CmaCh16G002380 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G002380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPectin lyase-like superfamily protein, putative
LocationCma_Chr16 : 1092849 .. 1093449 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTCTTTTTGTCTTGTTTTTTTTTTTTTTTATTTTCTGTTGTTGTTTTATGCTCTTTGACTGTATCAGCTTCAGTCTTACTTCAATGTTCTTGATTATGGAGCCACTGGTAATGACAAAACAGATGACTCGGAAGTAAGGAGTTTAAAGTACTTTTGATCGATTCTCTTTTTATTATTATAATAACTTGTTTTCTTTGTGTTTCTCTGTGTCAAGGCTTTTTTGAAAGCTTGGAATGACGCGTGTGCAGCAACAAAAGATAACCCAACGTTATGTATACCATTTGGAAAAACTTACCTGTTGAAACATCTCAAATTCCAAGGCCCTTGCAAGTCCAACCAAGTCAATTTTGACGTAATTTATCTTATCCCAGAGTACTCAGTAACTTCCTTTAAAAAATTAAGGAGAAAATAGTTTGAATTTTTTTTATTGTTTTTAAAAAATTATGCTAAATTCATCAATATTAAATATTTTCAAACATGAAATTGAAAATATATTGGACATTTCACGTTTTTTATTATTATTAACTTTAATGTTAAATATTGTAGGTGATGATTGTATTGCTATTAATAACAGATCTTCAAATATCAATATAG

mRNA sequence

ATGAAGCTTCTTTTTCTTCAGTCTTACTTCAATGTTCTTGATTATGGAGCCACTGGTAATGACAAAACAGATGACTCGGAAGCTTTTTTGAAAGCTTGGAATGACGCGTGTGCAGCAACAAAAGATAACCCAACGTTATGTATACCATTTGGAAAAACTTACCTGTTGAAACATCTCAAATTCCAAGGCCCTTGCAAGTCCAACCAAGTCAATTTTGACGTAATTTATCTTATCCCAGAGTACTCAGTGATGATTGTATTGCTATTAATAACAGATCTTCAAATATCAATATAG

Coding sequence (CDS)

ATGAAGCTTCTTTTTCTTCAGTCTTACTTCAATGTTCTTGATTATGGAGCCACTGGTAATGACAAAACAGATGACTCGGAAGCTTTTTTGAAAGCTTGGAATGACGCGTGTGCAGCAACAAAAGATAACCCAACGTTATGTATACCATTTGGAAAAACTTACCTGTTGAAACATCTCAAATTCCAAGGCCCTTGCAAGTCCAACCAAGTCAATTTTGACGTAATTTATCTTATCCCAGAGTACTCAGTGATGATTGTATTGCTATTAATAACAGATCTTCAAATATCAATATAG

Protein sequence

MKLLFLQSYFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKSNQVNFDVIYLIPEYSVMIVLLLITDLQISI
Homology
[Close]
BLAST of CmaCh16G002380 vs. Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-11
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 8   SYFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKS 67
           S  +V ++GA G+ KTDD++AF KAW  AC +T    T  +P GKTYLLK  +F+GPCKS
Sbjct: 66  STVSVSNFGAKGDGKTDDTQAFKKAWKKAC-STNGVTTFLVPKGKTYLLKSTRFRGPCKS 125

Query: 68  NQVNFDVI 76
            + NF ++
Sbjct: 126 LR-NFQIL 131

[Close]
BLAST of CmaCh16G002380 vs. Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-10
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 1 

Query: 3  LLFLQSY-----FNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLK 62
          L FLQ +      +V  +GA G+  TDDS+AFLKAW   C+ T D     +P G T++L+
Sbjct: 12 LFFLQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDG-QFVVPAGMTFMLQ 71

Query: 63 HLKFQGPCKSNQV 71
           LKFQG CKS  V
Sbjct: 72 PLKFQGSCKSTPV 83

[Close]
BLAST of CmaCh16G002380 vs. Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-09
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 11  NVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKSN 69
           +V D+GA G D TDD++AF KAW DAC++      L +P  K YLLK + F GPCKS+
Sbjct: 86  SVDDFGARG-DGTDDTKAFEKAWKDACSS---GSVLIVPENKNYLLKQITFSGPCKSD 139

[Close]
BLAST of CmaCh16G002380 vs. Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-09
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 11  NVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKS 68
           +V D+GA G+ KTDD++AF+ AW  AC ++     L +P G TYLLK ++  GPC S
Sbjct: 69  SVSDFGAKGDGKTDDTQAFVNAWKKAC-SSNGAVNLLVPKGNTYLLKSIQLTGPCNS 124

[Close]
BLAST of CmaCh16G002380 vs. Swiss-Prot
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 11  NVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKSN 69
           NVL +GA G+ KT D+ AF +AWN+AC +++      +P  K YLLK + F GPC+S+
Sbjct: 77  NVLSFGAKGDGKTYDNIAFEQAWNEAC-SSRTPVQFVVPKNKNYLLKQITFSGPCRSS 133

[Close]
BLAST of CmaCh16G002380 vs. TrEMBL
Match: A0A0A0KZ95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025750 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.2e-20
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 8  SYFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKS 67
          S FNVLDYGA GN KTDDS+AFLKAWND C AT+++PTL +P GKTYLL  LKFQGPCKS
Sbjct: 25 SDFNVLDYGAIGNGKTDDSKAFLKAWNDVCGATEESPTLHVPDGKTYLLNPLKFQGPCKS 84

Query: 68 NQV 71
           Q+
Sbjct: 85 KQL 87

[Close]
BLAST of CmaCh16G002380 vs. TrEMBL
Match: G7JXT8_MEDTR (Polygalacturonase/glycoside hydrolase family protein OS=Medicago truncatula GN=MTR_5g043350 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.2e-16
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1 

Query: 8  SYFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKS 67
          S FNVL YGA G+  TDDS AF+KAWND C  T+  PTL IP GKT++L+ L FQGPCKS
Sbjct: 27 SNFNVLTYGANGDGNTDDSNAFVKAWNDVCGTTQGTPTLIIPEGKTFMLQPLSFQGPCKS 86

Query: 68 NQVNFDV 75
            +  +V
Sbjct: 87 TTIQVEV 93

[Close]
BLAST of CmaCh16G002380 vs. TrEMBL
Match: A0A067JZL5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19407 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-15
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1 

Query: 8  SYFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKS 67
          S FNVLDYGA G+ KTD+S+A L+AW D C AT+  PTL +P G T+LLK ++FQGPCKS
Sbjct: 20 SSFNVLDYGAIGDGKTDNSQAVLRAWEDLCGATRGTPTLIVPAGGTFLLKPVRFQGPCKS 79

Query: 68 NQVNFDV 75
            ++  +
Sbjct: 80 KNLHIQI 86

[Close]
BLAST of CmaCh16G002380 vs. TrEMBL
Match: A0A067F316_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037736mg PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-15
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1 

Query: 10 FNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKSNQ 69
          FNV+D+GA G+ KTDDS+AF KAW D C+AT D+ TL IP  K +LLK   F+GPCKSN 
Sbjct: 17 FNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNS 76

Query: 70 VNFDV 75
          VN  V
Sbjct: 77 VNIQV 81

[Close]
BLAST of CmaCh16G002380 vs. TrEMBL
Match: Q2MGR5_MEDTR (Glycoside hydrolase, family 28 OS=Medicago truncatula GN=MTR_4g084050 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.0e-15
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1 

Query: 7  QSYFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCK 66
          Q+YFNV+ YGA G+  TDDS AF  AW D C +T+D PTL IP G+ ++L+ L FQGPCK
Sbjct: 20 QNYFNVVKYGAKGDGHTDDSNAFTNAWQDVCGSTRDTPTLIIPEGQNFMLQPLSFQGPCK 79

Query: 67 SNQVNFDVI 76
          S  ++  ++
Sbjct: 80 STTISVKIM 88

[Close]
BLAST of CmaCh16G002380 vs. TAIR10
Match: AT5G27530.1 (AT5G27530.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-15
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 

Query: 10  FNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKSNQ 69
           +NVL +GA G+ +TDDS AFL+AWN  C   ++  TL IP GKTYLL+ ++F+GPCKS  
Sbjct: 53  YNVLKFGAEGDGQTDDSNAFLQAWNATCGGEENINTLFIPSGKTYLLQPIEFKGPCKSTS 112

Query: 70  VNFDV 75
           +   +
Sbjct: 113 IKLQL 117

[Close]
BLAST of CmaCh16G002380 vs. TAIR10
Match: AT4G35670.1 (AT4G35670.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-15
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 10 FNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKSNQ 69
          +NVL++ A G+ +TDDSEAFL+AW  AC    D  TL IP GKT+LL+   FQGPCKS+ 
Sbjct: 24 YNVLNFDAKGDGQTDDSEAFLQAWTAACGGDGDIKTLLIPSGKTFLLQPTVFQGPCKSSS 83

Query: 70 V 71
          +
Sbjct: 84 I 84

[Close]
BLAST of CmaCh16G002380 vs. TAIR10
Match: AT5G44840.1 (AT5G44840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 3.5e-14
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1 

Query: 10 FNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKSN- 69
          ++VL++GA GN  TDDS+AF+KAW+  C +  ++ T  IP  KT+LL+ L FQGPCKS  
Sbjct: 24 YDVLEFGADGNGITDDSKAFVKAWSAMCGSGGNSKTFIIPSNKTFLLQPLTFQGPCKSPS 83

Query: 70 -QVNFD 74
           QV FD
Sbjct: 84 VQVKFD 89

[Close]
BLAST of CmaCh16G002380 vs. TAIR10
Match: AT3G57510.1 (AT3G57510.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-12
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 8   SYFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKS 67
           S  +V ++GA G+ KTDD++AF KAW  AC +T    T  +P GKTYLLK  +F+GPCKS
Sbjct: 66  STVSVSNFGAKGDGKTDDTQAFKKAWKKAC-STNGVTTFLVPKGKTYLLKSTRFRGPCKS 125

Query: 68  NQVNFDVI 76
            + NF ++
Sbjct: 126 LR-NFQIL 131

[Close]
BLAST of CmaCh16G002380 vs. TAIR10
Match: AT5G17200.1 (AT5G17200.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 7.2e-12
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1 

Query: 9   YFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKSN 68
           + +V  +GA G+ KTDD++AFLKAW   C     N  + +P GKT++LK L F GPCKS+
Sbjct: 38  FISVTSFGAIGDGKTDDTKAFLKAWEAVCKG-GHNRKILVPQGKTFMLKPLTFIGPCKSS 97

Query: 69  QVNFDV 75
            ++  +
Sbjct: 98  TISLSI 102

[Close]
BLAST of CmaCh16G002380 vs. NCBI nr
Match: gi|659108957|ref|XP_008454473.1| (PREDICTED: probable polygalacturonase At3g15720 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-22
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 1 

Query: 8  SYFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKS 67
          S FNVLDYGA GN KTDDS+AFLKAWND C AT+D+PTL +P GKTYLL  LKFQGPCKS
Sbjct: 25 SDFNVLDYGAIGNGKTDDSKAFLKAWNDVCGATQDSPTLHVPDGKTYLLSPLKFQGPCKS 84

Query: 68 NQVNFDV 75
          NQV FD+
Sbjct: 85 NQVIFDL 91

[Close]
BLAST of CmaCh16G002380 vs. NCBI nr
Match: gi|778697492|ref|XP_011654334.1| (PREDICTED: probable polygalacturonase At3g15720 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 8.9e-20
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 8  SYFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKS 67
          S FNVLDYGA GN KTDDS+AFLKAWND C AT+++PTL +P GKTYLL  LKFQGPCKS
Sbjct: 25 SDFNVLDYGAIGNGKTDDSKAFLKAWNDVCGATEESPTLHVPDGKTYLLNPLKFQGPCKS 84

Query: 68 NQV 71
           Q+
Sbjct: 85 KQL 87

[Close]
BLAST of CmaCh16G002380 vs. NCBI nr
Match: gi|1000944382|ref|XP_002530440.2| (PREDICTED: probable polygalacturonase At3g15720 [Ricinus communis])

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-17
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 1 

Query: 8   SYFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKS 67
           S FNVLDY A G+ KTDDSE FLKAW D C ATK  PTL +P G+T+LLK + FQGPCKS
Sbjct: 64  STFNVLDYNAVGDGKTDDSEVFLKAWRDVCEATKGMPTLILPSGRTFLLKPIIFQGPCKS 123

Query: 68  NQVNFDV 75
             ++F +
Sbjct: 124 TYLHFQI 130

[Close]
BLAST of CmaCh16G002380 vs. NCBI nr
Match: gi|357487387|ref|XP_003613981.1| (polygalacturonase/glycoside hydrolase family protein [Medicago truncatula])

HSP 1 Score: 92.0 bits (227), Expect = 6.0e-16
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1 

Query: 8  SYFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQGPCKS 67
          S FNVL YGA G+  TDDS AF+KAWND C  T+  PTL IP GKT++L+ L FQGPCKS
Sbjct: 27 SNFNVLTYGANGDGNTDDSNAFVKAWNDVCGTTQGTPTLIIPEGKTFMLQPLSFQGPCKS 86

Query: 68 NQVNFDV 75
            +  +V
Sbjct: 87 TTIQVEV 93

[Close]
BLAST of CmaCh16G002380 vs. NCBI nr
Match: gi|502123188|ref|XP_004498026.1| (PREDICTED: probable polygalacturonase At3g15720 [Cicer arietinum])

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 3  LLFLQSYFNVLDYGATGNDKTDDSEAFLKAWNDACAATKDNPTLCIPFGKTYLLKHLKFQ 62
          LL   +YFNVL+YGA G+ +TDDS AFLKAW D C+  + NPTL IP GK ++L+ + FQ
Sbjct: 28 LLDDSNYFNVLNYGAKGDGQTDDSNAFLKAWQDVCSTRQSNPTLLIPNGKRFMLQPVSFQ 87

Query: 63 GPCKSNQVN 72
          GPC S++VN
Sbjct: 88 GPCISSRVN 96

The following BLAST results are available for this feature:
BLAST of CmaCh16G002380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ADPG1_ARATH2.0e-1150.00Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1[more]
PGLR3_ARATH1.7e-1046.58Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 S... [more]
PGLR_PERAE5.4e-0951.72Polygalacturonase OS=Persea americana PE=2 SV=1[more]
ADPG2_ARATH7.1e-0947.37Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2[more]
PGLR_SOLLC1.2e-0846.55Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1[more]
BLAST of CmaCh16G002380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ95_CUCSA6.2e-2074.60Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025750 PE=3 SV=1[more]
G7JXT8_MEDTR4.2e-1659.70Polygalacturonase/glycoside hydrolase family protein OS=Medicago truncatula GN=M... [more]
A0A067JZL5_JATCU1.6e-1556.72Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19407 PE=3 SV=1[more]
A0A067F316_CITSI2.7e-1561.54Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037736mg PE=3 SV=1[more]
Q2MGR5_MEDTR6.0e-1552.17Glycoside hydrolase, family 28 OS=Medicago truncatula GN=MTR_4g084050 PE=3 SV=1[more]
BLAST of CmaCh16G002380 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27530.13.1e-1550.77 Pectin lyase-like superfamily protein[more]
AT4G35670.19.1e-1555.74 Pectin lyase-like superfamily protein[more]
AT5G44840.13.5e-1453.03 Pectin lyase-like superfamily protein[more]
AT3G57510.11.1e-1250.00 Pectin lyase-like superfamily protein[more]
AT5G17200.17.2e-1243.94 Pectin lyase-like superfamily protein[more]
BLAST of CmaCh16G002380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108957|ref|XP_008454473.1|1.9e-2277.61PREDICTED: probable polygalacturonase At3g15720 [Cucumis melo][more]
gi|778697492|ref|XP_011654334.1|8.9e-2074.60PREDICTED: probable polygalacturonase At3g15720 [Cucumis sativus][more]
gi|1000944382|ref|XP_002530440.2|5.4e-1762.69PREDICTED: probable polygalacturonase At3g15720 [Ricinus communis][more]
gi|357487387|ref|XP_003613981.1|6.0e-1659.70polygalacturonase/glycoside hydrolase family protein [Medicago truncatula][more]
gi|502123188|ref|XP_004498026.1|1.7e-1557.97PREDICTED: probable polygalacturonase At3g15720 [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G002380.1CmaCh16G002380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 7..78
score: 3.49
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 9..72
score: 4.0
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 7..74
score: 2.1
NoneNo IPR availablePANTHERPTHR31375:SF42SUBFAMILY NOT NAMEDcoord: 7..74
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G002380Cucurbita maxima (Rimu)cmacmaB351
CmaCh16G002380Cucumber (Gy14) v1cgycmaB0196
CmaCh16G002380Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G002380Cucurbita moschata (Rifu)cmacmoB338
CmaCh16G002380Wild cucumber (PI 183967)cmacpiB337
CmaCh16G002380Cucumber (Chinese Long) v2cmacuB332
CmaCh16G002380Melon (DHL92) v3.5.1cmameB304
CmaCh16G002380Watermelon (Charleston Gray)cmawcgB302
CmaCh16G002380Watermelon (97103) v1cmawmB313
CmaCh16G002380Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G002380Cucurbita pepo (Zucchini)cmacpeB351
CmaCh16G002380Bottle gourd (USVL1VR-Ls)cmalsiB323
CmaCh16G002380Cucumber (Gy14) v2cgybcmaB493
CmaCh16G002380Melon (DHL92) v3.6.1cmamedB355
CmaCh16G002380Melon (DHL92) v3.6.1cmamedB359
CmaCh16G002380Silver-seed gourdcarcmaB0526
CmaCh16G002380Silver-seed gourdcarcmaB1206
CmaCh16G002380Cucumber (Chinese Long) v3cmacucB0387
CmaCh16G002380Watermelon (97103) v2cmawmbB352
CmaCh16G002380Wax gourdcmawgoB0410
CmaCh16G002380Wax gourdcmawgoB0440