CmaCh15G001490 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G001490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr15 : 696887 .. 697213 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGGCAATGGTACAACGGCGAGGCAGAGGACGACGGTGAGTCGGTTGGATCTCCGAGACGAGTAACGGTGAGAGAGGAATTGAAATATTCGCGGACCTGTGTGATTATCCCATCTGTGACGGTCCAAGCGTGGATCCAGGAGATGGAACGGCTAGGGTCGCAGCCTTCGACGAGGACGGTGGGGCCGAAGGATGTGATTGATTGAGGAACGAACTGAAAGGATTGGCCGTCGGATGAGGCTCCAGTGAGAAGGCGCATCAGAAATTGGTGCGATGGCGGACCGTGGAACCACCACTCGAGATCAGGGGCGAGGATTTGGTGA

mRNA sequence

ATGGAAGGGCAATGGTACAACGGCGAGGCAGAGGACGACGGTGAGTCGGTTGGATCTCCGAGACGAGTAACGGTGAGAGAGGAATTGAAATATTCGCGGACCTGTGTGATTATCCCATCTGTGACGGTCCAAGCGTGGATCCAGGAGATGGAACGGCTAGGGTCGCAGCCTTCGACGAGGACGGTGGGGCCGAAGGATGATTGGCCGTCGGATGAGGCTCCAGTGAGAAGGCGCATCAGAAATTGGTGCGATGGCGGACCGTGGAACCACCACTCGAGATCAGGGGCGAGGATTTGGTGA

Coding sequence (CDS)

ATGGAAGGGCAATGGTACAACGGCGAGGCAGAGGACGACGGTGAGTCGGTTGGATCTCCGAGACGAGTAACGGTGAGAGAGGAATTGAAATATTCGCGGACCTGTGTGATTATCCCATCTGTGACGGTCCAAGCGTGGATCCAGGAGATGGAACGGCTAGGGTCGCAGCCTTCGACGAGGACGGTGGGGCCGAAGGATGATTGGCCGTCGGATGAGGCTCCAGTGAGAAGGCGCATCAGAAATTGGTGCGATGGCGGACCGTGGAACCACCACTCGAGATCAGGGGCGAGGATTTGGTGA

Protein sequence

MEGQWYNGEAEDDGESVGSPRRVTVREELKYSRTCVIIPSVTVQAWIQEMERLGSQPSTRTVGPKDDWPSDEAPVRRRIRNWCDGGPWNHHSRSGARIW
Homology
[Close]
BLAST of CmaCh15G001490 vs. TrEMBL
Match: U5FZ07_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s18940g PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.9e-10
Identity = 44/73 (60.27%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 20  PRRVTVREELKYSRTCVIIPSVTVQAWIQEMERLGSQPSTRTVGPKDDWPSDE------- 79
           PRRVTVRE LKYS T VIIPSVTVQA  QEMERL   PST T  PK+     E       
Sbjct: 29  PRRVTVREVLKYSLTWVIIPSVTVQACTQEMERLVLHPSTTTRFPKEVMEIGEKPNGTSL 88

Query: 80  ---APVRRRIRNW 83
              +PVRRRI NW
Sbjct: 89  SFCSPVRRRIINW 101

[Close]
BLAST of CmaCh15G001490 vs. NCBI nr
Match: gi|566191583|ref|XP_006378646.1| (hypothetical protein POPTR_0010s18940g [Populus trichocarpa])

HSP 1 Score: 71.6 bits (174), Expect = 8.5e-10
Identity = 44/73 (60.27%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 20  PRRVTVREELKYSRTCVIIPSVTVQAWIQEMERLGSQPSTRTVGPKDDWPSDE------- 79
           PRRVTVRE LKYS T VIIPSVTVQA  QEMERL   PST T  PK+     E       
Sbjct: 29  PRRVTVREVLKYSLTWVIIPSVTVQACTQEMERLVLHPSTTTRFPKEVMEIGEKPNGTSL 88

Query: 80  ---APVRRRIRNW 83
              +PVRRRI NW
Sbjct: 89  SFCSPVRRRIINW 101

The following BLAST results are available for this feature:
BLAST of CmaCh15G001490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh15G001490 vs. TrEMBL
Match NameE-valueIdentityDescription
U5FZ07_POPTR5.9e-1060.27Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s18940g PE=4 SV=1[more]
BLAST of CmaCh15G001490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh15G001490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|566191583|ref|XP_006378646.1|8.5e-1060.27hypothetical protein POPTR_0010s18940g [Populus trichocarpa][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G001490.1CmaCh15G001490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh15G001490Cucurbita maxima (Rimu)cmacmaB324
CmaCh15G001490Cucurbita maxima (Rimu)cmacmaB326
CmaCh15G001490Cucumber (Gy14) v1cgycmaB0353
CmaCh15G001490Cucurbita moschata (Rifu)cmacmoB287
CmaCh15G001490Cucurbita moschata (Rifu)cmacmoB300
CmaCh15G001490Cucurbita moschata (Rifu)cmacmoB308
CmaCh15G001490Cucurbita moschata (Rifu)cmacmoB315
CmaCh15G001490Wild cucumber (PI 183967)cmacpiB314
CmaCh15G001490Cucumber (Chinese Long) v2cmacuB309
CmaCh15G001490Melon (DHL92) v3.5.1cmameB272
CmaCh15G001490Watermelon (Charleston Gray)cmawcgB252
CmaCh15G001490Watermelon (97103) v1cmawmB283
CmaCh15G001490Cucurbita pepo (Zucchini)cmacpeB302
CmaCh15G001490Cucurbita pepo (Zucchini)cmacpeB305
CmaCh15G001490Cucurbita pepo (Zucchini)cmacpeB317
CmaCh15G001490Cucurbita pepo (Zucchini)cmacpeB320
CmaCh15G001490Bottle gourd (USVL1VR-Ls)cmalsiB270
CmaCh15G001490Bottle gourd (USVL1VR-Ls)cmalsiB276
CmaCh15G001490Bottle gourd (USVL1VR-Ls)cmalsiB285
CmaCh15G001490Cucumber (Gy14) v2cgybcmaB490
CmaCh15G001490Cucumber (Gy14) v2cgybcmaB741
CmaCh15G001490Melon (DHL92) v3.6.1cmamedB312
CmaCh15G001490Melon (DHL92) v3.6.1cmamedB324
CmaCh15G001490Silver-seed gourdcarcmaB0030
CmaCh15G001490Silver-seed gourdcarcmaB0362
CmaCh15G001490Silver-seed gourdcarcmaB0774
CmaCh15G001490Silver-seed gourdcarcmaB0943
CmaCh15G001490Cucumber (Chinese Long) v3cmacucB0339
CmaCh15G001490Cucumber (Chinese Long) v3cmacucB0350
CmaCh15G001490Cucumber (Chinese Long) v3cmacucB0363
CmaCh15G001490Watermelon (97103) v2cmawmbB296
CmaCh15G001490Watermelon (97103) v2cmawmbB303
CmaCh15G001490Watermelon (97103) v2cmawmbB315
CmaCh15G001490Wax gourdcmawgoB0397
CmaCh15G001490Wax gourdcmawgoB0402