CmaCh16G004470 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G004470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Mitochondrial inner membrane protease subunit 1
Location	Cma_Chr16 : 2231904 .. 2235330 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCGGCCCAATGATTCCGGCCCATCTCTTCAACTTCGTCTTCACCAAAGGTCGACGATGCTTTCTCCAAGCGAAGAACAGAGAAAGTTCAGAGTGACAGAGAGCTTCCATGGGACAGTGGAGAAGCATAGTAAAGGAGGCTATCGATCGCACAGCCATTATAGCCAAGTTCCTCTGCTTGCTTCACGTTACCAACAACTATCTCTGTTCTCCCACTCTGGTCTGTACTTCTCTCTTACTCCTTCCTCTTCCTCCGCTACCTTTTGTCTCCTATTTCTTGCTTTGATTAATTTGGAAAACTTCAATATCTGGTGGTTTCAGGTGTACGGGCCTAGCATGCTTCCGACCTTGAATCTGACCGGCGATGTTCTTTTGGCTGAACGTGTGTCGCACCGAGTGGGCAGGGTTGGCCCCGGCGACGTCGTGCTGGTTCGATCTCCTCTGAATCCGAGGAAGACCTTGACGAAGCGCATTGTGGGTGTTGAGGGGGATAAGGTCAATTTCTTTCCGGACCCTGCCAATTCCAATAGGTGTCTGACGGCTGTGGTATGGTTTGATGGACCTGAATTTAGTGATCATGATTTGAAATTTGAAAATTCGTTTTGGTTTTGATTTTTGGTTTTTTGGTGTTGTTTGATTTGTTTCTTTGTTTAGTTTTTCTCTTTCTTTTTTGGGGTGGATGCTTAGGTTCCGAAAGGTCATGTGTGGATTCAAGGAGATAATGTGTATGCTTCTAGTGATTCGCGGCATTTCGGACCTGTACCTTATGGTCTGATTGACGGGAAAGTGTTTTTGAGAGTAAGATTTATCAATCATCTTCATCATTACTTCTGCTTTTATTAGTTTTCCCTTCTTTTATGTTGTTCTTGGGGAAATGAATTGTTTTGATCATTGTTTACTTATGTATTAGTTTTCCCTTCTTTTATGTTGTACTTGAGGAAATGAATTGTTTTGATCATTGTTTACTTATGTTTCTTCCTTCAATGGTTGTTATCCTTGAGTTTCCAAATGTTGGTTGGATGGGCTTTTAGTATAACAGATTTGTTTGCCTTTTTTCTGTGCAATCATTTATTTTAATGTTACATTACAAATCTGTTGGAGAAGATTCAAACTGACGACCTAGTGGGGGTCTTAATGCAACCACTTGATTGTGTAATTGTTTACTTGCTATATGCATCGCTATTCATGCAGCTGGTTTTAGGGTACTTGAGTTTGAAAATTTTGGATCTTGAGAAATTTCTAATCTCTCGTGGTGTTTCTATTCACTCATGGTTTATAATTTGGATCTTATTCTAGTAATTTAAGAAGTCAGCAGGATTATGAAAGTTCTCTCTAATTACATGGGGATAATATCTTTCTTCTGTACATTGGAACTTTGCATGGTAGCTTTTTTCTAGACTCGTATGCATTTCTCCCTCATTTCTTTATCTTTCTTGAATATTTCTTTGTTCTTCTGATGTTAGGTCTGGCCACCAGATTGCTTTGGACCATTGGAACACTGAACTCAGATTGGCCTAATTTAAAAGATAAATTGCTGGTATTACGTTAAGCTTAGTTTTTCCTTTCTCATTGTAACTGTTGTCCTTTTGGCTATCTGTTTTGAGGATTAGGTTTATTTATTTACCATTCCTTTACGTCTAAAAGAGTTAAAATCTAATATAATTATTTGTGGGATGGAATTTAGTGTACACATTTCTGTTTTGATCACTAATTCTAATAGATATCGTAGTCTCTTCACTTCACATCAGATTCTTGGACTGGCCTAATGAAGTTCACAATTGATAAAAAAAAAGAAAAAAAAAAATTATACAGCTTTTGAATAGTTCTTTTTTCAAAGGAAAAGGTACCGAGATATGAGATGATGTTGTAATGGCGATTTGATCGAATCTATGGTCAGATAGAAAGTATATAATTTTTAGAGGTATTTGTAAGGTGTGGAGGGAGGTGTTTGATCATGCAAAATATAATAGTTCTCGTTGGGCTTTCATAGATAAGATGTTTAAATTCTACTCCTTTTGGGTTACTTTTTCAAATTGGGGAGGCTTCTTGTATAATTCTTGAATGGGCTAGTGACTTGTGTTTTGGGAATTTATAAGGTTCTTGGGTGGTGGTTGTGAAAGACGGATAATGCTTGGCTCGTGCAAGTATTGAGCTATACAAGATGGTCTTCAATCTAGAAGAAGGTTTTGTAGTCTGTTTATGATGAACAAAAAGTTCAAATGACAATGGAATTGTGTAGCAGTGATGGTTTTTTACAGAAGGGATCTTAGAGGAAGGCAGAGGAGGTAAAGGAGTATCTCTCTTTCTTTTCATAGGCAAACCCATGTCGAAGAAATATGTTGCCAGAGATCTTGAGAGCTAGAAGTAGAGTCTAAATAACTCCACATGAGAGTTGGAAATCTTGAAGTATAGTAAATTTTGATATTCCCAAAAGAATCATCATTTTGACTATATAACATATGGTTACAAATTTTGATATAGGTAGCAAGTATAATGTAACCGCCCAAGTCCACTACTAGCAGATATTGTCTGTTTTGACCTGTTATATATTGTGATCAGCTTCACGGTTTTAAAATGCATCTATTAGGTAGAGGTTTCACATCTTTATAAAGAATGTTTCGTTCCTCTCTCCAACCAATGTGGGATCTTCCATATAACTTGGATCCGTGAAGATAAAGAACAATTGAATTTATTGTTTGTTTCGGTTTAGTTAAATTTGAGAACGTTTCTGGAGTGTTTTCTATTTGATTGCCGTTTGAGTTGTACTAATAAAATAGATTTATAGCCCATAGTATGTCCTGATTTAGCCTCAAATTGGGTTAGGCAAACATTAGGTTAGTGTAATGGGAGTTGTATTTTTTGTACTCCACATGAAATTATGACAGGAAGCATCTCTTTCAAATGCATTGCTGACAATGGGGGGATCTATGCTTCACTTCTTTGGCAGGTGATCCATTTTGGCATTGACATATTTCTCTGTGCTTTTTTTAATTTTCAGGACTTCATTTTGTGGCCATTTTAAATGAGCTATTGCTGAGACCTGGGCCTAGTTCAATATTACATCTTTGCCATTGATCCTTACTTCAATAGCTGTTACTTCTTTGTTAGTAGGTTCAGATTGATCTAAAAGGATATAGATTTCCAGATTTTGCATTTTCAATCCATACAGGTGTAGAGTTCATGTTTCATTTTCACAATCATAAATCCAAATAAGCTTATTTAATTTTAGTTGTTTTAGTTCAAGCCTTGTAGGGCGGGAATCGAATCTCCTTTGAGATGGTAAACGATGCCTCTATTCATTGAGTTATCCTTAGACTAAAGAATCAAACTTATTTGAACGTTGTAAATCTTATCTCGACTAATTTTTTTTAGTCTTTGTTGTAGGAATGTGTTGTTAAATGTCCGATATGGTATTTCTAATGAG

mRNA sequence

ATGGGCCGGCCCAATGATTCCGGCCCATCTCTTCAACTTCGTCTTCACCAAAGGTCGACGATGCTTTCTCCAAGCGAAGAACAGAGAAAGTTCAGAGTGACAGAGAGCTTCCATGGGACAGTGGAGAAGCATAGTAAAGGAGGCTATCGATCGCACAGCCATTATAGCCAAGTTCCTCTGCTTGCTTCACGTTACCAACAACTATCTCTGTTCTCCCACTCTGGTCTGTACTTCTCTCTTACTCCTTCCTCTTCCTCCGCTACCTTTTGTCTCCTATTTCTTGCTTTGATTAATTTGGAAAACTTCAATATCTGGTGGTTTCAGGTGTACGGGCCTAGCATGCTTCCGACCTTGAATCTGACCGGCGATGTTCTTTTGGCTGAACGTGTGTCGCACCGAGTGGGCAGGGTTGGCCCCGGCGACGTCGTGCTGGTTCGATCTCCTCTGAATCCGAGGAAGACCTTGACGAAGCGCATTGTGGGTGTTGAGGGGGATAAGGTCAATTTCTTTCCGGACCCTGCCAATTCCAATAGGTGTCTGACGGCTGTGGTTCCGAAAGGTCATGTGTGGATTCAAGGAGATAATGTGTATGCTTCTAGTGATTCGCGGCATTTCGGACCTGTACCTTATGGTCTGATTGACGGGAAAGTGTTTTTGAGAGTCTGGCCACCAGATTGCTTTGGACCATTGGAACACTGAACTCAGATTGGCCTAATTTAAAAGATAAATTGCTGGTTCTTGGGTGGTGGTTGTGAAAGACGGATAATGCTTGGCTCGTGCAAGTATTGAGCTATACAAGATGGTCTTCAATCTAGAAGAAGGTTTTGTAGTCTGTTTATGATGAACAAAAAGTTCAAATGACAATGGAATTGTGTAGCAGTGATGGTTTTTTACAGAAGGGATCTTAGAGGAAGGCAGAGGAGGTAAAGGAGTATCTCTCTTTCTTTTCATAGGCAAACCCATGTCGAAGAAATATGTTGCCAGAGATCTTGAGAGCTAGAAGTAGAGTCTAAATAACTCCACATGAGAGTTGGAAATCTTGAAGTATAGTAAATTTTGATATTCCCAAAAGAATCATCATTTTGACTATATAACATATGGTTACAAATTTTGATATAGGTAGCAAGTATAATGTAACCGCCCAAGTCCACTACTAGCAGATATTGTCTGTTTTGACCTGTTATATATTGTGATCAGCTTCACGGTTTTAAAATGCATCTATTAGGTAGAGGTTTCACATCTTTATAAAGAATGTTTCGTTCCTCTCTCCAACCAATGTGGGATCTTCCATATAACTTGGATCCGTGAAGATAAAGAACAATTGAATTTATTGTTTGTTTCGGTTTAGTTAAATTTGAGAACGTTTCTGGAGTGTTTTCTATTTGATTGCCGTTTGAGTTGTACTAATAAAATAGATTTATAGCCCATAGTATGTCCTGATTTAGCCTCAAATTGGGTTAGGCAAACATTAGGTTAGTGTAATGGGAGTTGTATTTTTTGTACTCCACATGAAATTATGACAGGAAGCATCTCTTTCAAATGCATTGCTGACAATGGGGGGATCTATGCTTCACTTCTTTGGCAGGTGATCCATTTTGGCATTGACATATTTCTCTGTGCTTTTTTTAATTTTCAGGACTTCATTTTGTGGCCATTTTAAATGAGCTATTGCTGAGACCTGGGCCTAGTTCAATATTACATCTTTGCCATTGATCCTTACTTCAATAGCTGTTACTTCTTTGTTAGTAGGTTCAGATTGATCTAAAAGGATATAGATTTCCAGATTTTGCATTTTCAATCCATACAGGTGTAGAGTTCATGTTTCATTTTCACAATCATAAATCCAAATAAGCTTATTTAATTTTAGTTGTTTTAGTTCAAGCCTTGTAGGGCGGGAATCGAATCTCCTTTGAGATGGTAAACGATGCCTCTATTCATTGAGTTATCCTTAGACTAAAGAATCAAACTTATTTGAACGTTGTAAATCTTATCTCGACTAATTTTTTTTAGTCTTTGTTGTAGGAATGTGTTGTTAAATGTCCGATATGGTATTTCTAATGAG

Coding sequence (CDS)

ATGGGCCGGCCCAATGATTCCGGCCCATCTCTTCAACTTCGTCTTCACCAAAGGTCGACGATGCTTTCTCCAAGCGAAGAACAGAGAAAGTTCAGAGTGACAGAGAGCTTCCATGGGACAGTGGAGAAGCATAGTAAAGGAGGCTATCGATCGCACAGCCATTATAGCCAAGTTCCTCTGCTTGCTTCACGTTACCAACAACTATCTCTGTTCTCCCACTCTGGTCTGTACTTCTCTCTTACTCCTTCCTCTTCCTCCGCTACCTTTTGTCTCCTATTTCTTGCTTTGATTAATTTGGAAAACTTCAATATCTGGTGGTTTCAGGTGTACGGGCCTAGCATGCTTCCGACCTTGAATCTGACCGGCGATGTTCTTTTGGCTGAACGTGTGTCGCACCGAGTGGGCAGGGTTGGCCCCGGCGACGTCGTGCTGGTTCGATCTCCTCTGAATCCGAGGAAGACCTTGACGAAGCGCATTGTGGGTGTTGAGGGGGATAAGGTCAATTTCTTTCCGGACCCTGCCAATTCCAATAGGTGTCTGACGGCTGTGGTTCCGAAAGGTCATGTGTGGATTCAAGGAGATAATGTGTATGCTTCTAGTGATTCGCGGCATTTCGGACCTGTACCTTATGGTCTGATTGACGGGAAAGTGTTTTTGAGAGTCTGGCCACCAGATTGCTTTGGACCATTGGAACACTGA

Protein sequence

MGRPNDSGPSLQLRLHQRSTMLSPSEEQRKFRVTESFHGTVEKHSKGGYRSHSHYSQVPLLASRYQQLSLFSHSGLYFSLTPSSSSATFCLLFLALINLENFNIWWFQVYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPLEH

Homology

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BLAST of CmaCh16G004470 vs. Swiss-Prot
Match: IMP1L_XENTR (Mitochondrial inner membrane protease subunit 1 OS=Xenopus tropicalis GN=immp1l PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.1e-27
Identity = 57/121 (47.11%), Postives = 78/121 (64.46%), Query Frame = 1


Query: 111 GPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFF 170
           GPSM PT+    DVLL + +S     +  GD+++ +SP  P   + KR++G+EGDKV   
Sbjct: 38  GPSMEPTIR-NYDVLLCDNLSRHFFSIHKGDIIVAKSPDKPSVNICKRVIGLEGDKVCMS 97

Query: 171 PDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPL 230
              A   R     VPKGHVW++GDN+  S+DSR +GPVPY LI G++ LRVWP + FGPL
Sbjct: 98  SPSALLKR--HTYVPKGHVWLEGDNLDNSTDSRSYGPVPYALIRGRICLRVWPLESFGPL 155

Query: 231 E 232
           +
Sbjct: 158 K 155

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BLAST of CmaCh16G004470 vs. Swiss-Prot
Match: IMP1L_MOUSE (Mitochondrial inner membrane protease subunit 1 OS=Mus musculus GN=Immp1l PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.1e-26
Identity = 51/119 (42.86%), Postives = 80/119 (67.23%), Query Frame = 1


Query: 111 GPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKV-NF 170
           GPSM PT+    D++ AE +S     +  GD+V+ +SP +P+  + KR++G+EGDK+ + 
Sbjct: 38  GPSMEPTIQ-NSDIVFAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILST 97

Query: 171 FPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFG 229
            P     +R   + VP GHVW++GDN+  S+DSR++GP+PYGLI G++F ++WP   FG
Sbjct: 98  SPSDVFKSR---SYVPTGHVWLEGDNLQNSTDSRYYGPIPYGLIRGRIFFKIWPFSDFG 152

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BLAST of CmaCh16G004470 vs. Swiss-Prot
Match: IMP1L_HUMAN (Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens GN=IMMP1L PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-25
Identity = 50/118 (42.37%), Postives = 79/118 (66.95%), Query Frame = 1


Query: 111 GPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFF 170
           GPSM PT+    D++ AE +S     +  GD+V+ +SP +P+  + KR++G+EGDK+   
Sbjct: 38  GPSMEPTIQ-NSDIVFAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKI-LT 97

Query: 171 PDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFG 229
             P++  +   + VP GHVW++GDN+  S+DSR +GP+PYGLI G++F ++WP   FG
Sbjct: 98  TSPSDFFKS-HSYVPMGHVWLEGDNLQNSTDSRCYGPIPYGLIRGRIFFKIWPLSDFG 152

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BLAST of CmaCh16G004470 vs. Swiss-Prot
Match: IMP1_SCHPO (Mitochondrial inner membrane protease subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp1 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.9e-24
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 111 GPSMLPTLNLTGDVLLAERVSHRVGR-VGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNF 170
           GPSM+PTLN  G+ +L +++  R  R    GDVV+   P + ++ + KRI+G+ GD +  
Sbjct: 33  GPSMMPTLNSGGEFVLLDKLHGRFARSCSVGDVVVSAKPSDSKQHVCKRIIGMPGDTI-- 92

Query: 171 FPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLIDGKVFLRVWP 224
           + DP +SN+ +T  +P GHVW+ GDN+  S DSR++GPVP GLI  KV  RVWP
Sbjct: 93  YVDPTSSNKKIT--IPLGHVWLAGDNIAHSLDSRNYGPVPMGLIKAKVIARVWP 142

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BLAST of CmaCh16G004470 vs. Swiss-Prot
Match: IMP2L_DANRE (Mitochondrial inner membrane protease subunit 2 OS=Danio rerio GN=immp2l PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-19
Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 1


Query: 108 QVYGPSMLPTLNLTG----DVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVE 167
           +V G SM P+LN  G    DV+L  R S R   V  GD+V V SP NP++ + KR++G+E
Sbjct: 37  RVEGASMQPSLNPDGESSPDVVLLNRWSVRNYHVQRGDIVSVLSPKNPQQKIIKRVIGIE 96

Query: 168 GDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLIDGKVFLRVWP 227
           GD   F       NR +   VP GH+WI+GD+   S DS  FGPV  GL+ G+    +WP
Sbjct: 97  GD---FIKTLGYKNRYVR--VPDGHLWIEGDHHGHSFDSNAFGPVSLGLVHGRASHIIWP 156

Query: 228 PDCFGPLE 232
           P  +  +E
Sbjct: 157 PSRWQRIE 159

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BLAST of CmaCh16G004470 vs. TrEMBL
Match: A0A0A0KVI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G082300 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-60
Identity = 115/140 (82.14%), Postives = 123/140 (87.86%), Query Frame = 1


Query: 93  FLALINLENFNIWW-FQVYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNP 152
           FL L+++ N  I     VYGPSMLPTLNLTGDVLLAE VSHRVGRVGPGDVVLVRSP NP
Sbjct: 47  FLCLLHVTNNYICSPTLVYGPSMLPTLNLTGDVLLAEHVSHRVGRVGPGDVVLVRSPRNP 106

Query: 153 RKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYG 212
           RK LTKRIVGVEGDKVNF+PDPANSN+  +AVVPKGHVWIQGDNVYAS DSRHFGPVPYG
Sbjct: 107 RKMLTKRIVGVEGDKVNFYPDPANSNQYQSAVVPKGHVWIQGDNVYASRDSRHFGPVPYG 166

Query: 213 LIDGKVFLRVWPPDCFGPLE 232
           LI+GK FLRVWPPDCFG L+
Sbjct: 167 LIEGKAFLRVWPPDCFGRLD 186

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BLAST of CmaCh16G004470 vs. TrEMBL
Match: A0A059BUU6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03218 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.9e-51
Identity = 99/141 (70.21%), Postives = 115/141 (81.56%), Query Frame = 1


Query: 93  FLALINLENFNIWW-FQVYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNP 152
           FL L+++ N  +     VYGPSMLPTLNLTGDVLLAERVSHR+G+VGPGDVVLVRSP++P
Sbjct: 27  FLCLLHVTNTYVCTPTLVYGPSMLPTLNLTGDVLLAERVSHRLGKVGPGDVVLVRSPVDP 86

Query: 153 RKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYG 212
           RK+LTKR+V + GD+V F  DP NS R  T VVP+GHVWIQGDN+YASSDSR FGPVPYG
Sbjct: 87  RKSLTKRVVAMGGDEVTFVVDPRNSERVRTIVVPRGHVWIQGDNIYASSDSRQFGPVPYG 146

Query: 213 LIDGKVFLRVWPPDCFGPLEH 233
           LI+GK+  RVWP D FG L H
Sbjct: 147 LIEGKMLCRVWPLDGFGSLNH 167

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BLAST of CmaCh16G004470 vs. TrEMBL
Match: B9GGY8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38940g PE=4 SV=2)

HSP 1 Score: 208.0 bits (528), Expect = 1.2e-50
Identity = 96/142 (67.61%), Postives = 115/142 (80.99%), Query Frame = 1


Query: 90  CLL--FLALINL-ENFNIWWFQVYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVR 149
           CL+  FL  ++L  N+ I    VYGPSMLPTLNLTGDVLL E VSHR  +VGPGDVVLVR
Sbjct: 16  CLVAKFLGFLHLTNNYLISPTLVYGPSMLPTLNLTGDVLLVEHVSHRFQKVGPGDVVLVR 75

Query: 150 SPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFG 209
           SPL+P K +TKRIVG+EGD++NF PDP+ ++ C T +VPKGH+WIQGDN+YAS DSRH+G
Sbjct: 76  SPLDPTKMVTKRIVGMEGDQINFLPDPSITDICRTVMVPKGHIWIQGDNMYASCDSRHYG 135

Query: 210 PVPYGLIDGKVFLRVWPPDCFG 229
           PVPYGL+ GK+F RVWPP  FG
Sbjct: 136 PVPYGLVQGKLFFRVWPPSSFG 157

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BLAST of CmaCh16G004470 vs. TrEMBL
Match: A0A067EDY8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031410mg PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 6.2e-50
Identity = 95/139 (68.35%), Postives = 111/139 (79.86%), Query Frame = 1


Query: 93  FLALINLENFNIWW-FQVYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNP 152
           F  L ++ N  +W    V+GPSMLPTLNLTGDV+LAE VSHRVGR+GPGD+V VRSP++P
Sbjct: 21  FFCLFHVTNHYLWSPTLVFGPSMLPTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDP 80

Query: 153 RKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYG 212
            K +TKRIVGVEGD+V +F  P N + C T VVPKGHVWIQGDN+YAS DSR FGPVPYG
Sbjct: 81  NKIVTKRIVGVEGDRVTYF-KPRNGDSCHTVVVPKGHVWIQGDNLYASRDSRQFGPVPYG 140

Query: 213 LIDGKVFLRVWPPDCFGPL 231
           LI+GK F RVWPP+ FG L
Sbjct: 141 LIEGKAFFRVWPPNSFGSL 158

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BLAST of CmaCh16G004470 vs. TrEMBL
Match: E0CRZ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00120 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-48
Identity = 94/139 (67.63%), Postives = 112/139 (80.58%), Query Frame = 1


Query: 93  FLALINLENFNIWW-FQVYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNP 152
           FL ++++ N  I     VYGPSMLPT NLTGDVLL E ++ R+G+V PGDVVLVRSP NP
Sbjct: 27  FLCILHVTNTYICTPTLVYGPSMLPTFNLTGDVLLVENLTVRMGKVRPGDVVLVRSPENP 86

Query: 153 RKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYG 212
           RKT++KRI+G+EGD+V F  DP NSNRC + V+PKGHVWIQGDN+YAS DSR+FGPVPYG
Sbjct: 87  RKTVSKRILGMEGDRVTFMIDPKNSNRCQSVVIPKGHVWIQGDNIYASHDSRNFGPVPYG 146

Query: 213 LIDGKVFLRVWPPDCFGPL 231
           LI GKVF RVWP + FG L
Sbjct: 147 LIQGKVFFRVWPLNGFGSL 165

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BLAST of CmaCh16G004470 vs. TAIR10
Match: AT1G53530.1 (AT1G53530.1 Peptidase S24/S26A/S26B/S26C family protein)

HSP 1 Score: 191.8 bits (486), Expect = 4.7e-49
Identity = 86/139 (61.87%), Postives = 112/139 (80.58%), Query Frame = 1


Query: 93  FLALINL-ENFNIWWFQVYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNP 152
           FL L+++ + + I    V+GPSMLPTLNLTGDV+LAE +SHR G++G GDVVLVRSP +P
Sbjct: 29  FLCLLHVTDRYIISTTHVHGPSMLPTLNLTGDVILAEHLSHRFGKIGLGDVVLVRSPRDP 88

Query: 153 RKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYG 212
           ++ +TKRI+G+EGD++ F  DP   +  ++ +VPKGHVWIQGDN+YAS+DSRHFGPVPY 
Sbjct: 89  KRMVTKRILGLEGDRLTFSADPLVGDASVSVLVPKGHVWIQGDNLYASTDSRHFGPVPYS 148

Query: 213 LIDGKVFLRVWPPDCFGPL 231
           LI+GK  LRVWPP+ FG L
Sbjct: 149 LIEGKALLRVWPPEYFGSL 167

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BLAST of CmaCh16G004470 vs. TAIR10
Match: AT1G29960.1 (AT1G29960.1 Peptidase S24/S26A/S26B/S26C family protein)

HSP 1 Score: 152.9 bits (385), Expect = 2.4e-37
Identity = 69/121 (57.02%), Postives = 88/121 (72.73%), Query Frame = 1


Query: 110 YGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNF 169
           YGPSM PTL+ +G+VLLAER+S R  +   GD+V++RSP NP KT  KR++G+EGD ++F
Sbjct: 44  YGPSMTPTLHPSGNVLLAERISKRYQKPSRGDIVVIRSPENPNKTPIKRVIGIEGDCISF 103

Query: 170 FPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGP 229
             D   S+   T VVPKGHV++QGD  + S DSR+FG VPYGLI G+V  RVWP   FGP
Sbjct: 104 VIDSRKSDESQTIVVPKGHVFVQGDYTHNSRDSRNFGTVPYGLIQGRVLWRVWPFQDFGP 163

Query: 230 L 231
           L
Sbjct: 164 L 164

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BLAST of CmaCh16G004470 vs. TAIR10
Match: AT1G23465.1 (AT1G23465.1 Peptidase S24/S26A/S26B/S26C family protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-35
Identity = 66/112 (58.93%), Postives = 85/112 (75.89%), Query Frame = 1


Query: 110 YGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNF 169
           YGPSM+PTL+ +G++LLAER+S R  +   GD+V++RSP NP KT  KR+VGVEGD ++F
Sbjct: 44  YGPSMIPTLHPSGNMLLAERISKRYQKPSRGDIVVIRSPENPNKTPIKRVVGVEGDCISF 103

Query: 170 FPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLIDGKVFLRV 222
             DP  S+   T VVPKGHV++QGD  + S DSR+FGPVPYGLI G+V  RV
Sbjct: 104 VIDPVKSDESQTIVVPKGHVFVQGDYTHNSRDSRNFGPVPYGLIQGRVLWRV 155

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BLAST of CmaCh16G004470 vs. TAIR10
Match: AT3G08980.1 (AT3G08980.1 Peptidase S24/S26A/S26B/S26C family protein)

HSP 1 Score: 85.1 bits (209), Expect = 6.2e-17
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 1


Query: 109 VYGPSMLPTLN-----LTGDVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVE 168
           V G SM PT N        D +L ++   +  +   GDVV+  SP +      KRIVG+ 
Sbjct: 34  VRGDSMSPTFNPQRNSYLDDYVLVDKFCLKDYKFARGDVVVFSSPTHFGDRYIKRIVGMP 93

Query: 169 GDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLIDGKVFLRVWP 225
           G+ ++   D           VP+GH W++GDN  +S DSR FGP+P GLI G+V   +WP
Sbjct: 94  GEWISSSRDVIR--------VPEGHCWVEGDNKTSSLDSRSFGPIPLGLIQGRVTRVMWP 146

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BLAST of CmaCh16G004470 vs. NCBI nr
Match: gi|659131133|ref|XP_008465526.1| (PREDICTED: mitochondrial inner membrane protease subunit 1 isoform X2 [Cucumis melo])

HSP 1 Score: 245.0 bits (624), Expect = 1.3e-61
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 1


Query: 109 VYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVN 168
           VYGPSMLPTLNLTGDVLLAE VSHRVGRVGPGDVVLVRSP NPRK LTKRIVGVEGDKVN
Sbjct: 14  VYGPSMLPTLNLTGDVLLAEHVSHRVGRVGPGDVVLVRSPRNPRKMLTKRIVGVEGDKVN 73

Query: 169 FFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFG 228
           F+PDPANSN+  +AVVPKGHVWIQGDNVYAS DSRHFGPVPYGLI+GK FLRVWPPDCFG
Sbjct: 74  FYPDPANSNQYQSAVVPKGHVWIQGDNVYASRDSRHFGPVPYGLIEGKAFLRVWPPDCFG 133

Query: 229 PLE 232
           PL+
Sbjct: 134 PLD 136

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BLAST of CmaCh16G004470 vs. NCBI nr
Match: gi|659131128|ref|XP_008465524.1| (PREDICTED: mitochondrial inner membrane protease subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 1.7e-61
Identity = 116/140 (82.86%), Postives = 124/140 (88.57%), Query Frame = 1


Query: 93  FLALINLENFNIWW-FQVYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNP 152
           FL L+++ N  I     VYGPSMLPTLNLTGDVLLAE VSHRVGRVGPGDVVLVRSP NP
Sbjct: 54  FLCLLHVTNNYICSPTLVYGPSMLPTLNLTGDVLLAEHVSHRVGRVGPGDVVLVRSPRNP 113

Query: 153 RKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYG 212
           RK LTKRIVGVEGDKVNF+PDPANSN+  +AVVPKGHVWIQGDNVYAS DSRHFGPVPYG
Sbjct: 114 RKMLTKRIVGVEGDKVNFYPDPANSNQYQSAVVPKGHVWIQGDNVYASRDSRHFGPVPYG 173

Query: 213 LIDGKVFLRVWPPDCFGPLE 232
           LI+GK FLRVWPPDCFGPL+
Sbjct: 174 LIEGKAFLRVWPPDCFGPLD 193

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BLAST of CmaCh16G004470 vs. NCBI nr
Match: gi|778691450|ref|XP_011653280.1| (PREDICTED: mitochondrial inner membrane protease subunit 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 1.5e-60
Identity = 110/123 (89.43%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 109 VYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVN 168
           VYGPSMLPTLNLTGDVLLAE VSHRVGRVGPGDVVLVRSP NPRK LTKRIVGVEGDKVN
Sbjct: 14  VYGPSMLPTLNLTGDVLLAEHVSHRVGRVGPGDVVLVRSPRNPRKMLTKRIVGVEGDKVN 73

Query: 169 FFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFG 228
           F+PDPANSN+  +AVVPKGHVWIQGDNVYAS DSRHFGPVPYGLI+GK FLRVWPPDCFG
Sbjct: 74  FYPDPANSNQYQSAVVPKGHVWIQGDNVYASRDSRHFGPVPYGLIEGKAFLRVWPPDCFG 133

Query: 229 PLE 232
            L+
Sbjct: 134 RLD 136

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BLAST of CmaCh16G004470 vs. NCBI nr
Match: gi|449438943|ref|XP_004137247.1| (PREDICTED: mitochondrial inner membrane protease subunit 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 1.9e-60
Identity = 115/140 (82.14%), Postives = 123/140 (87.86%), Query Frame = 1


Query: 93  FLALINLENFNIWW-FQVYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNP 152
           FL L+++ N  I     VYGPSMLPTLNLTGDVLLAE VSHRVGRVGPGDVVLVRSP NP
Sbjct: 21  FLCLLHVTNNYICSPTLVYGPSMLPTLNLTGDVLLAEHVSHRVGRVGPGDVVLVRSPRNP 80

Query: 153 RKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYG 212
           RK LTKRIVGVEGDKVNF+PDPANSN+  +AVVPKGHVWIQGDNVYAS DSRHFGPVPYG
Sbjct: 81  RKMLTKRIVGVEGDKVNFYPDPANSNQYQSAVVPKGHVWIQGDNVYASRDSRHFGPVPYG 140

Query: 213 LIDGKVFLRVWPPDCFGPLE 232
           LI+GK FLRVWPPDCFG L+
Sbjct: 141 LIEGKAFLRVWPPDCFGRLD 160

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BLAST of CmaCh16G004470 vs. NCBI nr
Match: gi|700198395|gb|KGN53553.1| (hypothetical protein Csa_4G082300 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 1.9e-60
Identity = 115/140 (82.14%), Postives = 123/140 (87.86%), Query Frame = 1


Query: 93  FLALINLENFNIWW-FQVYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNP 152
           FL L+++ N  I     VYGPSMLPTLNLTGDVLLAE VSHRVGRVGPGDVVLVRSP NP
Sbjct: 47  FLCLLHVTNNYICSPTLVYGPSMLPTLNLTGDVLLAEHVSHRVGRVGPGDVVLVRSPRNP 106

Query: 153 RKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNVYASSDSRHFGPVPYG 212
           RK LTKRIVGVEGDKVNF+PDPANSN+  +AVVPKGHVWIQGDNVYAS DSRHFGPVPYG
Sbjct: 107 RKMLTKRIVGVEGDKVNFYPDPANSNQYQSAVVPKGHVWIQGDNVYASRDSRHFGPVPYG 166

Query: 213 LIDGKVFLRVWPPDCFGPLE 232
           LI+GK FLRVWPPDCFG L+
Sbjct: 167 LIEGKAFLRVWPPDCFGRLD 186

The following BLAST results are available for this feature:

BLAST of CmaCh16G004470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IMP1L_XENTR	8.1e-27	47.11	Mitochondrial inner membrane protease subunit 1 OS=Xenopus tropicalis GN=immp1l ...	[more]
IMP1L_MOUSE	3.1e-26	42.86	Mitochondrial inner membrane protease subunit 1 OS=Mus musculus GN=Immp1l PE=1 S...	[more]
IMP1L_HUMAN	2.6e-25	42.37	Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens GN=IMMP1L PE=2 S...	[more]
IMP1_SCHPO	4.9e-24	46.49	Mitochondrial inner membrane protease subunit 1 OS=Schizosaccharomyces pombe (st...	[more]
IMP2L_DANRE	1.2e-19	42.19	Mitochondrial inner membrane protease subunit 2 OS=Danio rerio GN=immp2l PE=2 SV...	[more]

BLAST of CmaCh16G004470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVI4_CUCSA	1.3e-60	82.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G082300 PE=4 SV=1	[more]
A0A059BUU6_EUCGR	1.9e-51	70.21	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03218 PE=4 SV=1	[more]
B9GGY8_POPTR	1.2e-50	67.61	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38940g PE=4 SV=2	[more]
A0A067EDY8_CITSI	6.2e-50	68.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031410mg PE=4 SV=1	[more]
E0CRZ1_VITVI	1.2e-48	67.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00120 PE=4 SV=...	[more]

BLAST of CmaCh16G004470 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53530.1	4.7e-49	61.87	Peptidase S24/S26A/S26B/S26C family protein	[more]
AT1G29960.1	2.4e-37	57.02	Peptidase S24/S26A/S26B/S26C family protein	[more]
AT1G23465.1	1.7e-35	58.93	Peptidase S24/S26A/S26B/S26C family protein	[more]
AT3G08980.1	6.2e-17	38.02	Peptidase S24/S26A/S26B/S26C family protein	[more]

BLAST of CmaCh16G004470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131133\|ref\|XP_008465526.1\|	1.3e-61	90.24	PREDICTED: mitochondrial inner membrane protease subunit 1 isoform X2 [Cucumis m...	[more]
gi\|659131128\|ref\|XP_008465524.1\|	1.7e-61	82.86	PREDICTED: mitochondrial inner membrane protease subunit 1 isoform X1 [Cucumis m...	[more]
gi\|778691450\|ref\|XP_011653280.1\|	1.5e-60	89.43	PREDICTED: mitochondrial inner membrane protease subunit 1 isoform X2 [Cucumis s...	[more]
gi\|449438943\|ref\|XP_004137247.1\|	1.9e-60	82.14	PREDICTED: mitochondrial inner membrane protease subunit 1 isoform X1 [Cucumis s...	[more]
gi\|700198395\|gb\|KGN53553.1\|	1.9e-60	82.14	hypothetical protein Csa_4G082300 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000223	Pept_S26A_signal_pept_1
IPR015927	Peptidase_S24_S26A/B/C
IPR019758	Pept_S26A_signal_pept_1_CS
IPR019759	Peptidase S24/S26A/S26B

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0008236	serine-type peptidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006627	protein processing involved in protein targeting to mitochondrion
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0016020	membrane
molecular_function	GO:0008236	serine-type peptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004470.1	CmaCh16G004470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000223	Peptidase S26A, signal peptidase I	PRINTS	PR00727	LEADERPTASE	coord: 184..203 score: 1.6E-12coord: 155..167 score: 1.6E-12coord: 102..118 score: 1.6
IPR000223	Peptidase S26A, signal peptidase I	PANTHER	PTHR12383	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	coord: 109..228 score: 4.0
IPR000223	Peptidase S26A, signal peptidase I	TIGRFAMs	TIGR02227	TIGR02227	coord: 89..169 score: 5.1
IPR015927	Peptidase S24/S26A/S26B/S26C	unknown	SSF51306	LexA/Signal peptidase	coord: 103..230 score: 1.67
IPR019758	Peptidase S26A, signal peptidase I, conserved site	PROSITE	PS00761	SPASE_I_3	coord: 189..202 scor
IPR019759	Peptidase S24/S26A/S26B	PFAM	PF00717	Peptidase_S24	coord: 108..173 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 230..232 scor
None	No IPR available	PANTHER	PTHR12383:SF23	SUBFAMILY NOT NAMED	coord: 109..228 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G004470	Cucsa.273860	Cucumber (Gy14) v1	cgycmaB0759
CmaCh16G004470	Cla005390	Watermelon (97103) v1	cmawmB308
CmaCh16G004470	Csa4G082300	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G004470	ClCG07G010380	Watermelon (Charleston Gray)	cmawcgB300
CmaCh16G004470	CSPI04G07730	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G004470	CmoCh16G004840	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G004470	Lsi07G008670	Bottle gourd (USVL1VR-Ls)	cmalsiB325
CmaCh16G004470	Cp4.1LG14g03430	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G004470	CsaV3_4G007940	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G004470	Cla97C07G137070	Watermelon (97103) v2	cmawmbB350
CmaCh16G004470	Bhi01G002459	Wax gourd	cmawgoB0437
CmaCh16G004470	CsGy4G007610	Cucumber (Gy14) v2	cgybcmaB498
CmaCh16G004470	Carg11374	Silver-seed gourd	carcmaB0924

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G004470	Cucurbita moschata (Rifu)	cmacmoB340
CmaCh16G004470	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G004470	Cucurbita pepo (Zucchini)	cmacpeB353
CmaCh16G004470	Melon (DHL92) v3.6.1	cmamedB351
CmaCh16G004470	Silver-seed gourd	carcmaB0052
CmaCh16G004470	Cucurbita maxima (Rimu)	cmacmaB353