CmaCh16G001710 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCATGACCTTTATAAAGACCGACACATCATCAATTTCCCATCTTCTGTTTTCGTGTGCGACGTTTTAGAGAAAAATGGAGAGGTCCTCGTCGCCTCCTCTGTTGTTGCTACTGCTGCTCTCTTCCCTCGCCGTCGTCTGCTCCGCTGTCGAGCCGCCTCAGATCACCGTGAAGCCCGACATTGCTCCCCAGTCCCTCCCGATCAACTACATCCAGGTCCGTGTTTCAACCCTCTTTACTCTCAACCGTCGCTTTTGTATTTTTCCTTTAACTTTTGCGTAATATACTTCTCTTTTTCTTTCGTGTTGCGAAGGAAGTTGGAAGCTGTTCTTACGAGGTTACAGTAGCAACAAGCTGTTCATCTCCTTCATTTATCACTGACGAAATCGGTGTGTTGTTTGGAGATTCTCATGGAAATCAGGTGTTCTTTCTTTTCTGTCATTTTCCTTTTTAAAATTATTAACTCTAGGGTTTTTACTTTTATTTACCTATTTCTGAAATTAATTTCCCTGATTCCGAACAGGAGTATGGATTTTGTTTCTAATCTTACGCCAGGATGATTCTGGCCTGAATAATAGACTTTATTATTATTATGTTTTTGTTAATCAAGCACTTAATATATGATCTGATCCACGGATTTCTGTTTTGTTTTGATTGAATGTTTCACATGTGTAACAAATAGATTGTGGAGAAGAAGTTGAGCAATGGAGACAAGGTGTTTGATAGTTGTAATACAGATAGGTTTGTTCTAAATGATCGACCCTGCAGTGTCCAAATTAGTTACATGTATATCTATAAAGACGGAGCTGACGATTGGCTTCCGAACTCTGTTGAAATCTCTGGCTCTGGAATCAAACCCCTTCTGTTCATCTTAAAATCCTCCATCCCAAGAAACAATTGGTTTGGCTTTGATTTACGACAATATCCTTTTCCATCGCCACCGTCCTACAACCCGTCCCCTCCTTTTCCATCGTTGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCACCATCCTCTGCCACCGCCGCCGGAGCCAATTCTTCCTCCTCCGCCTCCACCTAAGCCTGTTCTTCCCCCACCGCCTCCTCCACCATCATCCTCCAGCAAAATCTCTGGTCTGAAATTGGCTAAGGTATCTGTGGTTTTGGGATTGCTGTTTGCCCTTCTGTGATTCTGCAGTAGCTGCTTGCTTTATGTAGTAGTTTAGTAGGTAAATTTTGTAGTGGTGGGTGGGTGATGTTAATGTTCAAGTTTCATCCCCCATTCCACCATCTTGTCGTACCGTAAGCTTTCAAAGCTTTAGTTAAACTTTATCTTTTCAGCTGTATGGCTATAAGCCTGGTGCAATTCTACAGCCACTGCTTGTTCTAAGTGGGTGGTGGGCGATACTATACTTACGTTTCATCCCCTTTTCCACCCATGTTTTAAGGTCTAGACAAGCAAGCTTTACTGAACCTCTTTATGTTATCGTCTTTTCAGTTGTATGAGATATATGCCTTCTCTATGAAAGTCGGCCCAGCCTTCTATGTCGAAGGTTGTATGGTGTTTTATTTTTCAACAATGTGGGATGGAGTGGATGTGTTGAATTTTGATTTTGAGTATTTTTTGTATTTATTTCAACCATAATTATTATAAATAAAATAACATTAGTTAAAACCTTATTAATTTTGAGAATTATACCAAAAGTACTTAATAATCTGACATTTGAACTTTGTATTTAATATCAAAATGGCTATTATACCATCTTAATTCGATTATTTGTCCAGATATTTCTAAAATTACACAAAGGTTTTTCCCTCTGAAATTAATAAATTGATTCATTTTTAAAAAATCACATGAAAATTTTATTTACATTTTAATTTCTTTTTTTATTTTCTCAAAGCCAACATGAATAAAAGCACCCTCTAGAGGAGGAGGATAGAAATATCTAGTGATAGTTTCGTATTTTTTCAATAGGTCACTTTCGGAGTTACAATCAAACACATGAAGTCTAACAAGTAAATCAATCCGGTCTCCATTAATATATCTCATCTCAAGTTCATTTCATTTCTGTTAATAAAAAATATAAAAAATAATATTGAAACTAAATATTCTTTAAAATTTTAGTTTTAAAATAGATTGATGTTAATTTAAAAAGGTGTAATTTTTGTTGGCATTAGTAAGAAAAGGAAAATAGTTTGTTGGTTACAAAAGATTGAGGATTACTTGCATTTTGAGTTTGGTATAAATATTTTATTTATTTATTTGCTTTTTTTTTTTTTCCCGACTTCCCGGCAGTGAAAACCTACTACTCCATCACCGATTGACGACCATATATTTGATTGGAGCCAAGACTCTGGTTCTGCACCTCTTCAACCAAGCTTCTTGTACTCTCGTTTCAGTGGAGCAAAACGAAGGTCTGTAAAAATGGTGATGCCTCCTCTTTCTTTCTTCATCTTTTTCTTCTTCTCCATTTCTGCCGCCGTATCATCCGGTTCTCTGCCTCAACCTGCTCCAAAATCCTTAACCATCGGCTATATTCAGGTTCCGTCTATCATTTTACCTGTACTTTCGTTACTCAATCGATGTGCTTATCTGAGGTTCTCTGTGAATCAAACTGACTCTGTTATCTTCTTCTTTGGTACTTTCGGCTGAAGAAAGCGGGAGATTGCAACTACAGGGTCAATATAACAACAAGCTGCTCATCCCCTTTCCATATTACTGCTGAAATCGGTGTTCTGTTTGGGGATGCGCATGGAAATCAGGTTCGTTCTTCGGGCATTTTAATTTAAATTATTTTGCAATTAGTTCATCTGCTGAATATTGTTAGACTCAGAGAAGAAAATTGAAAGCATATTGGTTAACATTTAAGCATCCAAGGCCAAACAGAAGTCTATTCCTGATTTTTCATTGAATATGGCTGTTTTCCTGCTGTGCTCTATATTATAGTCAAATTTTTTATATTGGAGTTTTGAATTGCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAACAAATAAACTAGAATTAGAAGCTTACAATCTGTGATTCTATTGAAAGGATACATAGTTGGTTCACTTAAACTGGAATTAGAAGCTTATAATCAGTTTTCAAATATGTTTATCATTACAGATTTGAAACCAAAAACAAGAAATTGTTGGTAGAATAACAGGTAGTAGCACTGTTAGTTTCTTAACTTTCAAATGCTTTATTAGTTCCTCATCTTTAAAAGTTTGTGTTAGTCTCTACAGTTTACATACATTCATAAGCTTGATATATAATCAGTTACACAGTGACTTTAAACACTTGGAAATGTGATATTCAATTGAGAGATGAACAAAGCATGTGGGTATGGTAAGACTTCATTAAATAATGTTTAAAAGGATGAGGATGGCTGATTTAGAAGTTGGAAAGCAGATATATGAGCCAAAGCTGGAAGTTGAAAGCAGCAAAGCACTTGCAAAATGCAGCAAAGACATTTTTGAACTGACAGGGCCATGCACAGACCAGATATGTTTCTTTTACCTTTACAAGAAGGGGTCCGACGATTGGATTCCAGAGACTGTAGAAATCTCCAGCCCTGATATTGACACTGTTAAATACAAATACAACTCCTCAATCCCAGAGGACACATGGTATGGCTTTGACGACTGCCAATACTTCACATCGCCACCGCCACCGCCACCATCTCCGCCAGCCCCCTCCACAGCCGGCCATCAGCGGAGGTTGAAGTGGCTTGCTTATGTGATCCCTGTGCTTCTTAGCAGCGCTGTGCTATGAGTGTGATTCTGCATCTTGGCCATGGGCGTGGTTGTATTTTTGATCCACCGCTGTGCCTGTATTTGCTTTGTGTTTTTTGAATCTCTTGATGATCACATCAAGGTCAAAGGAATGTAGTTCATCTTTGATATGCAGAATGGGATTTGATGGAGGAATATCTGTTATGATTGATACCTTTTTCTTTCTCGGCTTTGAGAGTAGAATATTAATTTTTGTTTAAATA CCATGACCTTTATAAAGACCGACACATCATCAATTTCCCATCTTCTGTTTTCGTGTGCGACGTTTTAGAGAAAAATGGAGAGGTCCTCGTCGCCTCCTCTGTTGTTGCTACTGCTGCTCTCTTCCCTCGCCGTCGTCTGCTCCGCTGTCGAGCCGCCTCAGATCACCGTGAAGCCCGACATTGCTCCCCAGTCCCTCCCGATCAACTACATCCAGGAAGTTGGAAGCTGTTCTTACGAGGTTACAGTAGCAACAAGCTGTTCATCTCCTTCATTTATCACTGACGAAATCGGTGTGTTGTTTGGAGATTCTCATGGAAATCAGATTGTGGAGAAGAAGTTGAGCAATGGAGACAAGGTGTTTGATAGTTGTAATACAGATAGGTTTGTTCTAAATGATCGACCCTGCAGTGTCCAAATTAGTTACATGTATATCTATAAAGACGGAGCTGACGATTGGCTTCCGAACTCTGTTGAAATCTCTGGCTCTGGAATCAAACCCCTTCTGTTCATCTTAAAATCCTCCATCCCAAGAAACAATTGGTTTGGCTTTGATTTACGACAATATCCTTTTCCATCGCCACCGTCCTACAACCCGTCCCCTCCTTTTCCATCGTTGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCACCATCCTCTGCCACCGCCGCCGGAGCCAATTCTTCCTCCTCCGCCTCCACCTAAGCCTGTTCTTCCCCCACCGCCTCCTCCACCATCATCCTCCAGCAAAATCTCTGGTCTGAAATTGGCTAAGGTATCTGTGGTTTTGGGATTGCTGTTTGCCCTTCTTGGAGCAAAACGAAGGTCTGTAAAAATGGTGATGCCTCCTCTTTCTTTCTTCATCTTTTTCTTCTTCTCCATTTCTGCCGCCGTATCATCCGGTTCTCTGCCTCAACCTGCTCCAAAATCCTTAACCATCGGCTATATTCAGAAAGCGGGAGATTGCAACTACAGGGTCAATATAACAACAAGCTGCTCATCCCCTTTCCATATTACTGCTGAAATCGGTGTTCTGTTTGGGGATGCGCATGGAAATCAGATATATGAGCCAAAGCTGGAAGTTGAAAGCAGCAAAGCACTTGCAAAATGCAGCAAAGACATTTTTGAACTGACAGGGCCATGCACAGACCAGATATGTTTCTTTTACCTTTACAAGAAGGGGTCCGACGATTGGATTCCAGAGACTGTAGAAATCTCCAGCCCTGATATTGACACTGTTAAATACAAATACAACTCCTCAATCCCAGAGGACACATGGTATGGCTTTGACGACTGCCAATACTTCACATCGCCACCGCCACCGCCACCATCTCCGCCAGCCCCCTCCACAGCCGGCCATCAGCGGAGGTTGAAGTGGCTTGCTTATGTGATCCCTGTGCTTCTTAGCAGCGCTGTGCTATGAGTGTGATTCTGCATCTTGGCCATGGGCGTGGTTGTATTTTTGATCCACCGCTGTGCCTGTATTTGCTTTGTGTTTTTTGAATCTCTTGATGATCACATCAAGGTCAAAGGAATGTAGTTCATCTTTGATATGCAGAATGGGATTTGATGGAGGAATATCTGTTATGATTGATACCTTTTTCTTTCTCGGCTTTGAGAGTAGAATATTAATTTTTGTTTAAATA ATGGAGAGGTCCTCGTCGCCTCCTCTGTTGTTGCTACTGCTGCTCTCTTCCCTCGCCGTCGTCTGCTCCGCTGTCGAGCCGCCTCAGATCACCGTGAAGCCCGACATTGCTCCCCAGTCCCTCCCGATCAACTACATCCAGGAAGTTGGAAGCTGTTCTTACGAGGTTACAGTAGCAACAAGCTGTTCATCTCCTTCATTTATCACTGACGAAATCGGTGTGTTGTTTGGAGATTCTCATGGAAATCAGATTGTGGAGAAGAAGTTGAGCAATGGAGACAAGGTGTTTGATAGTTGTAATACAGATAGGTTTGTTCTAAATGATCGACCCTGCAGTGTCCAAATTAGTTACATGTATATCTATAAAGACGGAGCTGACGATTGGCTTCCGAACTCTGTTGAAATCTCTGGCTCTGGAATCAAACCCCTTCTGTTCATCTTAAAATCCTCCATCCCAAGAAACAATTGGTTTGGCTTTGATTTACGACAATATCCTTTTCCATCGCCACCGTCCTACAACCCGTCCCCTCCTTTTCCATCGTTGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCACCATCCTCTGCCACCGCCGCCGGAGCCAATTCTTCCTCCTCCGCCTCCACCTAAGCCTGTTCTTCCCCCACCGCCTCCTCCACCATCATCCTCCAGCAAAATCTCTGGTCTGAAATTGGCTAAGGTATCTGTGGTTTTGGGATTGCTGTTTGCCCTTCTTGGAGCAAAACGAAGGTCTGTAAAAATGGTGATGCCTCCTCTTTCTTTCTTCATCTTTTTCTTCTTCTCCATTTCTGCCGCCGTATCATCCGGTTCTCTGCCTCAACCTGCTCCAAAATCCTTAACCATCGGCTATATTCAGAAAGCGGGAGATTGCAACTACAGGGTCAATATAACAACAAGCTGCTCATCCCCTTTCCATATTACTGCTGAAATCGGTGTTCTGTTTGGGGATGCGCATGGAAATCAGATATATGAGCCAAAGCTGGAAGTTGAAAGCAGCAAAGCACTTGCAAAATGCAGCAAAGACATTTTTGAACTGACAGGGCCATGCACAGACCAGATATGTTTCTTTTACCTTTACAAGAAGGGGTCCGACGATTGGATTCCAGAGACTGTAGAAATCTCCAGCCCTGATATTGACACTGTTAAATACAAATACAACTCCTCAATCCCAGAGGACACATGGTATGGCTTTGACGACTGCCAATACTTCACATCGCCACCGCCACCGCCACCATCTCCGCCAGCCCCCTCCACAGCCGGCCATCAGCGGAGGTTGAAGTGGCTTGCTTATGTGATCCCTGTGCTTCTTAGCAGCGCTGTGCTATGA MERSSSPPLLLLLLLSSLAVVCSAVEPPQITVKPDIAPQSLPINYIQEVGSCSYEVTVATSCSSPSFITDEIGVLFGDSHGNQIVEKKLSNGDKVFDSCNTDRFVLNDRPCSVQISYMYIYKDGADDWLPNSVEISGSGIKPLLFILKSSIPRNNWFGFDLRQYPFPSPPSYNPSPPFPSLSPPPPPPPPPPPHHPLPPPPEPILPPPPPPKPVLPPPPPPPSSSSKISGLKLAKVSVVLGLLFALLGAKRRSVKMVMPPLSFFIFFFFSISAAVSSGSLPQPAPKSLTIGYIQKAGDCNYRVNITTSCSSPFHITAEIGVLFGDAHGNQIYEPKLEVESSKALAKCSKDIFELTGPCTDQICFFYLYKKGSDDWIPETVEISSPDIDTVKYKYNSSIPEDTWYGFDDCQYFTSPPPPPPSPPAPSTAGHQRRLKWLAYVIPVLLSSAVL
BLAST of CmaCh16G001710 vs. TrEMBL
Match: A0A0A0L699_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G177960 PE=4 SV=1) HSP 1 Score: 307.8 bits (787), Expect = 2.2e-80 Identity = 181/250 (72.40%), Postives = 194/250 (77.60%), Query Frame = 1
BLAST of CmaCh16G001710 vs. TrEMBL
Match: A0A0A0L8G7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G177970 PE=4 SV=1) HSP 1 Score: 295.0 bits (754), Expect = 1.5e-76 Identity = 146/199 (73.37%), Postives = 160/199 (80.40%), Query Frame = 1
BLAST of CmaCh16G001710 vs. TrEMBL
Match: B9ICY2_POPTR (Embryo-specific family protein OS=Populus trichocarpa GN=POPTR_0015s14220g PE=4 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 2.2e-35 Identity = 82/193 (42.49%), Postives = 112/193 (58.03%), Query Frame = 1
BLAST of CmaCh16G001710 vs. TrEMBL
Match: V4S840_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006003mg PE=4 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 1.2e-33 Identity = 81/197 (41.12%), Postives = 108/197 (54.82%), Query Frame = 1
BLAST of CmaCh16G001710 vs. TrEMBL
Match: A0A087G5G2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G067600 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 1.3e-32 Identity = 66/146 (45.21%), Postives = 92/146 (63.01%), Query Frame = 1
BLAST of CmaCh16G001710 vs. TAIR10
Match: AT5G62200.1 (AT5G62200.1 Embryo-specific protein 3, (ATS3)) HSP 1 Score: 141.4 bits (355), Expect = 1.4e-33 Identity = 68/148 (45.95%), Postives = 90/148 (60.81%), Query Frame = 1
BLAST of CmaCh16G001710 vs. TAIR10
Match: AT5G07190.1 (AT5G07190.1 seed gene 3) HSP 1 Score: 117.1 bits (292), Expect = 2.8e-26 Identity = 75/221 (33.94%), Postives = 110/221 (49.77%), Query Frame = 1
BLAST of CmaCh16G001710 vs. TAIR10
Match: AT2G41475.1 (AT2G41475.1 Embryo-specific protein 3, (ATS3)) HSP 1 Score: 117.1 bits (292), Expect = 2.8e-26 Identity = 59/171 (34.50%), Postives = 90/171 (52.63%), Query Frame = 1
BLAST of CmaCh16G001710 vs. TAIR10
Match: AT5G62210.1 (AT5G62210.1 Embryo-specific protein 3, (ATS3)) HSP 1 Score: 115.2 bits (287), Expect = 1.1e-25 Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 1
BLAST of CmaCh16G001710 vs. NCBI nr
Match: gi|659077284|ref|XP_008439124.1| (PREDICTED: uncharacterized protein LOC103484014 isoform X1 [Cucumis melo]) HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85 Identity = 158/202 (78.22%), Postives = 170/202 (84.16%), Query Frame = 1
BLAST of CmaCh16G001710 vs. NCBI nr
Match: gi|659077282|ref|XP_008439123.1| (PREDICTED: sulfated surface glycoprotein 185-like [Cucumis melo]) HSP 1 Score: 311.2 bits (796), Expect = 2.9e-81 Identity = 187/254 (73.62%), Postives = 200/254 (78.74%), Query Frame = 1
BLAST of CmaCh16G001710 vs. NCBI nr
Match: gi|449460780|ref|XP_004148123.1| (PREDICTED: WAS protein family homolog 1-like [Cucumis sativus]) HSP 1 Score: 307.8 bits (787), Expect = 3.2e-80 Identity = 181/250 (72.40%), Postives = 194/250 (77.60%), Query Frame = 1
BLAST of CmaCh16G001710 vs. NCBI nr
Match: gi|449460842|ref|XP_004148153.1| (PREDICTED: uncharacterized protein LOC101215783 [Cucumis sativus]) HSP 1 Score: 295.0 bits (754), Expect = 2.2e-76 Identity = 146/199 (73.37%), Postives = 160/199 (80.40%), Query Frame = 1
BLAST of CmaCh16G001710 vs. NCBI nr
Match: gi|659077286|ref|XP_008439125.1| (PREDICTED: uncharacterized protein LOC103484014 isoform X2 [Cucumis melo]) HSP 1 Score: 188.0 bits (476), Expect = 3.7e-44 Identity = 106/202 (52.48%), Postives = 123/202 (60.89%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |