CmaCh16G002770 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G002770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNuclear cap-binding subunit 1
LocationCma_Chr16 : 1289763 .. 1294388 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGCAGGTTCCGTTAACGCTGTGAATTCTTGGGGAAAGTTTGTCGATTCAATCATCTTGTCCAATCAGTAAGCTGAACCGTACGAGGGAAATTCAGGGAAACTCAGAAAATGGAGAGAGGCGGTGAGGGAGCGGCGGCGGGGACGACGGCAGCGGCGACGGCGGCATCGTCTTCTCAGACCATCAGACCTGGTAGGAGGGTGGATCCTTTGCTTGTAACTTGCAGGTTTTTCAGTGTTGTAACAGCTCTCACTGCCATTCTCTGCATTGTTTCCAACGTTATCGCTGCGATTCGGTCATTTAAGAACAAATCCGATGTACTCACTCTGTTGCTTCTTCGTTAAGTAATTTTTTCAATTGAAAGCGGGATCATGTGTTTGTGTAACTTTTTGGCAGATATTCGATGGTATATTTCGGTGTTATGCAGTTGTGATCGCGTTCTTCGTGGTACTTGCTGAGACGGAATGGGAGTTTATTCTCAAGAACTGGAAGGTTTTGCTTCCGAACCCTAAATTCTTAGTTTCTGAAGTGATTTTACTCCCGACTCTATTTGTTTTCCACTTCAATCTTCCCATTAAATCTTAAAAATGATCAGAAATGAAGGGATATATGGTTTCTTTATGCTTTTCTAGGCAATAATTGATCATTGAAGCTTGAAATCTGCCCCCTCCATACATACAGTTATCTGGCTCCATGTCAAAACTGGTCTTTGTTTGCTGCTATGGTGGTATTTTAATGGTGTCTCAAGTTTTTATTAGTCTGGTGGTCCATTTAGTGTCTAGGAGAGGACTTTTTGTATTGAAGAAAAGGGAAAGTTATGATGGCCTTTTCATTTTCTACATTAATTTGTTCCTATCAACACAACTAAGCATTTCTTTTACACAAATTTATCCTGAAGGTGTGTGTGCAGCAGTCAGTTGGGGTCGGCTTTCGACTGAAACTGACCACGTTGGTTTCCATATATTGGAAAATGACGGGTTTTTCATGTTTGATTGCATCAACCAACCGACCAGTTGATATGTGTGTATGTGTGTTTGTGTATTTGGGATTGTTTGGGCAGAGGGGACGCTGTTGGATACAGGAGATGGATAGCAAAGAACAAAGCCATGAGGGAGACGAGTGAAATGATTGAGGAGGCAAGAATGGGATGACGACTGAGGGAGACGAGAGCTATGGCAGAGAGAGAGTGAGGGAGTGGCAAGGGAGGGAGAGAGAGAGAGAGAATCAAGGGGGAGCGGGGGTGTGCGGTGTGTCACAATTACACTTTCTTGAAACTTTGCAGAGCATGCCGAGACACGGTGCATGGAGAAGCAGCTTGACTGATAGGGAGAGGAGAGTATCAATTGGTTGGTCAGTTTGAGAATTATTGGGCTCGCCTACTAACCGACCTTGCAAAACCGACCCAGACTCACACACACTTAAGCTGACTGATCAAAGTTGGTTCAAACGGTTTCGATCGGTCAGCTTAATTTTTCTGTCTATGTTGCTCACCTACGGCAAAATTTCTTTATTTTATTTGATACATATATTCATGATAAATGTTTCACTCCCTTCCATTCTCTGGGATGTCATACTGCTAGCAAGTATCAAACATTACTTTTTGGCATAGAAACTCCTATTGAAGGAATTATCAAGTGGAATTATATATTCGTTCATAGCAGTTCATTCCCTTCTTAAATTTTTTTGGGATGTCACTGAAACTGCAGTCTGCTATGAAGTACTAAAGTTCGCTATATTCCTTGAAGCTCAGAGATGCATATGATGTCTAATTAGGACTTGCCTGCTGCATCATTTAATTCAATTGGGTTTGTGCATTTCAGGTATTGGAATATTGGGCTGGCCGGGGCATGTTGCAAATCTTGTAAGCTTTTATTTTGATTAGCATTTGAAACTTTTTCCTTTTTATTTTTCTGACTTGTTCCTATGCTCTATTTGAGAATCTTGCATGCACTCGGTCTATTTTGTTACTGAATTGTAAGCCTACGATGAAAAATATACCTATACATGCAACATCAGTTGTTGGTTAGTTGCCATTTTGTTAGTTCAATGGACGGATGACCATTTCCTAGGATGTTAGACTGAGACTTCTGAAATTTACTCCAATAGGAGATTTTGTCGTGCAGTAGAGATATGTACTTACCATGATTATAAATATACAACTGTCCAAGCCCGCCGCTAGCAATATTGTCTTCTTTGAGCGATTAGAAATGGTATCAGAGTCAAACACTAGACGATGTGCCAGCGAGGAGGCTGAGCCCTGAAGGGGGTGGACACGAGGCGGTGTGCCAGCAAGGGTACTAGGCCCCGAAGATGGGTGGATTAGGGGGTCCCATATCAATTAAAGAAGGGAACAAGTGTCAGTGAGGACGCTGGGTCCCGAAGGGGGATGGACTGTGAGATCCCATATCGGTTGGAGAGGGGAACAAAGCATTCTTTATAAGGGTGGAGAAAACTCTCTCCAACAGACGTGTTTTAAAACCTTGAAGGGAAGCTCAAAAGGGAAAACTCAAAAAAGACAATATCTACTAGTGGTGGGCTTGGACTGTTACAGAAAATCTCAACTTGATCAAATAAATTCCACATGAGATCCATTAAATGCATGGATTTGTTGTATCATGAATATTCAATTTGTTTTAAGTTGTAGTTTTTTTTTTTTTTTTTTGCAGTGTTGCAGTAATGACAAGAGCTTTCCCGGCGTATTCTGTCGAGCAGAGAGAGTTTATTCTTCTTCAAGAGGCTGCAAGTTATCTCCTCCTTGCCTGCGGTGCAGTCTATGTTGTATCGGTGAGCCTTGTGAACAACACCTTGTTTCCTAATTTAATCCTAAGGCTTGGAAAAGATGTTTTATATGTTTCTGCTCTTTGCTTGTTGCGTGATCTGTGAAGTTTTGGTAACTCCGAAGGAAAAGCAATATTTTTGATGGTTAAATGGAGATTTACATATTTTCCTTTCTTTGGTATGTTCTATATTTTTTCTGGTTGAGCCAACAGCAAGAGAACACAACTTTTACACTCGTGTTTCACTTAGTTTCAACAAAAAAAAACTTATGTTACCTGTTCATGCACTTGCCCACTAGAAAGTTAGCAAAATAAAAAGCGCATAGCCAAAAAAGGAAACTTTATTCGTATTTGTGCGATAAAGTTTTTATAGATAATACTTGGTTGGAGAAGAACATTAGTTACATCGAGAAACAGAGAGTGTGCTTTATGCAACAAAGTCAAGAAATCAGACACTTGAAAGTTGACATTGCTTGCATCAGTGTATTCTGTATTTCTTTAGAGGTTTATAAGATCCCACATCGGTTATAGAGAGGAACGAAACATTCTTTATAAGGGTGTGGAAACTTCTTCTAGCAGACACTACGTTTTAAAAAACTTGAGGGGAAGCCCCAAAGGAAAAGCTCAAAGAGGACAATATTTGCTAGTGGTGGGCTTGGGCGGTTACAAATGGTATCATAGCCAGACACTGGACGGTGTGCCAGCGAGAACGCTGGGCCCCAAAGGGGGATGGATTGAGAGATCCCCTTGGTTGGAGAGAGGAACGAAACATTTTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACACATTTTAAAAACCTTGAGAGAAAGCCCAAGGAGAACAACATCTGTTAGCGGTGGACTTAGGCGGTTACATTTCATTTTTTGGTTCTCTTTCTCATTGTCTTGTCCCAAAATCTCAATATCCAAGATACTTTCTGTAATTGTGCCTTTCTTCATCCTTAGTATGTCTTTGACTTCACTGAATTTTAGTTTCAGTATGTCTTAGACTAATTATGGGAGGTGCAAGTTGATTCGTGAACCTTCTGTGCACCAAGATGCTAAGTCACATGTGTGTGCGCTATGCTATCAAACATCAGTTAACTAAATTATCATCCCTATGCAAGTATGCATACAGTGTATGAAATATGTGAATACATGCTTGTTTTCTTGGATGACACTAAGTGGAATAATGCATCTATTTGAAATATTCTGTCATGAATCAATTGATTCTAGTTTTTCCTATGAATCTCAAGGGAATTCTATGCATTGGGTTTCTCAAACGTGCTCGTGAAGAGAAGGAGACTTCAAAGGACAGGGTCGTCAAAGATCTTCAGGTAACCATTATTTTATCGGATAGTTCCATAACTCAGTGGGGAGTATGGAGGGATACTAACACTGTCTTGCCATTTTTGTAATGAAATACATTAAGACATATTAGTAAACCATTTGTTTACATAATTTGATCTTAAGGAAGCATAATTTGATCTTAAGGAAGCCATGAATGTGTTGCAGGAGTTGGAAAGACAAAAGCAAGAACTTGAACAGTTGCTCATTTCAGACTCTGTGTGAAACAATTTAAAGACATCCCCATGCATCAGAATATAACTGCACCCACCCGATTCTCATTTCGTCTCCGGGACTGTACGAGCATTTGTGTTGCTTCCCCTTCATAGAGATCTAATCATGTAAATTGTTTCTAACTTGACAATTTGTCCCTGCAGTTATCATGTATTCTGACTGTCTTGACAATTGTCTCGCTGTATTATGAAAAGAATCTGTTTATTGAGACCAAAAAAATGGTGTTTTGCTCTCTAAATTGATGCTGTGACTTCAGTGATTTAGAA

mRNA sequence

GGAGCAGGTTCCGTTAACGCTGTGAATTCTTGGGGAAAGTTTGTCGATTCAATCATCTTGTCCAATCAGTAAGCTGAACCGTACGAGGGAAATTCAGGGAAACTCAGAAAATGGAGAGAGGCGGTGAGGGAGCGGCGGCGGGGACGACGGCAGCGGCGACGGCGGCATCGTCTTCTCAGACCATCAGACCTGGTAGGAGGGTGGATCCTTTGCTTGTAACTTGCAGGTTTTTCAGTGTTGTAACAGCTCTCACTGCCATTCTCTGCATTGTTTCCAACGTTATCGCTGCGATTCGGTCATTTAAGAACAAATCCGATATATTCGATGGTATATTTCGGTGTTATGCAGTTGTGATCGCGTTCTTCGTGGTACTTGCTGAGACGGAATGGGAGTTTATTCTCAAGAACTGGAAGGTATTGGAATATTGGGCTGGCCGGGGCATGTTGCAAATCTTTGTTGCAGTAATGACAAGAGCTTTCCCGGCGTATTCTGTCGAGCAGAGAGAGTTTATTCTTCTTCAAGAGGCTGCAAGTTATCTCCTCCTTGCCTGCGGTGCAGTCTATGTTGTATCGGGAATTCTATGCATTGGGTTTCTCAAACGTGCTCGTGAAGAGAAGGAGACTTCAAAGGACAGGGTCGTCAAAGATCTTCAGGAGTTGGAAAGACAAAAGCAAGAACTTGAACAGTTGCTCATTTCAGACTCTGTGTGAAACAATTTAAAGACATCCCCATGCATCAGAATATAACTGCACCCACCCGATTCTCATTTCGTCTCCGGGACTGTACGAGCATTTGTGTTGCTTCCCCTTCATAGAGATCTAATCATGTAAATTGTTTCTAACTTGACAATTTGTCCCTGCAGTTATCATGTATTCTGACTGTCTTGACAATTGTCTCGCTGTATTATGAAAAGAATCTGTTTATTGAGACCAAAAAAATGGTGTTTTGCTCTCTAAATTGATGCTGTGACTTCAGTGATTTAGAA

Coding sequence (CDS)

ATGGAGAGAGGCGGTGAGGGAGCGGCGGCGGGGACGACGGCAGCGGCGACGGCGGCATCGTCTTCTCAGACCATCAGACCTGGTAGGAGGGTGGATCCTTTGCTTGTAACTTGCAGGTTTTTCAGTGTTGTAACAGCTCTCACTGCCATTCTCTGCATTGTTTCCAACGTTATCGCTGCGATTCGGTCATTTAAGAACAAATCCGATATATTCGATGGTATATTTCGGTGTTATGCAGTTGTGATCGCGTTCTTCGTGGTACTTGCTGAGACGGAATGGGAGTTTATTCTCAAGAACTGGAAGGTATTGGAATATTGGGCTGGCCGGGGCATGTTGCAAATCTTTGTTGCAGTAATGACAAGAGCTTTCCCGGCGTATTCTGTCGAGCAGAGAGAGTTTATTCTTCTTCAAGAGGCTGCAAGTTATCTCCTCCTTGCCTGCGGTGCAGTCTATGTTGTATCGGGAATTCTATGCATTGGGTTTCTCAAACGTGCTCGTGAAGAGAAGGAGACTTCAAAGGACAGGGTCGTCAAAGATCTTCAGGAGTTGGAAAGACAAAAGCAAGAACTTGAACAGTTGCTCATTTCAGACTCTGTGTGA

Protein sequence

MERGGEGAAAGTTAAATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAAIRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKVLEYWAGRGMLQIFVAVMTRAFPAYSVEQREFILLQEAASYLLLACGAVYVVSGILCIGFLKRAREEKETSKDRVVKDLQELERQKQELEQLLISDSV
Homology
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BLAST of CmaCh16G002770 vs. TrEMBL
Match: A0A0A0KYH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182250 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.1e-84
Identity = 172/200 (86.00%), Postives = 186/200 (93.00%), Query Frame = 1 

Query: 1   MERGGEGAAA-GTTAAATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIA 60
           MER GEGA A    A+++++SSSQ  RP R VDPLLVTCRFFSV+TALTAILCIVSNVI+
Sbjct: 1   MERNGEGAPALAPAASSSSSSSSQITRPRRSVDPLLVTCRFFSVITALTAILCIVSNVIS 60

Query: 61  AIRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKVLEYWAGRGMLQIFVAVM 120
           AIRSFKN+SDIFDGIFRCYAVVIAFF VLAETEWEFI KNWKVLEYWAGRGMLQIFVAVM
Sbjct: 61  AIRSFKNQSDIFDGIFRCYAVVIAFFAVLAETEWEFIFKNWKVLEYWAGRGMLQIFVAVM 120

Query: 121 TRAFPAYSVEQREFILLQEAASYLLLACGAVYVVSGILCIGFLKRAREEKETSKDRVVKD 180
           TRAFP YSVEQRE ILLQ+AASYLLLACGAVYVVSGILCIGFLKRARE+KET+KD+VVKD
Sbjct: 121 TRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKDKVVKD 180

Query: 181 LQELERQKQELEQLLISDSV 200
           LQELERQKQELEQLLIS++V
Sbjct: 181 LQELERQKQELEQLLISETV 200

[Close]
BLAST of CmaCh16G002770 vs. TrEMBL
Match: B9IJ69_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s07070g PE=4 SV=2)

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63
Identity = 125/187 (66.84%), Postives = 162/187 (86.63%), Query Frame = 1 

Query: 13  TAAATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAAIRSFKNKSDIFD 72
           +++++ A ++  +RPG   DPLLV CR FS VT+LTAILC+  NV++A+RSFK+ SD+FD
Sbjct: 19  SSSSSRARATALVRPGP--DPLLVICRCFSFVTSLTAILCVAVNVLSAVRSFKDGSDVFD 78

Query: 73  GIFRCYAVVIAFFVVLAETEWEFILKNWKVLEYWAGRGMLQIFVAVMTRAFPAYSVEQRE 132
           GIFRCYAVVIAF VV+AETEW F++K WK+LEYWAGRGMLQIFVAVMTRAFP YS  Q+E
Sbjct: 79  GIFRCYAVVIAFIVVVAETEWGFVIKFWKILEYWAGRGMLQIFVAVMTRAFPDYSSNQKE 138

Query: 133 FILLQEAASYLLLACGAVYVVSGILCIGFLKRAREEKETSKDRVVKDLQELERQKQELEQ 192
            +LLQ  ASY+LLACG VYV+SGILCIGFLKR+R++KET++++ VKDL+ELER+++ELEQ
Sbjct: 139 LVLLQNIASYMLLACGLVYVISGILCIGFLKRSRQKKETTREQAVKDLEELERRREELEQ 198

Query: 193 LLISDSV 200
           LLI++ +
Sbjct: 199 LLIAERI 203

[Close]
BLAST of CmaCh16G002770 vs. TrEMBL
Match: A0A0D2V9Q5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G055400 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.2e-63
Identity = 131/199 (65.83%), Postives = 161/199 (80.90%), Query Frame = 1 

Query: 1   MERGGEGAAAGTTAAATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAA 60
           M R G+    G       ASSS  +R   R DP LV CR FSV+T+LTAILCI  NV++A
Sbjct: 1   MARSGDPQGDGGEPVLPRASSSTRLRS--RPDPFLVVCRCFSVITSLTAILCIAVNVLSA 60

Query: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKVLEYWAGRGMLQIFVAVMT 120
           +RSFKN +D+FDGIFRCYAVVIAFFVVLAETEW FI+K WKVLEYWAGRGMLQIFVAVMT
Sbjct: 61  VRSFKNGADVFDGIFRCYAVVIAFFVVLAETEWGFIIKFWKVLEYWAGRGMLQIFVAVMT 120

Query: 121 RAFPAYSVEQREFILLQEAASYLLLACGAVYVVSGILCIGFLKRAREEKETSKDRVVKDL 180
           RAFP Y+  Q++ +LLQ  ASY+LLACG VYV SGILCIGFLKR+R++KE ++++ V+DL
Sbjct: 121 RAFPDYTERQKDLVLLQNIASYMLLACGVVYVFSGILCIGFLKRSRQQKEITREQAVQDL 180

Query: 181 QELERQKQELEQLLISDSV 200
           +ELER+++ELEQLL+++ V
Sbjct: 181 EELERRREELEQLLLAERV 197

[Close]
BLAST of CmaCh16G002770 vs. TrEMBL
Match: A0A061E257_THECC (Vacuole OS=Theobroma cacao GN=TCM_007374 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 7.1e-63
Identity = 130/199 (65.33%), Postives = 162/199 (81.41%), Query Frame = 1 

Query: 1   MERGGEGAAAGTTAAATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAA 60
           M R G+    G    A   SSS  +R   R DP L+ CR FS++T+LTAILCI  NV++A
Sbjct: 1   MARNGDPEGEGVLPRA---SSSTRVRA--RPDPFLLVCRCFSLITSLTAILCIAVNVLSA 60

Query: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKVLEYWAGRGMLQIFVAVMT 120
           +RSFKN SD+FDGIFRCYAVVIAFFVV+AETEW FI+K WKVLEYWAGRGMLQIFVAVMT
Sbjct: 61  VRSFKNGSDVFDGIFRCYAVVIAFFVVVAETEWAFIIKFWKVLEYWAGRGMLQIFVAVMT 120

Query: 121 RAFPAYSVEQREFILLQEAASYLLLACGAVYVVSGILCIGFLKRAREEKETSKDRVVKDL 180
           RAFP YS  Q++ +LLQ  ASY+LLACG VYV+SG+LCIGFLKR+R++KE ++++ VKDL
Sbjct: 121 RAFPDYSESQKDLVLLQNIASYMLLACGLVYVISGLLCIGFLKRSRQQKEITREQAVKDL 180

Query: 181 QELERQKQELEQLLISDSV 200
           +ELER+++ELEQLL+++ V
Sbjct: 181 EELERRREELEQLLLAERV 194

[Close]
BLAST of CmaCh16G002770 vs. TrEMBL
Match: A0A059BCF5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00989 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.6e-62
Identity = 126/183 (68.85%), Postives = 153/183 (83.61%), Query Frame = 1 

Query: 16  ATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAAIRSFKNKSDIFDGIF 75
           ++ + SS   R   R DP LV CR FSVVTA+ AILCI  NV++AIRSF+N  D+FDGIF
Sbjct: 23  SSGSGSSDRRRVRARPDPFLVVCRCFSVVTAICAILCITVNVLSAIRSFENGYDVFDGIF 82

Query: 76  RCYAVVIAFFVVLAETEWEFILKNWKVLEYWAGRGMLQIFVAVMTRAFPAYSVEQREFIL 135
           RCYAVVIAFFVVLAETEW FI+K WKVLEYW GRGMLQIFVAVMTRAFP Y+ E++E +L
Sbjct: 83  RCYAVVIAFFVVLAETEWGFIIKFWKVLEYWVGRGMLQIFVAVMTRAFPNYTGEEQELVL 142

Query: 136 LQEAASYLLLACGAVYVVSGILCIGFLKRAREEKETSKDRVVKDLQELERQKQELEQLLI 195
           LQ  A+Y+LLACG VY+VSGILCIG LKR+R++KE S+D+ VKDL+ELER+++ELEQLLI
Sbjct: 143 LQNIAAYMLLACGVVYIVSGILCIGLLKRSRQKKEISRDQAVKDLEELERRREELEQLLI 202

Query: 196 SDS 199
            ++
Sbjct: 203 VET 205

[Close]
BLAST of CmaCh16G002770 vs. TAIR10
Match: AT4G33625.1 (AT4G33625.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 240.0 bits (611), Expect = 1.3e-63
Identity = 121/180 (67.22%), Postives = 150/180 (83.33%), Query Frame = 1 

Query: 16  ATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAAIRSFKNKSDIFDGIF 75
           A  +S S  ++ G R DP LV CR FS+VT+L AILC+V NV+AA+RSF++  D+FDGIF
Sbjct: 12  AGPSSGSAKLKLGNRADPFLVVCRCFSLVTSLIAILCVVVNVLAAVRSFRDSHDLFDGIF 71

Query: 76  RCYAVVIAFFVVLAETEWEFILKNWKVLEYWAGRGMLQIFVAVMTRAFPAYSVEQREFIL 135
           RCYAVVIA FVVL ETEW FILK  KVLEYWAGRGMLQIFVAVMTRAFP Y  ++++ +L
Sbjct: 72  RCYAVVIACFVVLVETEWGFILKFSKVLEYWAGRGMLQIFVAVMTRAFPDYMTQKKDLLL 131

Query: 136 LQEAASYLLLACGAVYVVSGILCIGFLKRAREEKETSKDRVVKDLQELERQKQELEQLLI 195
           LQ  ASYLLLACG +YV+SG+LCIGFLKRAR++KE S+++ VKDL+E+ R+K+ELEQLL+
Sbjct: 132 LQNIASYLLLACGVIYVISGVLCIGFLKRARQQKEVSREQAVKDLEEIARRKEELEQLLL 191

[Close]
BLAST of CmaCh16G002770 vs. NCBI nr
Match: gi|449459544|ref|XP_004147506.1| (PREDICTED: uncharacterized protein LOC101214901 [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 1.6e-84
Identity = 172/200 (86.00%), Postives = 186/200 (93.00%), Query Frame = 1 

Query: 1   MERGGEGAAA-GTTAAATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIA 60
           MER GEGA A    A+++++SSSQ  RP R VDPLLVTCRFFSV+TALTAILCIVSNVI+
Sbjct: 1   MERNGEGAPALAPAASSSSSSSSQITRPRRSVDPLLVTCRFFSVITALTAILCIVSNVIS 60

Query: 61  AIRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKVLEYWAGRGMLQIFVAVM 120
           AIRSFKN+SDIFDGIFRCYAVVIAFF VLAETEWEFI KNWKVLEYWAGRGMLQIFVAVM
Sbjct: 61  AIRSFKNQSDIFDGIFRCYAVVIAFFAVLAETEWEFIFKNWKVLEYWAGRGMLQIFVAVM 120

Query: 121 TRAFPAYSVEQREFILLQEAASYLLLACGAVYVVSGILCIGFLKRAREEKETSKDRVVKD 180
           TRAFP YSVEQRE ILLQ+AASYLLLACGAVYVVSGILCIGFLKRARE+KET+KD+VVKD
Sbjct: 121 TRAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKDKVVKD 180

Query: 181 LQELERQKQELEQLLISDSV 200
           LQELERQKQELEQLLIS++V
Sbjct: 181 LQELERQKQELEQLLISETV 200

[Close]
BLAST of CmaCh16G002770 vs. NCBI nr
Match: gi|659108936|ref|XP_008454462.1| (PREDICTED: uncharacterized protein LOC103494861 [Cucumis melo])

HSP 1 Score: 320.9 bits (821), Expect = 1.6e-84
Identity = 171/199 (85.93%), Postives = 187/199 (93.97%), Query Frame = 1 

Query: 1   MERGGEGAAAGTTAAATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAA 60
           MER GEGA A +++++++ SSSQ  RP R VDPLLVTCRFFSV+TALTAILCIVSNVI+A
Sbjct: 1   MERNGEGAPAASSSSSSS-SSSQITRPRRSVDPLLVTCRFFSVITALTAILCIVSNVISA 60

Query: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKVLEYWAGRGMLQIFVAVMT 120
           IRSFKN+SDIFDGIFRCYAVVI FFVVLAETEWEFI KNWKVLEYWAGRGMLQIFVAVMT
Sbjct: 61  IRSFKNQSDIFDGIFRCYAVVITFFVVLAETEWEFIFKNWKVLEYWAGRGMLQIFVAVMT 120

Query: 121 RAFPAYSVEQREFILLQEAASYLLLACGAVYVVSGILCIGFLKRAREEKETSKDRVVKDL 180
           RAFP YSVEQRE ILLQ+AASYLLLACGAVYVVSGILCIGFLKRARE+KET+KD+VVKDL
Sbjct: 121 RAFPVYSVEQRELILLQDAASYLLLACGAVYVVSGILCIGFLKRAREKKETAKDKVVKDL 180

Query: 181 QELERQKQELEQLLISDSV 200
           QELERQKQELEQLLIS++V
Sbjct: 181 QELERQKQELEQLLISETV 198

[Close]
BLAST of CmaCh16G002770 vs. NCBI nr
Match: gi|1009151853|ref|XP_015893776.1| (PREDICTED: uncharacterized protein LOC107427886 [Ziziphus jujuba])

HSP 1 Score: 252.7 bits (644), Expect = 5.4e-64
Identity = 131/196 (66.84%), Postives = 161/196 (82.14%), Query Frame = 1 

Query: 2   ERGGEGAAAGTTAAATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAAI 61
           E  GEG   G +    +++S  + R   R DP LV C+ FSV+T+LTAILCI  N+++AI
Sbjct: 4   EGEGEGGGGGESLTRVSSTSGGSTRLRTRPDPFLVVCKCFSVITSLTAILCIAVNILSAI 63

Query: 62  RSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKVLEYWAGRGMLQIFVAVMTR 121
           RSFK+ SD+FDGIFRCYAV+IA FVVLAETEWEFI+K WKVLEYWAGRGMLQIFVAVMTR
Sbjct: 64  RSFKDGSDVFDGIFRCYAVLIAAFVVLAETEWEFIIKFWKVLEYWAGRGMLQIFVAVMTR 123

Query: 122 AFPAYSVEQREFILLQEAASYLLLACGAVYVVSGILCIGFLKRAREEKETSKDRVVKDLQ 181
           AFP YS +Q++ ILLQ  ASYLLLACG VYV  GILCIGFLKR+R++KET++++ VKDL+
Sbjct: 124 AFPDYSSKQKDLILLQNIASYLLLACGVVYVFMGILCIGFLKRSRQQKETTREQAVKDLE 183

Query: 182 ELERQKQELEQLLISD 198
           ELER+++ELEQLLI +
Sbjct: 184 ELERRREELEQLLIEE 199

[Close]
BLAST of CmaCh16G002770 vs. NCBI nr
Match: gi|566211933|ref|XP_002323720.2| (hypothetical protein POPTR_0017s07070g [Populus trichocarpa])

HSP 1 Score: 251.1 bits (640), Expect = 1.6e-63
Identity = 125/187 (66.84%), Postives = 162/187 (86.63%), Query Frame = 1 

Query: 13  TAAATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAAIRSFKNKSDIFD 72
           +++++ A ++  +RPG   DPLLV CR FS VT+LTAILC+  NV++A+RSFK+ SD+FD
Sbjct: 19  SSSSSRARATALVRPGP--DPLLVICRCFSFVTSLTAILCVAVNVLSAVRSFKDGSDVFD 78

Query: 73  GIFRCYAVVIAFFVVLAETEWEFILKNWKVLEYWAGRGMLQIFVAVMTRAFPAYSVEQRE 132
           GIFRCYAVVIAF VV+AETEW F++K WK+LEYWAGRGMLQIFVAVMTRAFP YS  Q+E
Sbjct: 79  GIFRCYAVVIAFIVVVAETEWGFVIKFWKILEYWAGRGMLQIFVAVMTRAFPDYSSNQKE 138

Query: 133 FILLQEAASYLLLACGAVYVVSGILCIGFLKRAREEKETSKDRVVKDLQELERQKQELEQ 192
            +LLQ  ASY+LLACG VYV+SGILCIGFLKR+R++KET++++ VKDL+ELER+++ELEQ
Sbjct: 139 LVLLQNIASYMLLACGLVYVISGILCIGFLKRSRQKKETTREQAVKDLEELERRREELEQ 198

Query: 193 LLISDSV 200
           LLI++ +
Sbjct: 199 LLIAERI 203

[Close]
BLAST of CmaCh16G002770 vs. NCBI nr
Match: gi|823260259|ref|XP_012462853.1| (PREDICTED: uncharacterized protein LOC105782576 isoform X1 [Gossypium raimondii])

HSP 1 Score: 249.6 bits (636), Expect = 4.6e-63
Identity = 131/199 (65.83%), Postives = 161/199 (80.90%), Query Frame = 1 

Query: 1   MERGGEGAAAGTTAAATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAA 60
           M R G+    G       ASSS  +R   R DP LV CR FSV+T+LTAILCI  NV++A
Sbjct: 1   MARSGDPQGDGGEPVLPRASSSTRLRS--RPDPFLVVCRCFSVITSLTAILCIAVNVLSA 60

Query: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKVLEYWAGRGMLQIFVAVMT 120
           +RSFKN +D+FDGIFRCYAVVIAFFVVLAETEW FI+K WKVLEYWAGRGMLQIFVAVMT
Sbjct: 61  VRSFKNGADVFDGIFRCYAVVIAFFVVLAETEWGFIIKFWKVLEYWAGRGMLQIFVAVMT 120

Query: 121 RAFPAYSVEQREFILLQEAASYLLLACGAVYVVSGILCIGFLKRAREEKETSKDRVVKDL 180
           RAFP Y+  Q++ +LLQ  ASY+LLACG VYV SGILCIGFLKR+R++KE ++++ V+DL
Sbjct: 121 RAFPDYTERQKDLVLLQNIASYMLLACGVVYVFSGILCIGFLKRSRQQKEITREQAVQDL 180

Query: 181 QELERQKQELEQLLISDSV 200
           +ELER+++ELEQLL+++ V
Sbjct: 181 EELERRREELEQLLLAERV 197

The following BLAST results are available for this feature:
BLAST of CmaCh16G002770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh16G002770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYH6_CUCSA1.1e-8486.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182250 PE=4 SV=1[more]
B9IJ69_POPTR1.1e-6366.84Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s07070g PE=4 SV=2[more]
A0A0D2V9Q5_GOSRA3.2e-6365.83Uncharacterized protein OS=Gossypium raimondii GN=B456_013G055400 PE=4 SV=1[more]
A0A061E257_THECC7.1e-6365.33Vacuole OS=Theobroma cacao GN=TCM_007374 PE=4 SV=1[more]
A0A059BCF5_EUCGR4.6e-6268.85Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00989 PE=4 SV=1[more]
BLAST of CmaCh16G002770 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G33625.11.3e-6367.22 FUNCTIONS IN: molecular_function unknown[more]
BLAST of CmaCh16G002770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459544|ref|XP_004147506.1|1.6e-8486.00PREDICTED: uncharacterized protein LOC101214901 [Cucumis sativus][more]
gi|659108936|ref|XP_008454462.1|1.6e-8485.93PREDICTED: uncharacterized protein LOC103494861 [Cucumis melo][more]
gi|1009151853|ref|XP_015893776.1|5.4e-6466.84PREDICTED: uncharacterized protein LOC107427886 [Ziziphus jujuba][more]
gi|566211933|ref|XP_002323720.2|1.6e-6366.84hypothetical protein POPTR_0017s07070g [Populus trichocarpa][more]
gi|823260259|ref|XP_012462853.1|4.6e-6365.83PREDICTED: uncharacterized protein LOC105782576 isoform X1 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013714Golgi_TVP15
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G002770.1CmaCh16G002770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013714Golgi apparatus membrane protein TVP15PFAMPF08507COPI_assoccoord: 38..170
score: 1.1
NoneNo IPR availableunknownCoilCoilcoord: 162..199
scor
NoneNo IPR availablePANTHERPTHR34965FAMILY NOT NAMEDcoord: 3..198
score: 4.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G002770Cucsa.331850Cucumber (Gy14) v1cgycmaB0910
CmaCh16G002770Cla006496Watermelon (97103) v1cmawmB293
CmaCh16G002770Csa4G182250Cucumber (Chinese Long) v2cmacuB338
CmaCh16G002770MELO3C018054Melon (DHL92) v3.5.1cmameB303
CmaCh16G002770ClCG10G009630Watermelon (Charleston Gray)cmawcgB280
CmaCh16G002770CSPI04G11840Wild cucumber (PI 183967)cmacpiB343
CmaCh16G002770CmoCh16G002970Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G002770Lsi03G009750Bottle gourd (USVL1VR-Ls)cmalsiB307
CmaCh16G002770Cp4.1LG14g04830Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G002770MELO3C018054.2Melon (DHL92) v3.6.1cmamedB354
CmaCh16G002770CsaV3_4G014750Cucumber (Chinese Long) v3cmacucB0394
CmaCh16G002770Cla97C10G192700Watermelon (97103) v2cmawmbB332
CmaCh16G002770Bhi11G000868Wax gourdcmawgoB0410
CmaCh16G002770CsGy4G011260Cucumber (Gy14) v2cgybcmaB499
CmaCh16G002770Carg19727Silver-seed gourdcarcmaB0406
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G002770Watermelon (97103) v2cmawmbB339
CmaCh16G002770Cucurbita maxima (Rimu)cmacmaB135
CmaCh16G002770Cucurbita maxima (Rimu)cmacmaB342
CmaCh16G002770Cucurbita maxima (Rimu)cmacmaB351
CmaCh16G002770Cucurbita moschata (Rifu)cmacmoB330
CmaCh16G002770Cucurbita moschata (Rifu)cmacmoB338
CmaCh16G002770Cucurbita pepo (Zucchini)cmacpeB351
CmaCh16G002770Melon (DHL92) v3.6.1cmamedB331
CmaCh16G002770Silver-seed gourdcarcmaB0400
CmaCh16G002770Silver-seed gourdcarcmaB0526