CmaCh16G005480 (gene) Cucurbita maxima (Rimu)

NameCmaCh16G005480
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr16 : 2812983 .. 2814468 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCAAGAGAAACCAAATGATCGTAATGAACTTAGTACCTGGAAGGAGCTGATTGTAGCCACTATGTCCACCACTGAGTCTGGCCAAAATGCCAAGAATTGGAGCATTGTTATAAGTAGCAGGCTCAGTCTGCTCATAATTGTCCCTTTCATCAGCAAAGTTGTCGTAGGCATCAGGCCCACCCACAAGAGCACCGGTGAGAAGGTTGGGGTCGCTTGCCTTTCTGCCATACCATGTGGCATAGCCACCCCTGCAGCTGACAAAGGCAGAATTGACCTTGATGGAAACAATGGAAGATCCCCTGTGGTGGACTTGTCGTGGGTAATTGTTTCCATACCCCACCATGTAACTCGTAGCCCTCGGATTGTCCCCAAGGATGTAATCCACCTGTTTCAATTAGAATTTTAAATTAAACAGACATTCCATCTGATTTAATAATGATAACCCTTTTCTCATTTGATGAATAATAGGTACCTGAGATTGTGCAAAGCGAAGAAGCTCGGAAGGCTGGACACTACCGGCGGCGCACCTCAAGTTAGCGCCGGCAGAAGAAAGATAGTCGGAGTAGACGGTGGCGAGGAAGGCAGCACTAGTAACAAACTGCATATTGTTCCATCTCTGTCGGAAAATAAGACCGGCGGGCGTGGTCTGAACATTGCGAGTACCTTTCTTCATGCAAGAGCACAAGAAATTTTCAGCCTTGTCCTTGTACCTCTGGAACACCGGCCCGTGGTGAGCTGCTTTTCCTTGCAACAAAAACTGCCATCACAAACACCCAAATCACTCTTATAATTTTGTGTTTTGTTGACAATCATTGAGAGGTCACAATTAAGGGAATTATGGGTTTATTAGTAAATACTATCTTTAGGTCTTTGGAAAAGCCCAAAGTAAACTCCACACATCATTGTAGAGCGGAGTAATTCTTAACATGGTATCAAAGTCATGTCCTTAACTTGTGAGTCTCGAAAGTATAATCAAAAGTGACTCAAGAAGTGTCAAACAAATTGTGTACTTTGTTTGAGGGCTCTAGAGAATGAGTTGAGCTTTGATTAAGGAGAGGATCAAAGGCTCCATAGGCCTCGGAAGAAGCTCTATAGTGTACTTTGTTCGAGGAAGATTGTTGAGAATTGTTGGGAGAGGAGTCACACGTCGGCTAATTAAGGAAACCATGGGTTCATTAGGAATACTATCTTCATTTGTATGAAACTTTTCGGTAAAACCAAAATGAAAGTCACGAAAGTTCATGCTGAAAAGGGACAATATCATATGATTCCTAACACTATTCCGGCCATCTTTAGATAATCTTTAAAGAGAAAGAACAAACCTTGGCAACAAGGGTTTGGACACCAGCATATTTGACATCCCAGCCAAATTCAGTCATGCTCCAACCAGTTCCTCCCATGGAGTCCCCATTTTCTCCGAGGTAATTCAAGTAATATTGGTTGTTTGTTGCCTCATACAGCCATGCAGCTGCCCACAGTAA

mRNA sequence

ATGCTTCAAGAGAAACCAAATGATCGTAATGAACTTAGTACCTGGAAGGAGCTGATTGTAGCCACTATGTCCACCACTGAGTCTGGCCAAAATGCCAAGAATTGGAGCATTGTTATAAGTAGCAGGCTCAGTCTGCTCATAATTGTCCCTTTCATCAGCAAAGTTGTCGTAGGCATCAGGCCCACCCACAAGAGCACCGGTGAGAAGGTTGGGGTCGCTTGCCTTTCTGCCATACCATGTGGCATAGCCACCCCTGCAGCTGACAAAGGCAGAATTGACCTTGATGGAAACAATGGAAGATCCCCTGTGGTGGACTTGTCGTGGGTAATTGTTTCCATACCCCACCATGTAACTCGTAGCCCTCGGATTGTCCCCAAGGATGTAATCCACCTGTACCTGAGATTGTGCAAAGCGAAGAAGCTCGGAAGGCTGGACACTACCGGCGGCGCACCTCAAGTTAGCGCCGGCAGAAGAAAGATAGTCGGAGTAGACGGTGGCGAGGAAGGCAGCACTAGTAACAAACTGCATATTGTTCCATCTCTGTCGGAAAATAAGACCGGCGGGCGTGGTCTGAACATTGCGAGTACCTTTCTTCATGCAAGAGCACAAGAAATTTTCAGCCTTGTCCTTGTACCTCTGGAACACCGGCCCGTGCCATGCAGCTGCCCACAGTAA

Coding sequence (CDS)

ATGCTTCAAGAGAAACCAAATGATCGTAATGAACTTAGTACCTGGAAGGAGCTGATTGTAGCCACTATGTCCACCACTGAGTCTGGCCAAAATGCCAAGAATTGGAGCATTGTTATAAGTAGCAGGCTCAGTCTGCTCATAATTGTCCCTTTCATCAGCAAAGTTGTCGTAGGCATCAGGCCCACCCACAAGAGCACCGGTGAGAAGGTTGGGGTCGCTTGCCTTTCTGCCATACCATGTGGCATAGCCACCCCTGCAGCTGACAAAGGCAGAATTGACCTTGATGGAAACAATGGAAGATCCCCTGTGGTGGACTTGTCGTGGGTAATTGTTTCCATACCCCACCATGTAACTCGTAGCCCTCGGATTGTCCCCAAGGATGTAATCCACCTGTACCTGAGATTGTGCAAAGCGAAGAAGCTCGGAAGGCTGGACACTACCGGCGGCGCACCTCAAGTTAGCGCCGGCAGAAGAAAGATAGTCGGAGTAGACGGTGGCGAGGAAGGCAGCACTAGTAACAAACTGCATATTGTTCCATCTCTGTCGGAAAATAAGACCGGCGGGCGTGGTCTGAACATTGCGAGTACCTTTCTTCATGCAAGAGCACAAGAAATTTTCAGCCTTGTCCTTGTACCTCTGGAACACCGGCCCGTGCCATGCAGCTGCCCACAGTAA

Protein sequence

MLQEKPNDRNELSTWKELIVATMSTTESGQNAKNWSIVISSRLSLLIIVPFISKVVVGIRPTHKSTGEKVGVACLSAIPCGIATPAADKGRIDLDGNNGRSPVVDLSWVIVSIPHHVTRSPRIVPKDVIHLYLRLCKAKKLGRLDTTGGAPQVSAGRRKIVGVDGGEEGSTSNKLHIVPSLSENKTGGRGLNIASTFLHARAQEIFSLVLVPLEHRPVPCSCPQ
BLAST of CmaCh16G005480 vs. TrEMBL
Match: A0A0N7KCK4_ORYSJ (Os01g0220150 protein OS=Oryza sativa subsp. japonica GN=Os01g0220150 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.8e-20
Identity = 70/194 (36.08%), Postives = 105/194 (54.12%), Query Frame = 1

Query: 23  MSTTESGQNAKNWSIVISSRLSLLIIVPFISKVVVGIRPTHKSTGEKVGVACLSAIPCGI 82
           M+  E+G++A    +V+  RL LL++VP + +VVV +        E+VGVA    +P  +
Sbjct: 1   MAGGETGEDAHERGVVVGGRLRLLVVVPLVGEVVVLVGAADDGAVEQVGVAAPPPVPARV 60

Query: 83  ATPAADKGRIDLDGNNGRSPVVDLSWVIVSIPHHVTRSPRIVPKDVIHLYL-RLCKAKKL 142
             PAA + R   DG +GR+ VV L  V  +I  HV R PR+ P+DV+HL L    + ++ 
Sbjct: 61  PLPAAHERRAGPDGGDGRAAVVRLPRVDGAIADHVARPPRVAPQDVVHLRLGERQELRRP 120

Query: 143 GRLDTTGGAPQVSAGRRKIVGVDGGEEGSTSNKLHIVPSLSENKTGGRGLNIASTFL-HA 202
           G       AP  +AG  ++VGVDG EE    ++L +VP L    + GR  ++    L  A
Sbjct: 121 GHRPAAARAPHGAAG--EVVGVDGEEERRAGDELDVVPPLVVQHSAGRPPDVVGGVLPEA 180

Query: 203 RAQEIFSLVLVPLE 215
           RA+E   L  V L+
Sbjct: 181 RAREEVRLPPVSLQ 192

BLAST of CmaCh16G005480 vs. TrEMBL
Match: A0A0P0V1P6_ORYSJ (Os01g0313050 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0313050 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08
Identity = 50/189 (26.46%), Postives = 84/189 (44.44%), Query Frame = 1

Query: 29  GQNAKNWSIVISSRLSLLIIVPFISKVVVGIRPTHKSTGEKVGVACLSAIPCGIATPAAD 88
           G+ +    + +  RL +L++   + ++V+ + P+     E VGV   + +  G    AAD
Sbjct: 1   GERSDERRVDVGGRLGVLVVAALVGELVLQVGPSDDGADEDVGVGD-AGVERGEPLRAAD 60

Query: 89  KGRIDLDGNNGRSPVVDLSWVIVSIPHHVTRSPRIVPKDVIHLYLRLCKAKKLGRLDTTG 148
            G +       R  VVD   V+ ++P HV    R+ P+ V+HL  R     + GR D   
Sbjct: 61  PGGVRRHRRQRRRAVVDPPRVLGAVPDHVRHPHRVAPQQVVHLLAR--DGAEAGRRDGGA 120

Query: 149 GAPQVSAGRRKIVGVDGGEEGSTSNKLHI-VPSLSENKTGGRGLNIASTFLHARAQEIFS 208
            A     G  +++GV   +EG+  + LH+ V  L E    G    +     H  A E   
Sbjct: 121 AAGDGGLGEGEVLGVGEQQEGAGGDVLHVAVAELEEEAAAGVLRLVRGGAGHHGADEAVG 180

Query: 209 LVLVPLEHR 217
           + LV ++ R
Sbjct: 181 VALVLVQRR 186

BLAST of CmaCh16G005480 vs. NCBI nr
Match: gi|937895085|dbj|BAS71065.1| (Os01g0220150 [Oryza sativa Japonica Group])

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-20
Identity = 70/194 (36.08%), Postives = 105/194 (54.12%), Query Frame = 1

Query: 23  MSTTESGQNAKNWSIVISSRLSLLIIVPFISKVVVGIRPTHKSTGEKVGVACLSAIPCGI 82
           M+  E+G++A    +V+  RL LL++VP + +VVV +        E+VGVA    +P  +
Sbjct: 1   MAGGETGEDAHERGVVVGGRLRLLVVVPLVGEVVVLVGAADDGAVEQVGVAAPPPVPARV 60

Query: 83  ATPAADKGRIDLDGNNGRSPVVDLSWVIVSIPHHVTRSPRIVPKDVIHLYL-RLCKAKKL 142
             PAA + R   DG +GR+ VV L  V  +I  HV R PR+ P+DV+HL L    + ++ 
Sbjct: 61  PLPAAHERRAGPDGGDGRAAVVRLPRVDGAIADHVARPPRVAPQDVVHLRLGERQELRRP 120

Query: 143 GRLDTTGGAPQVSAGRRKIVGVDGGEEGSTSNKLHIVPSLSENKTGGRGLNIASTFL-HA 202
           G       AP  +AG  ++VGVDG EE    ++L +VP L    + GR  ++    L  A
Sbjct: 121 GHRPAAARAPHGAAG--EVVGVDGEEERRAGDELDVVPPLVVQHSAGRPPDVVGGVLPEA 180

Query: 203 RAQEIFSLVLVPLE 215
           RA+E   L  V L+
Sbjct: 181 RAREEVRLPPVSLQ 192

BLAST of CmaCh16G005480 vs. NCBI nr
Match: gi|937895814|dbj|BAS71794.1| (Os01g0313050, partial [Oryza sativa Japonica Group])

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-08
Identity = 50/189 (26.46%), Postives = 84/189 (44.44%), Query Frame = 1

Query: 29  GQNAKNWSIVISSRLSLLIIVPFISKVVVGIRPTHKSTGEKVGVACLSAIPCGIATPAAD 88
           G+ +    + +  RL +L++   + ++V+ + P+     E VGV   + +  G    AAD
Sbjct: 1   GERSDERRVDVGGRLGVLVVAALVGELVLQVGPSDDGADEDVGVGD-AGVERGEPLRAAD 60

Query: 89  KGRIDLDGNNGRSPVVDLSWVIVSIPHHVTRSPRIVPKDVIHLYLRLCKAKKLGRLDTTG 148
            G +       R  VVD   V+ ++P HV    R+ P+ V+HL  R     + GR D   
Sbjct: 61  PGGVRRHRRQRRRAVVDPPRVLGAVPDHVRHPHRVAPQQVVHLLAR--DGAEAGRRDGGA 120

Query: 149 GAPQVSAGRRKIVGVDGGEEGSTSNKLHI-VPSLSENKTGGRGLNIASTFLHARAQEIFS 208
            A     G  +++GV   +EG+  + LH+ V  L E    G    +     H  A E   
Sbjct: 121 AAGDGGLGEGEVLGVGEQQEGAGGDVLHVAVAELEEEAAAGVLRLVRGGAGHHGADEAVG 180

Query: 209 LVLVPLEHR 217
           + LV ++ R
Sbjct: 181 VALVLVQRR 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0N7KCK4_ORYSJ3.8e-2036.08Os01g0220150 protein OS=Oryza sativa subsp. japonica GN=Os01g0220150 PE=4 SV=1[more]
A0A0P0V1P6_ORYSJ1.9e-0826.46Os01g0313050 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0313050 ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|937895085|dbj|BAS71065.1|5.4e-2036.08Os01g0220150 [Oryza sativa Japonica Group][more]
gi|937895814|dbj|BAS71794.1|2.8e-0826.46Os01g0313050, partial [Oryza sativa Japonica Group][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G005480.1CmaCh16G005480.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G005480Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G005480Cucurbita pepo (Zucchini)cmacpeB350
CmaCh16G005480Bottle gourd (USVL1VR-Ls)cmalsiB300
CmaCh16G005480Bottle gourd (USVL1VR-Ls)cmalsiB321
CmaCh16G005480Bottle gourd (USVL1VR-Ls)cmalsiB325
CmaCh16G005480Cucumber (Gy14) v2cgybcmaB338
CmaCh16G005480Cucumber (Gy14) v2cgybcmaB498
CmaCh16G005480Cucumber (Gy14) v2cgybcmaB620
CmaCh16G005480Melon (DHL92) v3.6.1cmamedB328
CmaCh16G005480Melon (DHL92) v3.6.1cmamedB341
CmaCh16G005480Melon (DHL92) v3.6.1cmamedB350
CmaCh16G005480Melon (DHL92) v3.6.1cmamedB358
CmaCh16G005480Silver-seed gourdcarcmaB0054
CmaCh16G005480Silver-seed gourdcarcmaB0506
CmaCh16G005480Silver-seed gourdcarcmaB0825
CmaCh16G005480Cucumber (Chinese Long) v3cmacucB0379
CmaCh16G005480Cucumber (Chinese Long) v3cmacucB0393
CmaCh16G005480Cucumber (Chinese Long) v3cmacucB0404
CmaCh16G005480Cucumber (Chinese Long) v3cmacucB0407
CmaCh16G005480Watermelon (97103) v2cmawmbB326
CmaCh16G005480Watermelon (97103) v2cmawmbB345
CmaCh16G005480Watermelon (97103) v2cmawmbB353
CmaCh16G005480Wax gourdcmawgoB0427
CmaCh16G005480Wax gourdcmawgoB0437
CmaCh16G005480Cucurbita maxima (Rimu)cmacmaB302
CmaCh16G005480Cucurbita maxima (Rimu)cmacmaB350
CmaCh16G005480Cucumber (Gy14) v1cgycmaB0245
CmaCh16G005480Cucumber (Gy14) v1cgycmaB0831
CmaCh16G005480Cucurbita moschata (Rifu)cmacmoB320
CmaCh16G005480Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G005480Cucurbita moschata (Rifu)cmacmoB337
CmaCh16G005480Wild cucumber (PI 183967)cmacpiB342
CmaCh16G005480Wild cucumber (PI 183967)cmacpiB347
CmaCh16G005480Cucumber (Chinese Long) v2cmacuB337
CmaCh16G005480Cucumber (Chinese Long) v2cmacuB343
CmaCh16G005480Melon (DHL92) v3.5.1cmameB284
CmaCh16G005480Melon (DHL92) v3.5.1cmameB301
CmaCh16G005480Melon (DHL92) v3.5.1cmameB307
CmaCh16G005480Watermelon (Charleston Gray)cmawcgB290
CmaCh16G005480Watermelon (Charleston Gray)cmawcgB303
CmaCh16G005480Watermelon (97103) v1cmawmB310
CmaCh16G005480Watermelon (97103) v1cmawmB319