CmaCh15G005630 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G005630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	F-actin capping protein beta subunit
Location	Cma_Chr15 : 2632465 .. 2634313 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCACAGAGAAAGATCTCGTTCCCGCGAGGGAAGCTCGGATCAAACCAGAGGCTCTCCTCCTTTTCTCCTCCTTTTCTCCTCCAACCAAACAAAAAGCAACGAACAAAATCACTTTTCTTTTCGAATTCTCTTCCATTTCTCCTTTCGTTTTCGCTTCTCATTTGAATCTTGTTTTCAGAAATTGTGTCTCCTTCTGGTGCTGCGTTGATTTTGAGGCGAAAAACACAGGAAACAATGGAAGCGGCCATGGGATTGATGAGGAGAATGCCTCCAAGGCACTCCGAAACAGCGCTTTCGGCTCTTCTCACTCTCTTGCCCCACCACTCTTCCGATCTACTGTCTCAGGTTGACCAGCCTCTTCAGGTGATGTTTCTTCTGTTTCCCCCTTTCTCCTCTTGTTCGTCGCCTGGTTTTTAGAAATTTCTTAGAGATTTTGTTGCTTTTTGTTAATTATCAGCATTTGTTTTCCCTTTTAGCTGTTATCCGAGGTTTTTTTGGTGTGTAGGGAGTGGATTTTGATGAATGTTCCTGTTCTTCCATAGCTATAGGTGTAATCCTTGTGCTGGTTCTAATTAAATGGAAAGTGCATCAAGTAATGAGGATTATGGATGGAATTCTGGAATAATGAGAGGCTTTGTTATCTCATAAGGTTGAATACTTTTTTAGTACAACAAATGGGGCAGGGGATTTGAATCTCTGACCTTGAGTAAGGTAGTACATACCAATTATAACTTAAATATGCTCACTTTGGTGGGGGCAAGATTGAATAATTAAGAGTGGTTCCTTAATTACAAGGTCTTCTTTGTTTAAATAATTAGGTATAGGTGTTGTTTTCCTTTCCCCTTTTCCCCTCTTCATGTTACTCTTGGCTCTCTCTTGGATTATCACTACTATTCTGATGAACTTTTGTCCTAGTCGCGTATGTTTTCTATGATAAAGTGCATTTTATGAACTCCCCCCTCCCTCATTTCAACTGACAGTGCTTCAACTTGTTGAAATGAACTTATTTTACTTGATTGGAGACCTTTTTGTAGTTGGCACCATCATTTTGTGGGGTTTTTTGGCTGGTTATTCAACTTTTTTATTTTTTTCTGAATGAGAAATTACAACATTTACAGGCCTTATGCGATGTGGATAATGGGAAGGAATTTATTTTGTGTGAATACAACAGAGATGCAGATTCATACAGGTAAGTACTTGGATCCACTTTTGCAGGATTTGGGCATCTGGCATGAGTAATATGCATCACAATGGTTTTAGCAAGGTTTCGTCATTTAATAGACATTTTGATATCTGCCTTAATGTTTGAGGTTGTGATGCAAAATGTTCCAGTTATGACTAGCACTTAAAATGCTTGCCTAAGTTCAAGACAAGTCTATTGCATGTTTCATATTTCCATGTGTGTTTGTACTTATCTACTAGATAGGTAAAGCCAGTGAATATGCATGCAATATGTAAATCCAATTTCGTTGTAAGAATACATTTCTTACATGATTATAAAGGGCTTCCACTGGCGAAAATTCTGAATCCATTGTTTTTCATCGTACCACCGATTATGTAAGCTAACAAGTATAACAGCATTTCAGTATTGGAAAAAGGAAAACACTAAATTTGCTGACAAATATAAGAATTTAAGTTTGGCGCATGATCTATGGTTGGGTAGATTAGGAAGTAGGTTAGTGACATATATTTTTTCCTTTTTTTCCTAGTATTTTCTGTCAATGATTTTTTGATATGCACTACATGATGCTATATTCTTTTCTTGCCAAATAGATCACCATGGTCAAACAAATACCATCCACCATTGGAAGATGGATCGATGCCATCCATAGAGATGAGGAAACTTGA

mRNA sequence

TGCACAGAGAAAGATCTCGTTCCCGCGAGGGAAGCTCGGATCAAACCAGAGGCTCTCCTCCTTTTCTCCTCCTTTTCTCCTCCAACCAAACAAAAAGCAACGAACAAAATCACTTTTCTTTTCGAATTCTCTTCCATTTCTCCTTTCGTTTTCGCTTCTCATTTGAATCTTGTTTTCAGAAATTGTGTCTCCTTCTGGTGCTGCGTTGATTTTGAGGCGAAAAACACAGGAAACAATGGAAGCGGCCATGGGATTGATGAGGAGAATGCCTCCAAGGCACTCCGAAACAGCGCTTTCGGCTCTTCTCACTCTCTTGCCCCACCACTCTTCCGATCTACTGTCTCAGGTTGACCAGCCTCTTCAGATCACCATGGTCAAACAAATACCATCCACCATTGGAAGATGGATCGATGCCATCCATAGAGATGAGGAAACTTGA

Coding sequence (CDS)

ATGGAAGCGGCCATGGGATTGATGAGGAGAATGCCTCCAAGGCACTCCGAAACAGCGCTTTCGGCTCTTCTCACTCTCTTGCCCCACCACTCTTCCGATCTACTGTCTCAGGTTGACCAGCCTCTTCAGATCACCATGGTCAAACAAATACCATCCACCATTGGAAGATGGATCGATGCCATCCATAGAGATGAGGAAACTTGA

Protein sequence

MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQITMVKQIPSTIGRWIDAIHRDEET

Homology

[Close]

BLAST of CmaCh15G005630 vs. Swiss-Prot
Match: CAPZB_ARATH (Probable F-actin-capping protein subunit beta OS=Arabidopsis thaliana GN=At1g71790 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.7e-12
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1


Query: 1  MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQI 45
          MEAA+GL+RRMPP+ SETALSALL+L+P HSSDLLSQVD PLQ+
Sbjct: 1  MEAALGLLRRMPPKQSETALSALLSLIPQHSSDLLSQVDLPLQV 44

[Close]

BLAST of CmaCh15G005630 vs. TrEMBL
Match: A0A0A0KEA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052710 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-14
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 1  MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQI 45
          MEAAMGLMRRMPP+HSETALSALLTLLPHHSSDLLSQVDQPLQ+
Sbjct: 1  MEAAMGLMRRMPPKHSETALSALLTLLPHHSSDLLSQVDQPLQV 44

[Close]

BLAST of CmaCh15G005630 vs. TrEMBL
Match: A0A124SGR7_CYNCS (F-actin capping protein, beta subunit, conserved site-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_014401 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-13
Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 1  MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQI 45
          MEAAMGLMRRMPP+H+ETALSALL+LLPHHSSDLLSQVDQPLQ+
Sbjct: 1  MEAAMGLMRRMPPKHTETALSALLSLLPHHSSDLLSQVDQPLQV 44

[Close]

BLAST of CmaCh15G005630 vs. TrEMBL
Match: A0A068TXV5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00034671001 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.9e-13
Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 1  MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQI 45
          MEAAMGLMRR+PP+HSETALSALL+LLPHHSSDLLSQVDQPLQ+
Sbjct: 1  MEAAMGLMRRIPPKHSETALSALLSLLPHHSSDLLSQVDQPLQV 44

[Close]

BLAST of CmaCh15G005630 vs. TrEMBL
Match: V4T3P9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002214mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-12
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1


Query: 1  MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQITM 47
          MEAAMGLMRRMPP+HSETALSALL+LLP HSSDLLSQVDQPLQ+ +
Sbjct: 1  MEAAMGLMRRMPPKHSETALSALLSLLPDHSSDLLSQVDQPLQVLL 46

[Close]

BLAST of CmaCh15G005630 vs. TrEMBL
Match: V4TDQ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002214mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-12
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1


Query: 1  MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQITM 47
          MEAAMGLMRRMPP+HSETALSALL+LLP HSSDLLSQVDQPLQ+ +
Sbjct: 1  MEAAMGLMRRMPPKHSETALSALLSLLPDHSSDLLSQVDQPLQVLL 46

[Close]

BLAST of CmaCh15G005630 vs. TAIR10
Match: AT1G71790.1 (AT1G71790.1 Subunits of heterodimeric actin filament capping protein Capz superfamily)

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-13
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1


Query: 1  MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQI 45
          MEAA+GL+RRMPP+ SETALSALL+L+P HSSDLLSQVD PLQ+
Sbjct: 1  MEAALGLLRRMPPKQSETALSALLSLIPQHSSDLLSQVDLPLQV 44

[Close]

BLAST of CmaCh15G005630 vs. NCBI nr
Match: gi|449446365|ref|XP_004140942.1| (PREDICTED: probable F-actin-capping protein subunit beta [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-14
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 1  MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQI 45
          MEAAMGLMRRMPP+HSETALSALLTLLPHHSSDLLSQVDQPLQ+
Sbjct: 1  MEAAMGLMRRMPPKHSETALSALLTLLPHHSSDLLSQVDQPLQV 44

[Close]

BLAST of CmaCh15G005630 vs. NCBI nr
Match: gi|659113680|ref|XP_008456700.1| (PREDICTED: probable F-actin-capping protein subunit beta [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-14
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 1  MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQI 45
          MEAAMGLMRRMPP+HSETALSALLTLLPHHSSDLLSQVDQPLQ+
Sbjct: 1  MEAAMGLMRRMPPKHSETALSALLTLLPHHSSDLLSQVDQPLQV 44

[Close]

BLAST of CmaCh15G005630 vs. NCBI nr
Match: gi|976922867|gb|KVI07217.1| (F-actin capping protein, beta subunit, conserved site-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-13
Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 1  MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQI 45
          MEAAMGLMRRMPP+H+ETALSALL+LLPHHSSDLLSQVDQPLQ+
Sbjct: 1  MEAAMGLMRRMPPKHTETALSALLSLLPHHSSDLLSQVDQPLQV 44

[Close]

BLAST of CmaCh15G005630 vs. NCBI nr
Match: gi|661895335|emb|CDP01140.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 81.6 bits (200), Expect = 5.6e-13
Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 1  MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQI 45
          MEAAMGLMRR+PP+HSETALSALL+LLPHHSSDLLSQVDQPLQ+
Sbjct: 1  MEAAMGLMRRIPPKHSETALSALLSLLPHHSSDLLSQVDQPLQV 44

[Close]

BLAST of CmaCh15G005630 vs. NCBI nr
Match: gi|698572648|ref|XP_009775201.1| (PREDICTED: probable F-actin-capping protein subunit beta [Nicotiana sylvestris])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 39/44 (88.64%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 1  MEAAMGLMRRMPPRHSETALSALLTLLPHHSSDLLSQVDQPLQI 45
          MEAAMGLMRR+PP+H+ETALSALL+LLPHHSSDLLSQVDQPLQ+
Sbjct: 1  MEAAMGLMRRIPPKHTETALSALLSLLPHHSSDLLSQVDQPLQV 44

The following BLAST results are available for this feature:

BLAST of CmaCh15G005630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CAPZB_ARATH	4.7e-12	79.55	Probable F-actin-capping protein subunit beta OS=Arabidopsis thaliana GN=At1g717...	[more]

BLAST of CmaCh15G005630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEA7_CUCSA	4.6e-14	95.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052710 PE=4 SV=1	[more]
A0A124SGR7_CYNCS	3.0e-13	90.91	F-actin capping protein, beta subunit, conserved site-containing protein OS=Cyna...	[more]
A0A068TXV5_COFCA	3.9e-13	90.91	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00034671001 PE=4 SV=1	[more]
V4T3P9_9ROSI	1.1e-12	86.96	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002214mg PE=4 SV=1	[more]
V4TDQ6_9ROSI	1.1e-12	86.96	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002214mg PE=4 SV=1	[more]

BLAST of CmaCh15G005630 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71790.1	2.7e-13	79.55	Subunits of heterodimeric actin filament capping protein Capz superf...	[more]

BLAST of CmaCh15G005630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446365\|ref\|XP_004140942.1\|	6.6e-14	95.45	PREDICTED: probable F-actin-capping protein subunit beta [Cucumis sativus]	[more]
gi\|659113680\|ref\|XP_008456700.1\|	6.6e-14	95.45	PREDICTED: probable F-actin-capping protein subunit beta [Cucumis melo]	[more]
gi\|976922867\|gb\|KVI07217.1\|	4.3e-13	90.91	F-actin capping protein, beta subunit, conserved site-containing protein [Cynara...	[more]
gi\|661895335\|emb\|CDP01140.1\|	5.6e-13	90.91	unnamed protein product [Coffea canephora]	[more]
gi\|698572648\|ref\|XP_009775201.1\|	1.2e-12	88.64	PREDICTED: probable F-actin-capping protein subunit beta [Nicotiana sylvestris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001698	CAPZB

Vocabulary: **Cellular Component**
Term	Definition
GO:0008290	F-actin capping protein complex

Vocabulary: **Biological Process**
Term	Definition
GO:0051016	barbed-end actin filament capping

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051016	barbed-end actin filament capping
biological_process	GO:0009408	response to heat
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0008290	F-actin capping protein complex
molecular_function	GO:0003779	actin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G005630.1	CmaCh15G005630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001698	F-actin-capping protein subunit beta	PANTHER	PTHR10619	F-ACTIN-CAPPING PROTEIN SUBUNIT BETA	coord: 1..46 score: 7.8
IPR001698	F-actin-capping protein subunit beta	PFAM	PF01115	F_actin_cap_B	coord: 1..49 score: 9.6
None	No IPR available	PANTHER	PTHR10619:SF0	F-ACTIN-CAPPING PROTEIN SUBUNIT BETA	coord: 1..46 score: 7.8
None	No IPR available	unknown	SSF90096	Subunits of heterodimeric actin filament capping protein Capz	coord: 2..49 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G005630	Silver-seed gourd	carcmaB0087
CmaCh15G005630	Silver-seed gourd	carcmaB1148
CmaCh15G005630	Cucumber (Chinese Long) v3	cmacucB0362
CmaCh15G005630	Watermelon (97103) v2	cmawmbB317
CmaCh15G005630	Watermelon (97103) v2	cmawmbB318
CmaCh15G005630	Wax gourd	cmawgoB0398
CmaCh15G005630	Cucurbita maxima (Rimu)	cmacmaB325
CmaCh15G005630	Cucumber (Gy14) v1	cgycmaB0995
CmaCh15G005630	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G005630	Cucurbita moschata (Rifu)	cmacmoB309
CmaCh15G005630	Wild cucumber (PI 183967)	cmacpiB315
CmaCh15G005630	Cucumber (Chinese Long) v2	cmacuB308
CmaCh15G005630	Melon (DHL92) v3.5.1	cmameB271
CmaCh15G005630	Watermelon (Charleston Gray)	cmawcgB271
CmaCh15G005630	Watermelon (Charleston Gray)	cmawcgB272
CmaCh15G005630	Watermelon (97103) v1	cmawmB258
CmaCh15G005630	Watermelon (97103) v1	cmawmB259
CmaCh15G005630	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G005630	Cucurbita pepo (Zucchini)	cmacpeB318
CmaCh15G005630	Bottle gourd (USVL1VR-Ls)	cmalsiB294
CmaCh15G005630	Cucumber (Gy14) v2	cgybcmaB740
CmaCh15G005630	Melon (DHL92) v3.6.1	cmamedB311