CmaCh15G005730 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G005730
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Carboxypeptidase D
Location	Cma_Chr15 : 2698634 .. 2700793 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTCGCTTATCGTTCTTACTTCTCTCTGTTACTTCTTCAGTGATACTTCACTTAGCGAGCCGTCCTCAACCGCTCCATTTCGTCAGGTTTCTGCTTTGTTTTCGACGTAATGTTTCATTTTCTTTGTTTATGCCTATGAGAACGCGAAGCTTTCTGTTTGGCGGCTGAGACATTGGTGTGATCGAGTAGTTGATGATTTTGAACGTAGGAACTAGTGCTCCGCGAGTTTGATTAGTTCCATACATGTATCTTTTTTACTTTATGTTCCTTCATTACATTTTGATTGTTTTCTGTGAGAATTGAGGCGAGGAAAGAGTAAGTACGATCCAAAACGTTTGTCGTCCTAAATTTTATTTTGTTCTTCGTTTGATCTGTATTTTAGATTGCGCGTCTCGGACTTTGGATTATTGTGCTTGATCGTTTGATTTGAGTTTGTGCGTCTTTAAACCGGTGTTCAGTTCGTATATGCAGTAGTTTTCAATAGTTGAGGCTTTTTCATTCTAAATTTCTTCGTTATTCCTTTGTCATGTACAACCTTAGATTGCGCGGCTCGGATTTCCAGTTATTGTCTATGACTATTTGAGTTGATTTTGAATGTATTTTAAATCGGTGATGCTGTAGATTTCAAGGGTCGTGCACAGGGCGGTTCTGCTAGATTTTTACTTGAGGACAATAAATCTCAAGGAAGGTAGCTAGTCCTTGGAGACTTCCAGTATTTTGTGGTGACTTAAATTTTGTTTTCTGTATTATGTTATTTTGAGGTCTGAAATGTTTGAAAATCTATTTAGTGATAGCATCATGCAAGCTTTCAATAAAGAGCTTGAGGAGGCCGTTAAAGCTTTCGGTCAAAGATGTGGTAGAATTTCTAGGATCTACAGGTAATTCTAAGAGTTGTAATTCCCTTATTACCACGTGAAGTAGGCCTAGTTTGTGTGCTGACGTCTCTCTCGCTTTCCTTTCCTTGCTCTTGGATGCTTGATCAGTATTGGAGACAGCGTGCAAGGGTTTCCACTGGTAATCATTCCAAAATGTTGGTTCTTGTGTTTATTCTAAATCTTCTCTCCATAATATCTCTGCTTTTAAGCCGAAATTATCAATGTCTGATAAATGCTGTCATCTGATATACACTAGTGGGTAATGGAAATCTCTGACAAGCCAGGCCAGGGAGGCAAAACCTGCATTTAAGGTGAATGGTCTACTACTTGCATATAGTAGTCATGAATGACTGCCCATCAACACACCGGACGGCTTTCATTAGTGAATTTTTTTTTGTCCTCCAGTAAACATTAAGTTATAGGGGGGGAAAAGGTATCTCTTGCATGAATGATTGATAATTTGAAACACGAAACTGTAAACTCTAACATTACTGTTGTTATTTACCTGTTCTGTGGGGCTATATGCCATGATGAATTGCTAAAGCATGCGTCCATTGTCAAATTTCCGAATTATTAGTCATCTTTGGTCTACATCGTTGCTCTTTGACTGCATGTACTATATAGAAAGAAAAATCATAGGGTGAAAAGCAAGAAAGCTCTTCGACTGCATGTACTGTTTATCTGTATGTATAGGCCAAGTGTAGAATTGAATGGAGTATTTTTTTTTATAAAAGCACCTGTGGACTTTCTCGAGGAAGTTTGTAATGATTTTATTTGATTTTCAGTACATAGGTAATGCACATGGAGATGAGCCTGTTGGCTGATAGCTTCTTTTGCAATTTGCTAACTGAATATGTGATAGCACCTGAAGGATCCATTTGTAACTTACATATTTTATCTTCCATTTACATACATATCCATTCTCGTTCATATTCACCATGTCACATACATCAGTTTTGGACTGAATCTATTAATTGTTGCAATTACATTTCCAAACTCCATTATAGTTTTTTTTTTTTTTCCCTCCTTTATATTATAATTCCTAGGTTTGAGAAAAGAGATGAATTCACACTTTAAATACAAATGGACTTTTGTTGTTGATTTAAGAATTATTATTATTGTTATTTATATTTTCTAAGTTTGCACCTGTTATGTCGCTCTCTACTCTCAGCATCCCAAACAGTAGCATATTTTCTTAATTTCAGGATTTTCCCATCCTTTTACCTATGCCAATGCACGTGAAATGTCTTGTAGTGAGGAATTGCCCAGCGATCAATAA

mRNA sequence

ATGAAGCTTCGCTTATCGTTCTTACTTCTCTCTGTTACTTCTTCAGTGATACTTCACTTAGCGAGCCGTCCTCAACCGCTCCATTTCGTCAGGTTTCTGCTTTGTTTTCGACAATTGAGGCGAGGAAAGAATTTCAAGGGTCGTGCACAGGGCGGTTCTGCTAGATTTTTACTTGAGGACAATAAATCTCAAGGAAGTGATAGCATCATGCAAGCTTTCAATAAAGAGCTTGAGGAGGCCGTTAAAGCTTTCGGTCAAAGATGTGGTAGAATTTCTAGGATCTACAGTATTGGAGACAGCGTGCAAGGGTTTCCACTGGTAATGCACATGGAGATGAGCCTGTTGGCTGATAGCTTCTTTTGCAATTTGCTAACTGAATATGTGATAGCACCTGAAGGATCCATTTGATTTTCCCATCCTTTTACCTATGCCAATGCACGTGAAATGTCTTGTAGTGAGGAATTGCCCAGCGATCAATAA

Coding sequence (CDS)

ATGAAGCTTCGCTTATCGTTCTTACTTCTCTCTGTTACTTCTTCAGTGATACTTCACTTAGCGAGCCGTCCTCAACCGCTCCATTTCGTCAGGTTTCTGCTTTGTTTTCGACAATTGAGGCGAGGAAAGAATTTCAAGGGTCGTGCACAGGGCGGTTCTGCTAGATTTTTACTTGAGGACAATAAATCTCAAGGAAGTGATAGCATCATGCAAGCTTTCAATAAAGAGCTTGAGGAGGCCGTTAAAGCTTTCGGTCAAAGATGTGGTAGAATTTCTAGGATCTACAGTATTGGAGACAGCGTGCAAGGGTTTCCACTGGTAATGCACATGGAGATGAGCCTGTTGGCTGATAGCTTCTTTTGCAATTTGCTAACTGAATATGTGATAGCACCTGAAGGATCCATTTGA

Protein sequence

MKLRLSFLLLSVTSSVILHLASRPQPLHFVRFLLCFRQLRRGKNFKGRAQGGSARFLLEDNKSQGSDSIMQAFNKELEEAVKAFGQRCGRISRIYSIGDSVQGFPLVMHMEMSLLADSFFCNLLTEYVIAPEGSI

Homology

[Close]

BLAST of CmaCh15G005730 vs. TrEMBL
Match: A0A0A0KCK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G054840 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 65/115 (56.52%), Postives = 77/115 (66.96%), Query Frame = 1


Query: 1   MKLRLSFLLLSVTSSVILHLASRPQPLHFVRFLLCFRQLRRGKNFKGRAQGGSARFLLED 60
           MK  L F LLS+TS  + HLA  P   H  R           ++F   A G SARFLLED
Sbjct: 1   MKFLLFFYLLSLTSPALFHLALAPGASHISRGASNISI--SPEDFDSHAYGSSARFLLED 60

Query: 61  NKSQGSDSIMQAF--NKELEEAVKAFGQRCGRISRIYSIGDSVQGFPLVMHMEMS 114
           NKSQG  SIMQ +  NK+LEEA+KAFG++C +ISRIYSIGDSVQGFPL + ME+S
Sbjct: 61  NKSQG--SIMQGYMTNKDLEEAIKAFGKKCSQISRIYSIGDSVQGFPLWV-MEIS 110

[Close]

BLAST of CmaCh15G005730 vs. TrEMBL
Match: A0A061FQM5_THECC (Carboxypeptidase D OS=Theobroma cacao GN=TCM_035722 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.9e-08
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 1


Query: 45  FKGRAQGGSARFLLEDNKSQGSDSIMQAF--NKELEEAVKAFGQRCGRISRIYSIGDSVQ 104
           F+  +    AR L E+N+SQ S  I + +  N ELE+AVK FGQRC  ISRIYSIG SV 
Sbjct: 31  FRNDSYAAFARHLFEENQSQPSIDIARGYMTNSELEKAVKEFGQRCSHISRIYSIGTSVN 90

Query: 105 GFPL 107
           G PL
Sbjct: 91  GVPL 94

[Close]

BLAST of CmaCh15G005730 vs. TrEMBL
Match: A0A0B0MK62_GOSAR (Carboxypeptidase D OS=Gossypium arboreum GN=F383_25168 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 45  FKGRAQGGSARFLLEDNKSQGSDS-IMQAF--NKELEEAVKAFGQRCGRISRIYSIGDSV 104
           F+  +  GS R L+E+N+S    + I + +  N ELE AVK FG+RC  ISRIYSIG+SV
Sbjct: 35  FENESYAGSGRHLIEENQSHHPRTDIARGYMTNSELERAVKEFGRRCSHISRIYSIGESV 94

Query: 105 QGFPL 107
           +GFPL
Sbjct: 95  RGFPL 99

[Close]

BLAST of CmaCh15G005730 vs. TrEMBL
Match: A0A0D2S9W2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G286300 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 45  FKGRAQGGSARFLLEDNKSQGSDS-IMQAF--NKELEEAVKAFGQRCGRISRIYSIGDSV 104
           F+  +  GS R L+E+N+S    + I + +  N ELE AVK FG+RC  ISRIYSIG+SV
Sbjct: 35  FENESYAGSGRHLIEENQSHHPRTDIARGYMTNSELERAVKEFGRRCSHISRIYSIGESV 94

Query: 105 QGFPL 107
           +GFPL
Sbjct: 95  RGFPL 99

[Close]

BLAST of CmaCh15G005730 vs. TrEMBL
Match: A0A0D2QPW3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G286300 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 45  FKGRAQGGSARFLLEDNKSQGSDS-IMQAF--NKELEEAVKAFGQRCGRISRIYSIGDSV 104
           F+  +  GS R L+E+N+S    + I + +  N ELE AVK FG+RC  ISRIYSIG+SV
Sbjct: 35  FENESYAGSGRHLIEENQSHHPRTDIARGYMTNSELERAVKEFGRRCSHISRIYSIGESV 94

Query: 105 QGFPL 107
           +GFPL
Sbjct: 95  RGFPL 99

[Close]

BLAST of CmaCh15G005730 vs. TAIR10
Match: AT1G71696.2 (AT1G71696.2 carboxypeptidase D, putative)

HSP 1 Score: 48.1 bits (113), Expect = 4.8e-06
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1


Query: 74  NKELEEAVKAFGQRCGRISRIYSIGDSVQGFPL 107
           N +LE+A+K F +RC +ISR+YSIG SV GFPL
Sbjct: 68  NDDLEKAMKDFTKRCSKISRLYSIGKSVNGFPL 100

[Close]

BLAST of CmaCh15G005730 vs. NCBI nr
Match: gi|700190908|gb|KGN46112.1| (hypothetical protein Csa_6G054840 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-18
Identity = 65/115 (56.52%), Postives = 77/115 (66.96%), Query Frame = 1


Query: 1   MKLRLSFLLLSVTSSVILHLASRPQPLHFVRFLLCFRQLRRGKNFKGRAQGGSARFLLED 60
           MK  L F LLS+TS  + HLA  P   H  R           ++F   A G SARFLLED
Sbjct: 1   MKFLLFFYLLSLTSPALFHLALAPGASHISRGASNISI--SPEDFDSHAYGSSARFLLED 60

Query: 61  NKSQGSDSIMQAF--NKELEEAVKAFGQRCGRISRIYSIGDSVQGFPLVMHMEMS 114
           NKSQG  SIMQ +  NK+LEEA+KAFG++C +ISRIYSIGDSVQGFPL + ME+S
Sbjct: 61  NKSQG--SIMQGYMTNKDLEEAIKAFGKKCSQISRIYSIGDSVQGFPLWV-MEIS 110

[Close]

BLAST of CmaCh15G005730 vs. NCBI nr
Match: gi|659113754|ref|XP_008456738.1| (PREDICTED: carboxypeptidase D isoform X1 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-16
Identity = 64/123 (52.03%), Postives = 77/123 (62.60%), Query Frame = 1


Query: 1   MKLRLSFLLLSVTSSVILHLASRPQPLHFVRFLLCFRQLRRGKN--------FKGRAQGG 60
           MK  L FLLLS++S  + HLA                 L RG +        F   A GG
Sbjct: 1   MKFLLFFLLLSLSSPALFHLA-----------------LARGASNISISPVDFDSHAYGG 60

Query: 61  SARFLLEDNKSQGSDSIMQAF--NKELEEAVKAFGQRCGRISRIYSIGDSVQGFPLVMHM 114
           SAR LLEDNKS+G  SIMQ +  NK+LEEA+KAFG++C +ISRIYSIGDSVQGFPL + M
Sbjct: 61  SARVLLEDNKSEG--SIMQGYMTNKDLEEAIKAFGKKCSQISRIYSIGDSVQGFPLWV-M 103

[Close]

BLAST of CmaCh15G005730 vs. NCBI nr
Match: gi|657988407|ref|XP_008386374.1| (PREDICTED: carboxypeptidase D [Malus domestica])

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 48/108 (44.44%), Postives = 57/108 (52.78%), Query Frame = 1


Query: 1   MKLRLSFLLLSVTSSVILHLASRPQPLHFVRFLLCFRQLRRGKNFKGRAQGGSARFLLED 60
           MKL LS L LS++ S  L  A+    LH             G  F  R  GGS R L ED
Sbjct: 1   MKLALSILFLSLSFSSFLRTATARGGLH--------SSYPPGIEFDPR--GGSGRQLFED 60

Query: 61  NKSQGSDSIMQAF--NKELEEAVKAFGQRCGRISRIYSIGDSVQGFPL 107
            KSQ    + Q +  N +LE A+K FG+RC  ISR+YSIG SV G PL
Sbjct: 61  KKSQKRVDVAQGYMTNSDLERAIKVFGRRCSNISRVYSIGKSVNGVPL 98

[Close]

BLAST of CmaCh15G005730 vs. NCBI nr
Match: gi|695067033|ref|XP_009380424.1| (PREDICTED: carboxypeptidase D [Musa acuminata subsp. malaccensis])

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-08
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 45  FKGRAQGGSARFLLEDNKSQGSDSIMQAF--NKELEEAVKAFGQRCGRISRIYSIGDSVQ 104
           F GR  G  AR L EDN  + +D + + +  N ELEEAVK F +RC  ISRIYSIG SVQ
Sbjct: 40  FMGRGGGLLARRLFEDNYPEITDEMTRGYMSNSELEEAVKKFSKRCANISRIYSIGKSVQ 99

Query: 105 GFPL 107
           G+PL
Sbjct: 100 GYPL 103

[Close]

BLAST of CmaCh15G005730 vs. NCBI nr
Match: gi|590601289|ref|XP_007019609.1| (Carboxypeptidase D [Theobroma cacao])

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 1


Query: 45  FKGRAQGGSARFLLEDNKSQGSDSIMQAF--NKELEEAVKAFGQRCGRISRIYSIGDSVQ 104
           F+  +    AR L E+N+SQ S  I + +  N ELE+AVK FGQRC  ISRIYSIG SV 
Sbjct: 31  FRNDSYAAFARHLFEENQSQPSIDIARGYMTNSELEKAVKEFGQRCSHISRIYSIGTSVN 90

Query: 105 GFPL 107
           G PL
Sbjct: 91  GVPL 94

The following BLAST results are available for this feature:

BLAST of CmaCh15G005730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh15G005730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCK0_CUCSA	1.6e-18	56.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G054840 PE=4 SV=1	[more]
A0A061FQM5_THECC	9.9e-08	54.69	Carboxypeptidase D OS=Theobroma cacao GN=TCM_035722 PE=4 SV=1	[more]
A0A0B0MK62_GOSAR	2.2e-07	52.31	Carboxypeptidase D OS=Gossypium arboreum GN=F383_25168 PE=4 SV=1	[more]
A0A0D2S9W2_GOSRA	2.2e-07	52.31	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G286300 PE=4 SV=1	[more]
A0A0D2QPW3_GOSRA	2.2e-07	52.31	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G286300 PE=4 SV=1	[more]

BLAST of CmaCh15G005730 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71696.2	4.8e-06	63.64	carboxypeptidase D, putative	[more]

BLAST of CmaCh15G005730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190908\|gb\|KGN46112.1\|	2.3e-18	56.52	hypothetical protein Csa_6G054840 [Cucumis sativus]	[more]
gi\|659113754\|ref\|XP_008456738.1\|	4.9e-16	52.03	PREDICTED: carboxypeptidase D isoform X1 [Cucumis melo]	[more]
gi\|657988407\|ref\|XP_008386374.1\|	1.3e-08	44.44	PREDICTED: carboxypeptidase D [Malus domestica]	[more]
gi\|695067033\|ref\|XP_009380424.1\|	3.7e-08	56.25	PREDICTED: carboxypeptidase D [Musa acuminata subsp. malaccensis]	[more]
gi\|590601289\|ref\|XP_007019609.1\|	1.4e-07	54.69	Carboxypeptidase D [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0010082	regulation of root meristem growth
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0010008	endosome membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004181	metallocarboxypeptidase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G005730.1	CmaCh15G005730.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G005730	Cucsa.363940	Cucumber (Gy14) v1	cgycmaB0995
CmaCh15G005730	Cla013785	Watermelon (97103) v1	cmawmB259
CmaCh15G005730	Csa6G054840	Cucumber (Chinese Long) v2	cmacuB308
CmaCh15G005730	ClCG08G007340	Watermelon (Charleston Gray)	cmawcgB272
CmaCh15G005730	CSPI06G04660	Wild cucumber (PI 183967)	cmacpiB315
CmaCh15G005730	CmoCh04G025790	Cucurbita moschata (Rifu)	cmacmoB309
CmaCh15G005730	Cp4.1LG01g21320	Cucurbita pepo (Zucchini)	cmacpeB318
CmaCh15G005730	CsaV3_6G004990	Cucumber (Chinese Long) v3	cmacucB0362
CmaCh15G005730	Cla97C08G150030	Watermelon (97103) v2	cmawmbB318
CmaCh15G005730	Bhi04G001341	Wax gourd	cmawgoB0391
CmaCh15G005730	CsGy6G004610	Cucumber (Gy14) v2	cgybcmaB740
CmaCh15G005730	Carg01622	Silver-seed gourd	carcmaB1148
CmaCh15G005730	Carg15807	Silver-seed gourd	carcmaB0087

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G005730	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G005730	Bottle gourd (USVL1VR-Ls)	cmalsiB294
CmaCh15G005730	Melon (DHL92) v3.6.1	cmamedB311
CmaCh15G005730	Watermelon (97103) v2	cmawmbB317
CmaCh15G005730	Watermelon (97103) v2	cmawmbB319
CmaCh15G005730	Cucurbita maxima (Rimu)	cmacmaB325
CmaCh15G005730	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G005730	Melon (DHL92) v3.5.1	cmameB271
CmaCh15G005730	Watermelon (Charleston Gray)	cmawcgB271
CmaCh15G005730	Watermelon (Charleston Gray)	cmawcgB273
CmaCh15G005730	Watermelon (97103) v1	cmawmB258
CmaCh15G005730	Watermelon (97103) v1	cmawmB260