CmaCh16G002160 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G002160
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLTV1, putative
LocationCma_Chr16 : 983551 .. 985972 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTATTCCACGAGCTTATTTTTTCGGTTCCAGCCGGATTGGGAGAAGGATCATCACTGTCAAGGCAGACCAGTCTTCTTCTAGAGCCACGGATGACGACGGTTTCAGCATCCAAGTGTCCCTCACTTGACTGACTTTCTCCCCCGGTAATGCTCAAACATTCATTACACAGTTTTTGTACTACTTTTCTTGATTATAAGCTTAACCAGAATGATAAATATATATATATATATATATATATATATATATATATATAATGTAAAACTTGCATGTCGTTGTATACCTCGACCAACCTATAATTCTACTTGCTCTGTCAGAATTTAGTGCAACTTATTTTGAGTTTGAATTAGTTATGATATTCGTAATCATTTAATATATTGAAGAAGGAAATATATTTTAAATATTTGTAATCAGTTAAATTTGAATAGTAGTATATTTTACTTTATTATCAAGATTTAGTTAGTTTATATTTTGTTCTTGTATCCTTTTTAAAGGTTGTGAAAGGTTGTGAATATCAATGAAGACTACGAACCTTTGATCCCAATTCTATTTCTTACTCTTAGATCTATATTATTTTGTTGATTAATAATATTTTCATATCTATTCACACTTCTAAGTAAGAGATTTTGCGTAGTTGGTATTAGAGCCAAGTTGGTACGGTTTGGTATTATTACTCAACGAGATGAATGGTGCGAGTTTTTCTATGGGTATAACTATGGAAAAGCTCGTTGGCAATAAAGTTATTGGAAGTTATGCATGGAAGTTTATCTACAAGGGCAAGACTTGTGGGATTTAATGGAAGGTAAATGACACATACATTCCAGCAATGCTCTACAGAATGCAACATTGTGTCAACAATGGAAGATCAAATGCGGAAAAACTTTATTTACCTTGCGAAATTTGATTAGCAAAGAGTATATTGATCATGTTCATGATTTAAAGTCACCAAAGCAAGTATGGGATACACTTCAAAAATTGTTTACTAAGAAAAGTACCGCTCGACTGCAATTTATAGAGAATGAACTAGCTATGGTAACTCAAGGTAACTTTTCCGTTGAAGAATATTTTTTGAAAGTGAAAAAACTATGTTCTGAAATTTCAGAATTAGATGTTGAGGAATTAGTGAGTGAGGCTCGATTACAGCGTTATCTTATTCGTGGATTACGGAAAGAGTTTATGCCATTTGTTTCCTCAATATAAGGGTGGGCAAATGAGCCTACAATAATTGAACGAGAGAATCTTCTTTCCAATCAGGAAACCTTGATTAAGCAAATGACTAGCAGCAACGAGTTTTCCCGAAAGTCAGAAGGTGTGTTGTATGTCAAAGATCAAAGGAGATAGAATTTTCATTCAAAGCCTTCATTTAGCAATGAGAATCAATTCAGAAGTGAGGAGTCGTCAAAGAAGCCATTTAAAGCTTGTTATAGGTGTGGAAAACCAGGTCATTTTAAACGAGATTGTCAGGTGAAAGTGGTATGTGATCGTTGTGGAAAGCCAAGCCATATTAAGTCAAATTGCCGAGTCAAAATCGAGGAATTAGAAGCAAATGTTGTACATGAAAGTAAAAAATCTTTGGATCAATTTGGGAATACTGCTTAACCACTGAGGTTCTTGATCAGCCAACAAACGTGACTTCAGCCGTATATCAAGATGATGTCTCTACAGGTGATCAAAATTCTAATTCCACTAACGCTTCTGAATTTGATTATCTCCAAATTTCGCCTCTGGACTCTCTCTTTTTCTCCAATGCCAATTTTGTTGTCCCTGATGACCCTTCTGTTTATTTCACGGCTTTGGATTTGGGATTCGACGGAAATGAAGTCTTCAAGCTAACCTTTGACGATCTTGACGGACTTTACCTCCCCTTTGAGGCTGACGATTTCCTCATTTGGGAGAATTTGATCAAACTACCAATTCACAGGATTCTAATGCTCATCCCCCGCCTGACCTAGAAATAGCGGCTCTGCTTGATGATGATGATTTATCACAATTTGATTTTGATTTTGAGGACTTGAAGGAGGATTTTGTAGTTCAGGAAAATTTATGTGAAGAAGGGGAGGATGATTCAACGGATAATAAGTTTTAGTGTGGCTAAGGATTTTGAGAAGGCGACAGGAAGCCAGAATATTGTTAATAACAAATCTTTTGGCGACGACATTTTTTAGGATGCAGACGTTGACCATGTGGAAGATGATGTTGATAAGCCACAAACTCGGCGGCTTTTGGATGATCAATTTGACACCCTCTTAAGTCAGGACTATGCATCTAGTGACGATGGTGACAGTGCTTGTGATGAGCATGATGGTTGGGTAGCTGAAGAAGATGAGTCCCTTGCTCAGAAGCTCAAGCATGCCCTTGGGGATCATAGTAAGGATGACTTGGACCTTGACCAAGGATATAAAGCTCCTGCGCAGATATAA

mRNA sequence

ATGCGTATTCCACGAGCTTATTTTTTCGGTTCCAGCCGGATTGGGAGAAGGATCATCACTGTCAAGGCAGACCAGTCTTCTTCTAGAGCCACGGATGACGACGGTTTCAGCATCCAAGATGCAGACGTTGACCATGTGGAAGATGATGTTGATAAGCCACAAACTCGGCGGCTTTTGGATGATCAATTTGACACCCTCTTAAGTCAGGACTATGCATCTAGTGACGATGGTGACAGTGCTTGTGATGAGCATGATGGTTGGGTAGCTGAAGAAGATGAGTCCCTTGCTCAGAAGCTCAAGCATGCCCTTGGGGATCATAGTAAGGATGACTTGGACCTTGACCAAGGATATAAAGCTCCTGCGCAGATATAA

Coding sequence (CDS)

ATGCGTATTCCACGAGCTTATTTTTTCGGTTCCAGCCGGATTGGGAGAAGGATCATCACTGTCAAGGCAGACCAGTCTTCTTCTAGAGCCACGGATGACGACGGTTTCAGCATCCAAGATGCAGACGTTGACCATGTGGAAGATGATGTTGATAAGCCACAAACTCGGCGGCTTTTGGATGATCAATTTGACACCCTCTTAAGTCAGGACTATGCATCTAGTGACGATGGTGACAGTGCTTGTGATGAGCATGATGGTTGGGTAGCTGAAGAAGATGAGTCCCTTGCTCAGAAGCTCAAGCATGCCCTTGGGGATCATAGTAAGGATGACTTGGACCTTGACCAAGGATATAAAGCTCCTGCGCAGATATAA

Protein sequence

MRIPRAYFFGSSRIGRRIITVKADQSSSRATDDDGFSIQDADVDHVEDDVDKPQTRRLLDDQFDTLLSQDYASSDDGDSACDEHDGWVAEEDESLAQKLKHALGDHSKDDLDLDQGYKAPAQI
Homology
[Close]
BLAST of CmaCh16G002160 vs. TrEMBL
Match: A0A0A0L517_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006680 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.6e-23
Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 1 

Query: 39  QDADVDHVED-----DVDKPQTRRLLDDQFDTLLSQDYASSDDGDSACDEHDGWVAEEDE 98
           +DAD++H+E+     DVDKP+TRRLLDDQFDTLL++DYASSD   + CDE    +AEE+E
Sbjct: 262 EDADMEHLEEAVDGSDVDKPRTRRLLDDQFDTLLNRDYASSDSDGTDCDEP--CIAEEEE 321

Query: 99  SLAQKLKHALGDHSKDDLDLDQGYKAPAQI 124
           SLAQKL HALG+HSKDDL+L+QGYKAPA I
Sbjct: 322 SLAQKLNHALGNHSKDDLELEQGYKAPADI 349

[Close]
BLAST of CmaCh16G002160 vs. TrEMBL
Match: M5XC33_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004085mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.4e-14
Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 1 

Query: 24  DQSSSRATDDDGFSIQDADVDHVEDD--VDKPQTRRLLDDQFDTLLSQDYASSDDGDSAC 83
           +QS ++   ++   +   +V+  +D+   DKP+  RLLD+QFD L+SQ+YAS DD D   
Sbjct: 242 EQSENKNVRNETNGVGTNNVEGAKDNSVADKPRVHRLLDEQFDLLVSQEYASDDDND--- 301

Query: 84  DEHDGWVAEEDESLAQKLKHA-LGDHSKDDLDLDQGYKAPAQI 124
           D++ G+VAEEDE+LA+KLKHA L  H++DDL+LD GYKAPA +
Sbjct: 302 DDY-GYVAEEDETLAEKLKHATLNGHARDDLELDGGYKAPADL 340

[Close]
BLAST of CmaCh16G002160 vs. TrEMBL
Match: B9H4I8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25610g PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-11
Identity = 52/141 (36.88%), Postives = 73/141 (51.77%), Query Frame = 1 

Query: 7   YFFGSSRIGRRIITVKADQSSSRATDDDGFSIQDADVDHVEDDV---------------- 66
           Y   S  +G R+     D   +   DD   S   +DV+ +E+D                 
Sbjct: 176 YHVASKSVGVRVQKA-VDPEVAALLDDSDLSRFGSDVEDLEEDFVVLDRSGVEKAINAPV 235

Query: 67  --------DKPQTRRLLDDQFDTLLSQDYASSDDGDSACDEHDGWVAEEDESLAQKLKHA 124
                   +K + RR LD+QFD L SQ+Y +  +GD    E+DG++AEEDE LA KLKHA
Sbjct: 236 EVRGDFGDEKQRVRRPLDEQFDLLESQEYGTDGEGD----EYDGYIAEEDEFLAGKLKHA 295

[Close]
BLAST of CmaCh16G002160 vs. TrEMBL
Match: I1MT49_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G076700 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-11
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1 

Query: 26  SSSRATDDDGFSIQDADVDHVEDDV-DKPQTRRLLDDQFDTLLSQDYASSDDGDSACDEH 85
           S SR TDD G      D    ED V +KP  RRLLD+QFD L  Q+Y + DD D   D +
Sbjct: 237 SCSRVTDDSGPLDGVTDGVPGEDCVGEKPGARRLLDEQFDLLEHQEYGTDDDDDGG-DYY 296

Query: 86  DGWVAEEDESLAQKLKHALGDHSKDDLDLDQGYKAPAQI 124
           + + A+EDESLA+KLKH+L +H  DDL+LD  YK P+ +
Sbjct: 297 ENYQADEDESLAEKLKHSLKNHVMDDLELDGKYKVPSDL 334

[Close]
BLAST of CmaCh16G002160 vs. TrEMBL
Match: A0A0B2QE90_GLYSO (Protein LTV1 like OS=Glycine soja GN=glysoja_006752 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-11
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1 

Query: 26  SSSRATDDDGFSIQDADVDHVEDDV-DKPQTRRLLDDQFDTLLSQDYASSDDGDSACDEH 85
           S SR TDD G      D    ED V +KP  RRLLD+QFD L  Q+Y + DD D   D +
Sbjct: 237 SCSRVTDDSGPLDGVTDGVPGEDCVGEKPGARRLLDEQFDLLEHQEYGTDDDDDGG-DYY 296

Query: 86  DGWVAEEDESLAQKLKHALGDHSKDDLDLDQGYKAPAQI 124
           + + A+EDESLA+KLKH+L +H  DDL+LD  YK P+ +
Sbjct: 297 ENYQADEDESLAEKLKHSLKNHVMDDLELDGKYKVPSDL 334

[Close]
BLAST of CmaCh16G002160 vs. NCBI nr
Match: gi|659095505|ref|XP_008448616.1| (PREDICTED: protein LTV1 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 63/90 (70.00%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 39  QDADVDHVED-----DVDKPQTRRLLDDQFDTLLSQDYASSDDGDSACDEHDGWVAEEDE 98
           +DAD++H+E+     DVDKP+TRRLLDDQFDTLLS+DYASS+  D+ CDE    +AEEDE
Sbjct: 262 EDADMEHLEEAGDGSDVDKPRTRRLLDDQFDTLLSRDYASSNCDDTDCDEP--CIAEEDE 321

Query: 99  SLAQKLKHALGDHSKDDLDLDQGYKAPAQI 124
           SLAQKL HALG+HSKDDL+L+QGYKAPA I
Sbjct: 322 SLAQKLNHALGNHSKDDLELEQGYKAPADI 349

[Close]
BLAST of CmaCh16G002160 vs. NCBI nr
Match: gi|449456741|ref|XP_004146107.1| (PREDICTED: protein LTV1 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 1 

Query: 39  QDADVDHVED-----DVDKPQTRRLLDDQFDTLLSQDYASSDDGDSACDEHDGWVAEEDE 98
           +DAD++H+E+     DVDKP+TRRLLDDQFDTLL++DYASSD   + CDE    +AEE+E
Sbjct: 262 EDADMEHLEEAVDGSDVDKPRTRRLLDDQFDTLLNRDYASSDSDGTDCDEP--CIAEEEE 321

Query: 99  SLAQKLKHALGDHSKDDLDLDQGYKAPAQI 124
           SLAQKL HALG+HSKDDL+L+QGYKAPA I
Sbjct: 322 SLAQKLNHALGNHSKDDLELEQGYKAPADI 349

[Close]
BLAST of CmaCh16G002160 vs. NCBI nr
Match: gi|596141723|ref|XP_007222483.1| (hypothetical protein PRUPE_ppa004085mg [Prunus persica])

HSP 1 Score: 85.1 bits (209), Expect = 9.2e-14
Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 1 

Query: 24  DQSSSRATDDDGFSIQDADVDHVEDD--VDKPQTRRLLDDQFDTLLSQDYASSDDGDSAC 83
           +QS ++   ++   +   +V+  +D+   DKP+  RLLD+QFD L+SQ+YAS DD D   
Sbjct: 242 EQSENKNVRNETNGVGTNNVEGAKDNSVADKPRVHRLLDEQFDLLVSQEYASDDDND--- 301

Query: 84  DEHDGWVAEEDESLAQKLKHA-LGDHSKDDLDLDQGYKAPAQI 124
           D++ G+VAEEDE+LA+KLKHA L  H++DDL+LD GYKAPA +
Sbjct: 302 DDY-GYVAEEDETLAEKLKHATLNGHARDDLELDGGYKAPADL 340

[Close]
BLAST of CmaCh16G002160 vs. NCBI nr
Match: gi|645229131|ref|XP_008221321.1| (PREDICTED: LOW QUALITY PROTEIN: protein LTV1 homolog [Prunus mume])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 49/103 (47.57%), Postives = 73/103 (70.87%), Query Frame = 1 

Query: 24  DQSSSRATDDDGFSIQDADVDHVEDD--VDKPQTRRLLDDQFDTLLSQDYASSDDGDSAC 83
           +QS ++   ++   +    V+  +D+   +KP+  RLLD+QFD L+SQ+YAS D+ D   
Sbjct: 244 EQSENKNVRNETNGVGTNSVEGAKDNSVAEKPRVHRLLDEQFDLLVSQEYASDDEND--- 303

Query: 84  DEHDGWVAEEDESLAQKLKHA-LGDHSKDDLDLDQGYKAPAQI 124
           D++ G+VAEEDE+LA+KLKHA L  H++DDL+LD GYKAPA +
Sbjct: 304 DDY-GYVAEEDETLAEKLKHATLNGHARDDLELDGGYKAPADL 342

[Close]
BLAST of CmaCh16G002160 vs. NCBI nr
Match: gi|743903601|ref|XP_011045151.1| (PREDICTED: protein LTV1 homolog [Populus euphratica])

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 1 

Query: 51  DKPQTRRLLDDQFDTLLSQDYASSDDGDSACDEHDGWVAEEDESLAQKLKHALGDHSKDD 110
           +K + RR LD+QFD L SQ+Y + D+GD    E+DG++AEEDE LA KLKHAL DH+ DD
Sbjct: 281 EKQRVRRPLDEQFDLLESQEYGTDDEGD----EYDGYIAEEDEFLAGKLKHALNDHAVDD 340

Query: 111 LDLDQGYKAPAQI 124
           L+LD  Y+ PA +
Sbjct: 341 LELDDKYEVPADL 349

The following BLAST results are available for this feature:
BLAST of CmaCh16G002160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh16G002160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L517_CUCSA7.6e-2367.78Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006680 PE=4 SV=1[more]
M5XC33_PRUPE6.4e-1449.51Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004085mg PE=4 SV=1[more]
B9H4I8_POPTR2.3e-1136.88Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25610g PE=4 SV=1[more]
I1MT49_SOYBN2.3e-1149.49Uncharacterized protein OS=Glycine max GN=GLYMA_17G076700 PE=4 SV=1[more]
A0A0B2QE90_GLYSO2.3e-1149.49Protein LTV1 like OS=Glycine soja GN=glysoja_006752 PE=4 SV=1[more]
BLAST of CmaCh16G002160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh16G002160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095505|ref|XP_008448616.1|2.2e-2370.00PREDICTED: protein LTV1 homolog isoform X1 [Cucumis melo][more]
gi|449456741|ref|XP_004146107.1|1.1e-2267.78PREDICTED: protein LTV1 homolog isoform X2 [Cucumis sativus][more]
gi|596141723|ref|XP_007222483.1|9.2e-1449.51hypothetical protein PRUPE_ppa004085mg [Prunus persica][more]
gi|645229131|ref|XP_008221321.1|1.0e-1247.57PREDICTED: LOW QUALITY PROTEIN: protein LTV1 homolog [Prunus mume][more]
gi|743903601|ref|XP_011045151.1|1.7e-1256.16PREDICTED: protein LTV1 homolog [Populus euphratica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G002160.1CmaCh16G002160.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G002160Melon (DHL92) v3.6.1cmamedB355
CmaCh16G002160Silver-seed gourdcarcmaB0526
CmaCh16G002160Silver-seed gourdcarcmaB0995
CmaCh16G002160Silver-seed gourdcarcmaB1206
CmaCh16G002160Cucumber (Chinese Long) v3cmacucB0387
CmaCh16G002160Cucumber (Chinese Long) v3cmacucB0405
CmaCh16G002160Watermelon (97103) v2cmawmbB329
CmaCh16G002160Watermelon (97103) v2cmawmbB352
CmaCh16G002160Wax gourdcmawgoB0440
CmaCh16G002160Cucurbita maxima (Rimu)cmacmaB351
CmaCh16G002160Cucumber (Gy14) v1cgycmaB0196
CmaCh16G002160Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G002160Cucurbita moschata (Rifu)cmacmoB338
CmaCh16G002160Wild cucumber (PI 183967)cmacpiB337
CmaCh16G002160Cucumber (Chinese Long) v2cmacuB332
CmaCh16G002160Melon (DHL92) v3.5.1cmameB304
CmaCh16G002160Watermelon (Charleston Gray)cmawcgB302
CmaCh16G002160Watermelon (97103) v1cmawmB313
CmaCh16G002160Cucurbita pepo (Zucchini)cmacpeB342
CmaCh16G002160Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G002160Cucurbita pepo (Zucchini)cmacpeB351
CmaCh16G002160Bottle gourd (USVL1VR-Ls)cmalsiB301
CmaCh16G002160Bottle gourd (USVL1VR-Ls)cmalsiB323
CmaCh16G002160Cucumber (Gy14) v2cgybcmaB493