CmaCh16G002070 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G002070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Sugar transporter, putative
Location	Cma_Chr16 : 943329 .. 944674 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCAACTAGGCGGTCATGGTGGGCTGAGCAAAGGGCATGCGTATTTGGTTCTTGTTTTAATATGCATATATGCTGCTGGTTTTGCTTGGAATTGGGGTTCTCTTGGTTGGTTGGTTGGTTCCGTCTGAGATCTTTGAATGGGAGATTGAATCTGCTGGACAGAGTATTATTGTGGCTGCAAGTTCTATCTTTTCTTTTGTTTCTTTCTTATTTGGTTGGTGGGTTTTGATTATGTCTTGTCTTTGGGTTGCTGGAATGACACCGTGTGACATCTTAAGTTAATTGGAGAGGGGGACAAAACATTGGATGAGGGTGTGGAAATCTCTTCTTAGTAGAGTTTTAAAACAGTGAGGCTGACAACTATATCAATTAAAGCGGATAATATCTGTTAGCGTTAGGCTTGGATGGTTACAAATGGTATTAGAGCTAGACACCGGGCCGTGTGTCATCAAGGACGCTGGCCCCTAAGAGGAATAGATTGTGAGATCTCACATTGGTTGGAGAGAAGAACGATAGATTTCTTATAGGAGTTTTAAAACCTCTCTCTAGCAGATGTGGCCAGCGAGGACGCTAACCTCAAAGAGGGTAGATTATGAGATCCCACGTCGGTTAGAGAGAAGAGAGGGGAATGGAGCATTTCTTGTAAGAACATAGAGGCGCATTTCTTGTAAGAACGTAGAAACCTCTCTCCAGCAGCAAACGTGTTTTAAAGTGTGAGACTGACAGTCATGTATAACGGAATAAAGTGGACAATATCGATTAGCGGTGGGCTTGTGCGGAGTGGTTACAATTTGTGTTAGCTTTTCTTATACCTATACGTCTGCCTTTGGGTTTTGATTATCAATGCCTTAATGTTAGAACAAGGTTGCATGGCCTCATAATATCACCCTAAGTTTGACTTGCTTCGTCATGGGGGCAATAGAACTGTATAAAACACCAACATCCATAAATTTGACTAGGAACGAGCTAGACAATAAGTAGATGCCTCAGCTCCTCCTGAATGATTTGACATGGGAGTTCCTGGTTTGGTTTCTTGCTCAACTTTTTATGAACCCCAGATTTGAGTTTTCACTGTTTTTAACTAAAATTCTGAGGTAAACAAGAATATCAAATCAGCAAACGCAGATATACATAATGAACAAGGAGGCTAGCATACTATCATGATCACTTCTTGTTTGTGCCTTTAGCATCTCGCCATCGTCATTGGCCCACGGTATCACATGCCTACTAGCTTTTGCTTGGATCTAATTCATTTGGAGTTCAATAAGAGGAACAAAGCAAGTTCAAACTCCATAAACAAAGACAGCCCAGGGAACAAAATTGCCCAAAGGACGTATAG

mRNA sequence

ATGGCTGCTCAACTAGGCGGTCATGGTGGGCTGAGCAAAGGGCATGCGTATTTGGTTCTTGTTTTAATATGCATATATGCTGCTGGTTTTGCTTGGAATTGGGGTTCTCTTGAGGAACAAAGCAAGTTCAAACTCCATAAACAAAGACAGCCCAGGGAACAAAATTGCCCAAAGGACGTATAG

Coding sequence (CDS)

ATGGCTGCTCAACTAGGCGGTCATGGTGGGCTGAGCAAAGGGCATGCGTATTTGGTTCTTGTTTTAATATGCATATATGCTGCTGGTTTTGCTTGGAATTGGGGTTCTCTTGAGGAACAAAGCAAGTTCAAACTCCATAAACAAAGACAGCCCAGGGAACAAAATTGCCCAAAGGACGTATAG

Protein sequence

MAAQLGGHGGLSKGHAYLVLVLICIYAAGFAWNWGSLEEQSKFKLHKQRQPREQNCPKDV

Homology

[Close]

BLAST of CmaCh16G002070 vs. Swiss-Prot
Match: HEX6_RICCO (Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-10
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 1   MAAQLGGHGGLSKGHAYLVLVLICIYAAGFAWNWGSL 38
           MAA+LG HGG+ KG+AY+VL+LICIY AGF W+WG L
Sbjct: 369 MAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPL 405

[Close]

BLAST of CmaCh16G002070 vs. TrEMBL
Match: A0A0A0KU42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022910 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.0e-10
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1   MAAQLGGHGGLSKGHAYLVLVLICIYAAGFAWNWGSL 38
           MAA+LG HGGLSKG+AYLVLVLICIY AGFAW+WG L
Sbjct: 372 MAAKLGDHGGLSKGYAYLVLVLICIYVAGFAWSWGPL 408

[Close]

BLAST of CmaCh16G002070 vs. TrEMBL
Match: M5XNX1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004465mg PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-09
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1   MAAQLGGHGGLSKGHAYLVLVLICIYAAGFAWNWGSL 38
           MAAQLG HGG+SKG+AYLVLVLICIY AGF W+WG L
Sbjct: 369 MAAQLGDHGGVSKGYAYLVLVLICIYVAGFGWSWGPL 405

[Close]

BLAST of CmaCh16G002070 vs. TrEMBL
Match: A0A0K9RE98_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_076550 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.2e-09
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 1   MAAQLGGHGGLSKGHAYLVLVLICIYAAGFAWNWGSL 38
           MA QLG HGG+SKG+AYLVLVLIC+Y AGF W+WG L
Sbjct: 351 MATQLGDHGGISKGYAYLVLVLICVYVAGFGWSWGPL 387

[Close]

BLAST of CmaCh16G002070 vs. TrEMBL
Match: A0A061G705_THECC (Major facilitator superfamily protein OS=Theobroma cacao GN=TCM_014877 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-09
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 1   MAAQLGGHGGLSKGHAYLVLVLICIYAAGFAWNWGSL 38
           MAA LG HGGLSKG+AYLVL LIC+Y AGFAW+WG L
Sbjct: 369 MAALLGDHGGLSKGYAYLVLALICVYVAGFAWSWGPL 405

[Close]

BLAST of CmaCh16G002070 vs. TrEMBL
Match: B9R9W6_RICCO (Sugar transporter, putative OS=Ricinus communis GN=RCOM_1501000 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-08
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 1   MAAQLGGHGGLSKGHAYLVLVLICIYAAGFAWNWGSL 38
           MAA+LG HGG+ KG+AY+VL+LICIY AGF W+WG L
Sbjct: 369 MAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPL 405

[Close]

BLAST of CmaCh16G002070 vs. TAIR10
Match: AT1G34580.1 (AT1G34580.1 Major facilitator superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 2.2e-06
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 1


Query: 7   GHGGLSKGHAYLVLVLICIYAAGFAWNWGSL 38
           G G + KG+A  V+VL+CIYAAGF W+WG L
Sbjct: 380 GDGEMKKGYAVTVVVLLCIYAAGFGWSWGPL 410

[Close]

BLAST of CmaCh16G002070 vs. NCBI nr
Match: gi|449458417|ref|XP_004146944.1| (PREDICTED: hexose carrier protein HEX6-like isoform X1 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1   MAAQLGGHGGLSKGHAYLVLVLICIYAAGFAWNWGSL 38
           MAA+LG HGGLSKG+AYLVLVLICIY AGFAW+WG L
Sbjct: 372 MAAKLGDHGGLSKGYAYLVLVLICIYVAGFAWSWGPL 408

[Close]

BLAST of CmaCh16G002070 vs. NCBI nr
Match: gi|778690183|ref|XP_011653074.1| (PREDICTED: hexose carrier protein HEX6-like isoform X2 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1   MAAQLGGHGGLSKGHAYLVLVLICIYAAGFAWNWGSL 38
           MAA+LG HGGLSKG+AYLVLVLICIY AGFAW+WG L
Sbjct: 322 MAAKLGDHGGLSKGYAYLVLVLICIYVAGFAWSWGPL 358

[Close]

BLAST of CmaCh16G002070 vs. NCBI nr
Match: gi|645257473|ref|XP_008234428.1| (PREDICTED: hexose carrier protein HEX6-like [Prunus mume])

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-09
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1   MAAQLGGHGGLSKGHAYLVLVLICIYAAGFAWNWGSL 38
           MAAQLG HGG+SKG+AYLVLVLICIY AGF W+WG L
Sbjct: 369 MAAQLGDHGGVSKGYAYLVLVLICIYVAGFGWSWGPL 405

[Close]

BLAST of CmaCh16G002070 vs. NCBI nr
Match: gi|694394995|ref|XP_009372848.1| (PREDICTED: hexose carrier protein HEX6-like [Pyrus x bretschneideri])

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-09
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1   MAAQLGGHGGLSKGHAYLVLVLICIYAAGFAWNWGSL 38
           MAAQLG HGG+SKG+AYLVLVLICIY AGF W+WG L
Sbjct: 369 MAAQLGDHGGVSKGYAYLVLVLICIYVAGFGWSWGPL 405

[Close]

BLAST of CmaCh16G002070 vs. NCBI nr
Match: gi|596033719|ref|XP_007219546.1| (hypothetical protein PRUPE_ppa004465mg [Prunus persica])

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-09
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1   MAAQLGGHGGLSKGHAYLVLVLICIYAAGFAWNWGSL 38
           MAAQLG HGG+SKG+AYLVLVLICIY AGF W+WG L
Sbjct: 369 MAAQLGDHGGVSKGYAYLVLVLICIYVAGFGWSWGPL 405

The following BLAST results are available for this feature:

BLAST of CmaCh16G002070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HEX6_RICCO	1.8e-10	70.27	Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1	[more]

BLAST of CmaCh16G002070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU42_CUCSA	8.0e-10	83.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022910 PE=3 SV=1	[more]
M5XNX1_PRUPE	1.8e-09	81.08	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004465mg PE=3 SV=1	[more]
A0A0K9RE98_SPIOL	5.2e-09	75.68	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_076550 PE=3 SV=1	[more]
A0A061G705_THECC	6.8e-09	78.38	Major facilitator superfamily protein OS=Theobroma cacao GN=TCM_014877 PE=3 SV=1	[more]
B9R9W6_RICCO	2.0e-08	70.27	Sugar transporter, putative OS=Ricinus communis GN=RCOM_1501000 PE=3 SV=1	[more]

BLAST of CmaCh16G002070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34580.1	2.2e-06	61.29	Major facilitator superfamily protein	[more]

BLAST of CmaCh16G002070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458417\|ref\|XP_004146944.1\|	1.1e-09	83.78	PREDICTED: hexose carrier protein HEX6-like isoform X1 [Cucumis sativus]	[more]
gi\|778690183\|ref\|XP_011653074.1\|	1.1e-09	83.78	PREDICTED: hexose carrier protein HEX6-like isoform X2 [Cucumis sativus]	[more]
gi\|645257473\|ref\|XP_008234428.1\|	2.6e-09	81.08	PREDICTED: hexose carrier protein HEX6-like [Prunus mume]	[more]
gi\|694394995\|ref\|XP_009372848.1\|	2.6e-09	81.08	PREDICTED: hexose carrier protein HEX6-like [Pyrus x bretschneideri]	[more]
gi\|596033719\|ref\|XP_007219546.1\|	2.6e-09	81.08	hypothetical protein PRUPE_ppa004465mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity
molecular_function	GO:0022891	substrate-specific transmembrane transporter activity
molecular_function	GO:0015293	symporter activity
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G002070.1	CmaCh16G002070.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G002070	CmoCh04G003710	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G002070	Lsi07G001060	Bottle gourd (USVL1VR-Ls)	cmalsiB323
CmaCh16G002070	MELO3C017656.2	Melon (DHL92) v3.6.1	cmamedB355
CmaCh16G002070	CsaV3_4G004100	Cucumber (Chinese Long) v3	cmacucB0387
CmaCh16G002070	Cla97C07G143890	Watermelon (97103) v2	cmawmbB352
CmaCh16G002070	Bhi01G002033	Wax gourd	cmawgoB0434
CmaCh16G002070	CsGy4G003960	Cucumber (Gy14) v2	cgybcmaB493

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G002070	CmaCh04G003520	Cucurbita maxima (Rimu)	cmacmaB351

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G002070	Wax gourd	cmawgoB0440
CmaCh16G002070	Cucumber (Gy14) v1	cgycmaB0196
CmaCh16G002070	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G002070	Wild cucumber (PI 183967)	cmacpiB337
CmaCh16G002070	Cucumber (Chinese Long) v2	cmacuB332
CmaCh16G002070	Melon (DHL92) v3.5.1	cmameB304
CmaCh16G002070	Watermelon (Charleston Gray)	cmawcgB302
CmaCh16G002070	Watermelon (97103) v1	cmawmB313
CmaCh16G002070	Cucurbita pepo (Zucchini)	cmacpeB342
CmaCh16G002070	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G002070	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G002070	Silver-seed gourd	carcmaB0526
CmaCh16G002070	Silver-seed gourd	carcmaB1206