCCCTTTCTTGTTCGCTTCTATAACTAATGTTTTCTGCAGCATTGTGGAAGTTCGTAAAGAAAAATGCATTATCGAAGGCTTTGAAATAGGTGGAGAGGGTCAAAATTTCTACAGATGATACTGTCTTGTTTTGAAAATATGAACATATTAAGCTAGAAATGTAACGGTCTTAAGCCTACCACTAGTAGATATTTTGCTCTTTAGACTTTTCTTTTTGGGCTTCCCCTCAAAGTTTTTAAAGCGCATCTGTTAGGGAGAGGTTTCTACATCCTTATAAAGAATACTTCATTTTCCTCTCTAATTAACGATAAGATCGGATGAAAAATACTGTTATTTTTGAAAATGGCTCTGGCATTACACTTAAAAAGGAACTGCACTGCTCTATGGAAAAACATTATTAGAAGCAAATATGATCACAAGGGCCCTTCATAGCTAGATTCTTCCCAAACTAAATGGATTTGGAAGGAACACAGCACCAGTACATTTTTTTTTGTTTGGCAGTTGGCTCATTGTAGTCTCAACACCATGGACAGTGTTCTGTCCATGTAAGAAATTGTATGTGACAGTTCAAATCCACCACCTGTAGATATTGTCTATTTTGAGCTTTTCTTTTCAGGTTTTCCCTCAAGATTTTTAAACCGTGTCTGTTAGGCAGAGGTTTTTACACCCTTATAAAGAATACTTCGTTTCCCTCTCCAACCAATGTGGGATCGAGAGGGGAACAAAATATTCTTTACAAGTGTGTAGAAACCTCTCCTTAGTAGACGTGTTTTAAAAACTTTGAGAGAAAGATCTAAAGAAAAAATCTTAAGAGGACAAATATCTGTGCTAGCGGTGCCTGAGCTGTTACATCCCAATTAGGTTTATCCACAAATATTTGCCAGGAGTGAAGAAACTAGCAGCCACTTATTTCTCCACTAGTTATTCACTCACAAAGCTTGGATTTTTTATCCTAAAACGCCTAGACGTGGCTTGGTGTCTTCCAAGAAGTCGTTGAAGACGGCCTTTCAGAATTAATCTCCGGTGGATGGCTCAAAGGCAGGGGTTGAGTGATGTGTTCAACTGTGGATACATCTCTCTTTTGGAAAAAATCATTGATTATGCAACA

mRNA sequence

ATGTGGAGCTCGACATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTGTCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCATCCAACGATTCTCGCCGACTATGATCCTGCTCGAGTCACCATGGTTATTGGTATCACGGCTACGCCATTTGGGAAGAAACTCAGGAATATGTAAATGTTGAGTTCAAAGCGACGGTTAGTAGCATCTATATCAGTGGATGAATGTTACAAGATGAACCATTTGGTAGAACTCTTTGATTTCTTTTGAAGGCGGGTCATACTGCTCAAGCCAGTCCGGAAGAGGCAGAACAAGTGATTCATTGATGCATTCAGATGATTAGCACAGCATTGTGGAAGTTCGTAAAGAAAAATGCATTATCGAAGGCTTTGAAATAGGTGGAGAGGGTCAAAATTTCTACAGATGATACTGTCTTGTTTTGAAAATATGAACATATTAAGCTAGAAATGTAACGGTCTTAAGCCTACCACTAGTAGATATTTTGCTCTTTAGACTTTTCTTTTTGGGCTTCCCCTCAAAGTTTTTAAAGCGCATCTGTTAGGGAGAGGTTTCTACATCCTTATAAAGAATACTTCATTTTCCTCTCTAATTAACGATAAGATCGGATGAAAAATACTGTTATTTTTGAAAATGGCTCTGGCATTACACTTAAAAAGGAACTGCACTGCTCTATGGAAAAACATTATTAGAAGCAAATATGATCACAAGGGCCCTTCATAGCTAGATTCTTCCCAAACTAAATGGATTTGGAAGGAACACAGCACCAGTACATTTTTTTTTGTTTGGCAGTTGGCTCATTGTAGTCTCAACACCATGGACAGTGTTCTGTCCATGTAAGAAATTGTATGTGACAGTTCAAATCCACCACCTGTAGATATTGTCTATTTTGAGCTTTTCTTTTCAGGTTTTCCCTCAAGATTTTTAAACCGTGTCTGTTAGGCAGAGGTTTTTACACCCTTATAAAGAATACTTCGTTTCCCTCTCCAACCAATGTGGGATCGAGAGGGGAACAAAATATTCTTTACAAGTGTGTAGAAACCTCTCCTTAGTAGACGTGTTTTAAAAACTTTGAGAGAAAGATCTAAAGAAAAAATCTTAAGAGGACAAATATCTGTGCTAGCGGTGCCTGAGCTGTTACATCCCAATTAGGTTTATCCACAAATATTTGCCAGGAGTGAAGAAACTAGCAGCCACTTATTTCTCCACTAGTTATTCACTCACAAAGCTTGGATTTTTTATCCTAAAACGCCTAGACGTGGCTTGGTGTCTTCCAAGAAGTCGTTGAAGACGGCCTTTCAGAATTAATCTCCGGTGGATGGCTCAAAGGCAGGGGTTGAGTGATGTGTTCAACTGTGGATACATCTCTCTTTTGGAAAAAATCATTGATTATGCAACA

Coding sequence (CDS)

ATGTGGAGCTCGACATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTGTCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCATCCAACGATTCTCGCCGACTATGATCCTGCTCGAGTCACCATGGTTATTGGTATCACGGCTACGCCATTTGGGAAGAAACTCAGGAATATGTAA

Protein sequence

MWSSTCLEAQENVLLLILSPVFDTGSFIALLYLLYSLHPTILADYDPARVTMVIGITATPFGKKLRNM
BLAST of CmaCh16G006220 vs. TrEMBL
Match: F6H8G1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s2608g00010 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-06
Identity = 31/37 (83.78%), Postives = 31/37 (83.78%), Query Frame = 1

Query: 1  MWSSTCLEAQENVLLLILSPVFDTGSFIALLYLLYSL 38
          MWS  CLEAQENVLLLIL PVFDTGSFIA LYL Y L
Sbjct: 1  MWSWACLEAQENVLLLILLPVFDTGSFIANLYLPYLL 37

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
F6H8G1_VITVI3.6e-0683.78Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s2608g00010 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G006220.1CmaCh16G006220.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G006220Carg05743Silver-seed gourdcarcmaB1409
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G006220Wax gourdcmawgoB0432
CmaCh16G006220Wax gourdcmawgoB0441
CmaCh16G006220Cucurbita maxima (Rimu)cmacmaB349
CmaCh16G006220Cucurbita maxima (Rimu)cmacmaB350
CmaCh16G006220Cucumber (Gy14) v1cgycmaB0245
CmaCh16G006220Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G006220Cucurbita moschata (Rifu)cmacmoB336
CmaCh16G006220Cucurbita moschata (Rifu)cmacmoB337
CmaCh16G006220Wild cucumber (PI 183967)cmacpiB342
CmaCh16G006220Wild cucumber (PI 183967)cmacpiB349
CmaCh16G006220Cucumber (Chinese Long) v2cmacuB337
CmaCh16G006220Cucumber (Chinese Long) v2cmacuB345
CmaCh16G006220Melon (DHL92) v3.5.1cmameB301
CmaCh16G006220Melon (DHL92) v3.5.1cmameB310
CmaCh16G006220Watermelon (Charleston Gray)cmawcgB291
CmaCh16G006220Watermelon (Charleston Gray)cmawcgB301
CmaCh16G006220Watermelon (97103) v1cmawmB307
CmaCh16G006220Watermelon (97103) v1cmawmB321
CmaCh16G006220Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G006220Cucurbita pepo (Zucchini)cmacpeB350
CmaCh16G006220Cucurbita pepo (Zucchini)cmacpeB354
CmaCh16G006220Bottle gourd (USVL1VR-Ls)cmalsiB305
CmaCh16G006220Bottle gourd (USVL1VR-Ls)cmalsiB326
CmaCh16G006220Cucumber (Gy14) v2cgybcmaB498
CmaCh16G006220Cucumber (Gy14) v2cgybcmaB748
CmaCh16G006220Melon (DHL92) v3.6.1cmamedB350
CmaCh16G006220Melon (DHL92) v3.6.1cmamedB361
CmaCh16G006220Silver-seed gourdcarcmaB0561
CmaCh16G006220Silver-seed gourdcarcmaB1286
CmaCh16G006220Cucumber (Chinese Long) v3cmacucB0393
CmaCh16G006220Cucumber (Chinese Long) v3cmacucB0410
CmaCh16G006220Watermelon (97103) v2cmawmbB327
CmaCh16G006220Watermelon (97103) v2cmawmbB351